data_6GWV
#
_model_server_result.job_id            KgvfWPbkMImSrhemCyq5QQ 
_model_server_result.datetime_utc      '2024-11-24 15:26:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gwv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":301}' 
#
_entry.id    6GWV 
#
_exptl.entry_id    6GWV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.62 
_cell.angle_gamma         90 
_cell.entry_id            6GWV 
_cell.length_a            116.71 
_cell.length_b            147.3 
_cell.length_c            192.32 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GWV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
PISA hexameric 6 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,S,T,U,V,W 1 1 
G,H,I,J,K,L,X 2 1 
M,N,O,P,Q,R,Y,Z,AA,BA,CA,DA,EA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 T N N 
? 4 CA N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6GWV 
_atom_sites.fract_transf_matrix[1][1]    0.008568 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002721 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 SO4 B 1 301 5 SO4 SO4 . 
T 4 ATP A 1 301 301 ATP ATP . 
U 3 SO4 D 1 301 6 SO4 SO4 . 
V 3 SO4 E 1 301 7 SO4 SO4 . 
W 3 SO4 F 1 301 8 SO4 SO4 . 
X 3 SO4 G 1 301 4 SO4 SO4 . 
Y 3 SO4 N 1 301 2 SO4 SO4 . 
Z 3 SO4 N 1 302 10 SO4 SO4 . 
AA 3 SO4 M 1 301 1 SO4 SO4 . 
BA 5 CL M 1 302 1 CL CL . 
CA 4 ATP P 1 301 301 ATP ATP . 
DA 3 SO4 Q 1 301 3 SO4 SO4 . 
EA 3 SO4 R 1 301 9 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . CA 4 -71.01 -96.687 -68.184 1 84.15 ? PG ATP 301 P 1 
HETATM 2 O O1G ATP . . . CA 4 -71.143 -96.315 -69.641 1 79.93 ? O1G ATP 301 P 1 
HETATM 3 O O2G ATP . . . CA 4 -71.2 -95.447 -67.298 1 89.33 ? O2G ATP 301 P 1 
HETATM 4 O O3G ATP . . . CA 4 -72.062 -97.711 -67.83 1 67.47 ? O3G ATP 301 P 1 
HETATM 5 P PB ATP . . . CA 4 -69.135 -98.855 -68.281 1 104.08 ? PB ATP 301 P 1 
HETATM 6 O O1B ATP . . . CA 4 -70.015 -99.319 -69.431 1 106.98 ? O1B ATP 301 P 1 
HETATM 7 O O2B ATP . . . CA 4 -67.69 -98.984 -68.652 1 100.93 ? O2B ATP 301 P 1 
HETATM 8 O O3B ATP . . . CA 4 -69.505 -97.307 -67.931 1 98.05 ? O3B ATP 301 P 1 
HETATM 9 P PA ATP . . . CA 4 -70.358 -101.163 -66.978 1 117.93 ? PA ATP 301 P 1 
HETATM 10 O O1A ATP . . . CA 4 -70.318 -101.776 -68.38 1 124.12 ? O1A ATP 301 P 1 
HETATM 11 O O2A ATP . . . CA 4 -71.791 -100.863 -66.586 1 124.28 ? O2A ATP 301 P 1 
HETATM 12 O O3A ATP . . . CA 4 -69.451 -99.775 -66.941 1 107.59 ? O3A ATP 301 P 1 
HETATM 13 O O5' ATP . . . CA 4 -69.649 -102.24 -65.87 1 121.78 ? O5' ATP 301 P 1 
HETATM 14 C C5' ATP . . . CA 4 -68.357 -102.794 -66.24 1 127.91 ? C5' ATP 301 P 1 
HETATM 15 C C4' ATP . . . CA 4 -68.392 -104.126 -65.815 1 128.82 ? C4' ATP 301 P 1 
HETATM 16 O O4' ATP . . . CA 4 -69.462 -104.907 -66.547 1 129.06 ? O4' ATP 301 P 1 
HETATM 17 C C3' ATP . . . CA 4 -67.078 -104.984 -66.164 1 128.08 ? C3' ATP 301 P 1 
HETATM 18 O O3' ATP . . . CA 4 -66.106 -104.863 -65.019 1 121.15 ? O3' ATP 301 P 1 
HETATM 19 C C2' ATP . . . CA 4 -67.478 -106.17 -66.311 1 135.8 ? C2' ATP 301 P 1 
HETATM 20 O O2' ATP . . . CA 4 -66.981 -106.978 -65.167 1 140.09 ? O2' ATP 301 P 1 
HETATM 21 C C1' ATP . . . CA 4 -69.139 -106.154 -66.242 1 131.97 ? C1' ATP 301 P 1 
HETATM 22 N N9 ATP . . . CA 4 -69.931 -107.105 -66.931 1 127.78 ? N9 ATP 301 P 1 
HETATM 23 C C8 ATP . . . CA 4 -71.163 -107.535 -66.709 1 129.3 ? C8 ATP 301 P 1 
HETATM 24 N N7 ATP . . . CA 4 -71.413 -108.489 -67.606 1 126.78 ? N7 ATP 301 P 1 
HETATM 25 C C5 ATP . . . CA 4 -70.322 -108.645 -68.363 1 128.6 ? C5 ATP 301 P 1 
HETATM 26 C C6 ATP . . . CA 4 -70.078 -109.505 -69.409 1 134.24 ? C6 ATP 301 P 1 
HETATM 27 N N6 ATP . . . CA 4 -70.708 -110.522 -70.198 1 138.66 ? N6 ATP 301 P 1 
HETATM 28 N N1 ATP . . . CA 4 -68.915 -109.483 -70.033 1 136.45 ? N1 ATP 301 P 1 
HETATM 29 C C2 ATP . . . CA 4 -67.953 -108.626 -69.623 1 137.05 ? C2 ATP 301 P 1 
HETATM 30 N N3 ATP . . . CA 4 -68.194 -107.795 -68.59 1 135.22 ? N3 ATP 301 P 1 
HETATM 31 C C4 ATP . . . CA 4 -69.377 -107.799 -67.95 1 130.24 ? C4 ATP 301 P 1 
HETATM 32 H "H5'1" ATP . . . CA 4 -68.229 -102.746 -67.2 1 153.49 ? "H5'1" ATP 301 P 1 
HETATM 33 H "H5'2" ATP . . . CA 4 -67.642 -102.313 -65.795 1 153.49 ? "H5'2" ATP 301 P 1 
HETATM 34 H H4' ATP . . . CA 4 -68.521 -104.09 -64.854 1 154.58 ? H4' ATP 301 P 1 
HETATM 35 H H3' ATP . . . CA 4 -66.669 -104.689 -66.993 1 153.7 ? H3' ATP 301 P 1 
HETATM 36 H HO3' ATP . . . CA 4 -65.341 -105.138 -65.267 1 145.38 ? HO3' ATP 301 P 1 
HETATM 37 H H2' ATP . . . CA 4 -67.188 -106.502 -67.175 1 162.96 ? H2' ATP 301 P 1 
HETATM 38 H HO2' ATP . . . CA 4 -66.419 -107.551 -65.447 1 168.11 ? HO2' ATP 301 P 1 
HETATM 39 H H1' ATP . . . CA 4 -69.329 -106.411 -65.327 1 158.36 ? H1' ATP 301 P 1 
HETATM 40 H H8 ATP . . . CA 4 -71.744 -107.229 -66.051 1 155.16 ? H8 ATP 301 P 1 
HETATM 41 H HN61 ATP . . . CA 4 -71.298 -111.036 -69.843 1 166.39 ? HN61 ATP 301 P 1 
HETATM 42 H HN62 ATP . . . CA 4 -70.496 -110.617 -71.026 1 166.39 ? HN62 ATP 301 P 1 
HETATM 43 H H2 ATP . . . CA 4 -67.128 -108.609 -70.053 1 164.46 ? H2 ATP 301 P 1 
#
_model_server_stats.io_time_ms              211 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    115 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          30 
_model_server_stats.element_count           43 
#