data_6GWV # _model_server_result.job_id RIqHnd0eurkTF82ece4eiQ _model_server_result.datetime_utc '2024-11-24 16:05:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gwv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":301}' # _entry.id 6GWV # _exptl.entry_id 6GWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.62 _cell.angle_gamma 90 _cell.entry_id 6GWV _cell.length_a 116.71 _cell.length_b 147.3 _cell.length_c 192.32 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,S,T,U,V,W 1 1 G,H,I,J,K,L,X 2 1 M,N,O,P,Q,R,Y,Z,AA,BA,CA,DA,EA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 T N N ? 4 CA N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6GWV _atom_sites.fract_transf_matrix[1][1] 0.008568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002721 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 3 SO4 B 1 301 5 SO4 SO4 . T 4 ATP A 1 301 301 ATP ATP . U 3 SO4 D 1 301 6 SO4 SO4 . V 3 SO4 E 1 301 7 SO4 SO4 . W 3 SO4 F 1 301 8 SO4 SO4 . X 3 SO4 G 1 301 4 SO4 SO4 . Y 3 SO4 N 1 301 2 SO4 SO4 . Z 3 SO4 N 1 302 10 SO4 SO4 . AA 3 SO4 M 1 301 1 SO4 SO4 . BA 5 CL M 1 302 1 CL CL . CA 4 ATP P 1 301 301 ATP ATP . DA 3 SO4 Q 1 301 3 SO4 SO4 . EA 3 SO4 R 1 301 9 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . T 4 -7.835 -27.451 -70.446 1 33.72 ? PG ATP 301 A 1 HETATM 2 O O1G ATP . . . T 4 -8.736 -28.183 -71.417 1 34.34 ? O1G ATP 301 A 1 HETATM 3 O O2G ATP . . . T 4 -6.9 -26.569 -71.234 1 33.24 ? O2G ATP 301 A 1 HETATM 4 O O3G ATP . . . T 4 -8.683 -26.607 -69.483 1 36.18 ? O3G ATP 301 A 1 HETATM 5 P PB ATP . . . T 4 -5.679 -29.333 -70.251 1 37.91 ? PB ATP 301 A 1 HETATM 6 O O1B ATP . . . T 4 -6.074 -29.796 -71.647 1 35.58 ? O1B ATP 301 A 1 HETATM 7 O O2B ATP . . . T 4 -4.483 -28.437 -70.343 1 36.66 ? O2B ATP 301 A 1 HETATM 8 O O3B ATP . . . T 4 -6.928 -28.52 -69.585 1 36.02 ? O3B ATP 301 A 1 HETATM 9 P PA ATP . . . T 4 -6.213 -32.056 -69.392 1 38.47 ? PA ATP 301 A 1 HETATM 10 O O1A ATP . . . T 4 -7.362 -31.861 -70.384 1 38.95 ? O1A ATP 301 A 1 HETATM 11 O O2A ATP . . . T 4 -6.774 -32.404 -68.023 1 46.6 ? O2A ATP 301 A 1 HETATM 12 O O3A ATP . . . T 4 -5.329 -30.655 -69.312 1 38.83 ? O3A ATP 301 A 1 HETATM 13 O O5' ATP . . . T 4 -5.211 -33.295 -69.992 1 50.18 ? O5' ATP 301 A 1 HETATM 14 C C5' ATP . . . T 4 -3.808 -32.999 -70.211 1 39.19 ? C5' ATP 301 A 1 HETATM 15 C C4' ATP . . . T 4 -3.099 -33.775 -69.286 1 38 ? C4' ATP 301 A 1 HETATM 16 O O4' ATP . . . T 4 -3.907 -34.998 -68.918 1 41.54 ? O4' ATP 301 A 1 HETATM 17 C C3' ATP . . . T 4 -1.75 -34.354 -69.916 1 44.72 ? C3' ATP 301 A 1 HETATM 18 O O3' ATP . . . T 4 -0.608 -33.46 -69.528 1 44.25 ? O3' ATP 301 A 1 HETATM 19 C C2' ATP . . . T 4 -1.599 -35.466 -69.38 1 44.1 ? C2' ATP 301 A 1 HETATM 20 O O2' ATP . . . T 4 -0.838 -35.269 -68.116 1 45.33 ? O2' ATP 301 A 1 HETATM 21 C C1' ATP . . . T 4 -3.091 -36.049 -68.953 1 44.55 ? C1' ATP 301 A 1 HETATM 22 N N9 ATP . . . T 4 -3.708 -37.118 -69.67 1 40.99 ? N9 ATP 301 A 1 HETATM 23 C C8 ATP . . . T 4 -4.745 -37.898 -69.392 1 39.74 ? C8 ATP 301 A 1 HETATM 24 N N7 ATP . . . T 4 -4.876 -38.772 -70.391 1 41.09 ? N7 ATP 301 A 1 HETATM 25 C C5 ATP . . . T 4 -3.917 -38.519 -71.285 1 40.04 ? C5 ATP 301 A 1 HETATM 26 C C6 ATP . . . T 4 -3.629 -39.149 -72.472 1 41.27 ? C6 ATP 301 A 1 HETATM 27 N N6 ATP . . . T 4 -4.105 -40.207 -73.313 1 42.94 ? N6 ATP 301 A 1 HETATM 28 N N1 ATP . . . T 4 -2.624 -38.735 -73.223 1 39.48 ? N1 ATP 301 A 1 HETATM 29 C C2 ATP . . . T 4 -1.861 -37.7 -72.804 1 41.73 ? C2 ATP 301 A 1 HETATM 30 N N3 ATP . . . T 4 -2.146 -37.092 -71.635 1 39.08 ? N3 ATP 301 A 1 HETATM 31 C C4 ATP . . . T 4 -3.171 -37.498 -70.859 1 39.92 ? C4 ATP 301 A 1 HETATM 32 H "H5'1" ATP . . . T 4 -3.552 -33.235 -71.117 1 47.03 ? "H5'1" ATP 301 A 1 HETATM 33 H "H5'2" ATP . . . T 4 -3.636 -32.056 -70.063 1 47.03 ? "H5'2" ATP 301 A 1 HETATM 34 H H4' ATP . . . T 4 -2.891 -33.239 -68.505 1 45.6 ? H4' ATP 301 A 1 HETATM 35 H H3' ATP . . . T 4 -1.825 -34.442 -70.879 1 53.66 ? H3' ATP 301 A 1 HETATM 36 H HO3' ATP . . . T 4 -0.077 -33.376 -70.186 1 53.1 ? HO3' ATP 301 A 1 HETATM 37 H H2' ATP . . . T 4 -1.179 -36.065 -70.018 1 52.92 ? H2' ATP 301 A 1 HETATM 38 H HO2' ATP . . . T 4 -0.723 -36.02 -67.734 1 54.4 ? HO2' ATP 301 A 1 HETATM 39 H H1' ATP . . . T 4 -2.896 -36.444 -68.089 1 53.46 ? H1' ATP 301 A 1 HETATM 40 H H8 ATP . . . T 4 -5.284 -37.844 -68.635 1 47.69 ? H8 ATP 301 A 1 HETATM 41 H HN61 ATP . . . T 4 -3.979 -41.027 -73.085 1 51.53 ? HN61 ATP 301 A 1 HETATM 42 H HN62 ATP . . . T 4 -4.517 -40.022 -74.045 1 51.53 ? HN62 ATP 301 A 1 HETATM 43 H H2 ATP . . . T 4 -1.144 -37.41 -73.319 1 50.08 ? H2 ATP 301 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 43 #