data_6GX7 # _model_server_result.job_id C4AT1LSV-fBcIiXNDr0mTA _model_server_result.datetime_utc '2024-11-05 09:22:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6GX7 # _exptl.entry_id 6GX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.49 _cell.angle_gamma 90 _cell.entry_id 6GX7 _cell.length_a 148.06 _cell.length_b 95.85 _cell.length_c 158.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,I,J,K,L,M,N,O,P 1 1 C,D,F,H,Q,R,S,T,U,V,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N ? 5 Q N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 71 A GLU 71 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 I O2G GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 I O1B GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 L O2G GTP . B GTP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 L O1B GTP . B GTP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc6 C OE1 GLU 71 C GLU 71 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 C OE2 GLU 71 C GLU 71 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc8 Q O2G GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc9 Q O1B GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 T O3G GTP . D GTP 501 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 142 n n PG O2G GTP sing 143 n n PG O3G GTP sing 144 n n PG O3B GTP sing 145 n n O2G HOG2 GTP sing 146 n n O3G HOG3 GTP sing 147 n n O3B PB GTP sing 148 n n PB O1B GTP doub 149 n n PB O2B GTP sing 150 n n PB O3A GTP sing 151 n n O2B HOB2 GTP sing 152 n n O3A PA GTP sing 153 n n PA O1A GTP doub 154 n n PA O2A GTP sing 155 n n PA O5' GTP sing 156 n n O2A HOA2 GTP sing 157 n n O5' C5' GTP sing 158 n n C5' C4' GTP sing 159 n n C5' H5' GTP sing 160 n n C5' "H5''" GTP sing 161 n n C4' O4' GTP sing 162 n n C4' C3' GTP sing 163 n n C4' H4' GTP sing 164 n n O4' C1' GTP sing 165 n n C3' O3' GTP sing 166 n n C3' C2' GTP sing 167 n n C3' H3' GTP sing 168 n n O3' HO3' GTP sing 169 n n C2' O2' GTP sing 170 n n C2' C1' GTP sing 171 n n C2' H2' GTP sing 172 n n O2' HO2' GTP sing 173 n n C1' N9 GTP sing 174 n n C1' H1' GTP sing 175 n n N9 C8 GTP sing 176 n y N9 C4 GTP sing 177 n y C8 N7 GTP doub 178 n y C8 H8 GTP sing 179 n n N7 C5 GTP sing 180 n y C5 C6 GTP sing 181 n n C5 C4 GTP doub 182 n y C6 O6 GTP doub 183 n n C6 N1 GTP sing 184 n n N1 C2 GTP sing 185 n n N1 HN1 GTP sing 186 n n C2 N2 GTP sing 187 n n C2 N3 GTP doub 188 n n N2 HN21 GTP sing 189 n n N2 HN22 GTP sing 190 n n N3 C4 GTP sing 191 n n # _atom_sites.entry_id 6GX7 _atom_sites.fract_transf_matrix[1][1] 0.006754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 GTP A 1 501 501 GTP GTP . J 6 MG A 1 502 502 MG MG . K 7 SO4 A 1 503 507 SO4 SO4 . L 5 GTP B 1 501 501 GTP GTP . M 6 MG B 1 502 502 MG MG . N 8 MES B 1 503 507 MES MES . O 8 MES B 1 504 508 MES MES . P 9 GOL B 1 505 601 GOL GOL . Q 5 GTP C 1 501 501 GTP GTP . R 6 MG C 1 502 502 MG MG . S 7 SO4 C 1 503 507 SO4 SO4 . T 5 GTP D 1 501 501 GTP GTP . U 6 MG D 1 502 502 MG MG . V 8 MES D 1 503 507 MES MES . W 8 MES D 1 504 508 MES MES . X 10 PGE D 1 505 509 PGE PGE . Y 9 GOL D 1 506 601 GOL GOL . Z 9 GOL D 1 507 701 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . I 5 49.115 -14.244 55.168 1 83.36 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . I 5 47.728 -13.785 54.946 1 86.17 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . I 5 49.953 -13.35 56.244 1 81.04 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . I 5 49.194 -15.738 55.45 1 78.96 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . I 5 49.879 -14.129 53.78 1 81.81 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . I 5 51.091 -13.165 53.437 1 79.27 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . I 5 50.862 -11.9 54.186 1 81.38 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . I 5 51.18 -13.012 51.918 1 76.53 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . I 5 52.408 -13.911 53.925 1 81.25 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . I 5 53.877 -14.02 53.324 1 84.33 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . I 5 54.752 -13.336 54.289 1 87.06 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . I 5 53.895 -13.288 51.983 1 86.05 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . I 5 54.358 -15.536 53.035 1 88.53 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . I 5 55.356 -16.244 53.808 1 90.65 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . I 5 56.499 -16.564 52.873 1 91.38 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . I 5 57.001 -15.347 52.271 1 90.08 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . I 5 57.711 -17.244 53.501 1 93.13 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . I 5 58.35 -18.077 52.537 1 95.92 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . I 5 58.594 -16.054 53.873 1 92.84 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . I 5 59.938 -16.499 54.043 1 94.17 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . I 5 58.342 -15.119 52.674 1 90.18 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . I 5 58.537 -13.647 52.908 1 85.12 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . I 5 57.83 -12.829 53.753 1 81.9 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . I 5 58.248 -11.587 53.761 1 78.77 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . I 5 59.313 -11.584 52.88 1 77.64 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . I 5 60.287 -10.577 52.599 1 75.09 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . I 5 60.357 -9.464 53.111 1 76.5 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . I 5 61.289 -11.026 51.763 1 71.38 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . I 5 61.375 -12.288 51.253 1 73.63 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . I 5 62.452 -12.574 50.524 1 73.96 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . I 5 60.477 -13.24 51.496 1 77.91 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . I 5 59.493 -12.835 52.329 1 80.46 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #