data_6GX7
#
_model_server_result.job_id            LOPdy44x1HO3lC7BBt4spA 
_model_server_result.datetime_utc      '2024-11-05 09:33:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gx7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":501}' 
#
_entry.id    6GX7 
#
_exptl.entry_id    6GX7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.49 
_cell.angle_gamma         90 
_cell.entry_id            6GX7 
_cell.length_a            148.06 
_cell.length_b            95.85 
_cell.length_c            158.06 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GX7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,I,J,K,L,M,N,O,P 1 1 
C,D,F,H,Q,R,S,T,U,V,W,X,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 L N N 
? 5 Q N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 71 A GLU 71 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc2 I O2G GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc3 I O1B GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc4 L O2G GTP . B GTP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc5 L O1B GTP . B GTP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
metalc ? metalc6 C OE1 GLU 71 C GLU 71 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc7 C OE2 GLU 71 C GLU 71 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc8 Q O2G GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc9 Q O1B GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc10 T O3G GTP . D GTP 501 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 142 n n 
PG O2G GTP sing 143 n n 
PG O3G GTP sing 144 n n 
PG O3B GTP sing 145 n n 
O2G HOG2 GTP sing 146 n n 
O3G HOG3 GTP sing 147 n n 
O3B PB GTP sing 148 n n 
PB O1B GTP doub 149 n n 
PB O2B GTP sing 150 n n 
PB O3A GTP sing 151 n n 
O2B HOB2 GTP sing 152 n n 
O3A PA GTP sing 153 n n 
PA O1A GTP doub 154 n n 
PA O2A GTP sing 155 n n 
PA O5' GTP sing 156 n n 
O2A HOA2 GTP sing 157 n n 
O5' C5' GTP sing 158 n n 
C5' C4' GTP sing 159 n n 
C5' H5' GTP sing 160 n n 
C5' "H5''" GTP sing 161 n n 
C4' O4' GTP sing 162 n n 
C4' C3' GTP sing 163 n n 
C4' H4' GTP sing 164 n n 
O4' C1' GTP sing 165 n n 
C3' O3' GTP sing 166 n n 
C3' C2' GTP sing 167 n n 
C3' H3' GTP sing 168 n n 
O3' HO3' GTP sing 169 n n 
C2' O2' GTP sing 170 n n 
C2' C1' GTP sing 171 n n 
C2' H2' GTP sing 172 n n 
O2' HO2' GTP sing 173 n n 
C1' N9 GTP sing 174 n n 
C1' H1' GTP sing 175 n n 
N9 C8 GTP sing 176 n y 
N9 C4 GTP sing 177 n y 
C8 N7 GTP doub 178 n y 
C8 H8 GTP sing 179 n n 
N7 C5 GTP sing 180 n y 
C5 C6 GTP sing 181 n n 
C5 C4 GTP doub 182 n y 
C6 O6 GTP doub 183 n n 
C6 N1 GTP sing 184 n n 
N1 C2 GTP sing 185 n n 
N1 HN1 GTP sing 186 n n 
C2 N2 GTP sing 187 n n 
C2 N3 GTP doub 188 n n 
N2 HN21 GTP sing 189 n n 
N2 HN22 GTP sing 190 n n 
N3 C4 GTP sing 191 n n 
#
_atom_sites.entry_id                     6GX7 
_atom_sites.fract_transf_matrix[1][1]    0.006754 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001373 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 GTP A 1 501 501 GTP GTP . 
J 6 MG A 1 502 502 MG MG . 
K 7 SO4 A 1 503 507 SO4 SO4 . 
L 5 GTP B 1 501 501 GTP GTP . 
M 6 MG B 1 502 502 MG MG . 
N 8 MES B 1 503 507 MES MES . 
O 8 MES B 1 504 508 MES MES . 
P 9 GOL B 1 505 601 GOL GOL . 
Q 5 GTP C 1 501 501 GTP GTP . 
R 6 MG C 1 502 502 MG MG . 
S 7 SO4 C 1 503 507 SO4 SO4 . 
T 5 GTP D 1 501 501 GTP GTP . 
U 6 MG D 1 502 502 MG MG . 
V 8 MES D 1 503 507 MES MES . 
W 8 MES D 1 504 508 MES MES . 
X 10 PGE D 1 505 509 PGE PGE . 
Y 9 GOL D 1 506 601 GOL GOL . 
Z 9 GOL D 1 507 701 GOL GOL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . Q 5 18.941 -14.121 15.093 1 85.54 ? PG GTP 501 C 1 
HETATM 2 O O1G GTP . . . Q 5 18.571 -14.592 16.47 1 85.25 ? O1G GTP 501 C 1 
HETATM 3 O O2G GTP . . . Q 5 18.164 -14.89 13.99 1 87.11 ? O2G GTP 501 C 1 
HETATM 4 O O3G GTP . . . Q 5 18.82 -12.597 14.863 1 82.68 ? O3G GTP 501 C 1 
HETATM 5 O O3B GTP . . . Q 5 20.48 -14.407 14.81 1 81.9 ? O3B GTP 501 C 1 
HETATM 6 P PB GTP . . . Q 5 21.119 -15.22 13.606 1 78.22 ? PB GTP 501 C 1 
HETATM 7 O O1B GTP . . . Q 5 20.366 -16.489 13.462 1 81.3 ? O1B GTP 501 C 1 
HETATM 8 O O2B GTP . . . Q 5 22.631 -15.392 13.786 1 77.53 ? O2B GTP 501 C 1 
HETATM 9 O O3A GTP . . . Q 5 20.889 -14.292 12.34 1 79.96 ? O3A GTP 501 C 1 
HETATM 10 P PA GTP . . . Q 5 21.578 -14.287 10.909 1 83.12 ? PA GTP 501 C 1 
HETATM 11 O O1A GTP . . . Q 5 20.561 -14.781 9.95 1 87.34 ? O1A GTP 501 C 1 
HETATM 12 O O2A GTP . . . Q 5 22.825 -15.176 10.987 1 82.82 ? O2A GTP 501 C 1 
HETATM 13 O O5' GTP . . . Q 5 22.038 -12.781 10.585 1 83.93 ? O5' GTP 501 C 1 
HETATM 14 C C5' GTP . . . Q 5 21.554 -12.027 9.45 1 83.13 ? C5' GTP 501 C 1 
HETATM 15 C C4' GTP . . . Q 5 22.751 -11.818 8.557 1 81.65 ? C4' GTP 501 C 1 
HETATM 16 O O4' GTP . . . Q 5 23.34 -13.095 8.222 1 81.85 ? O4' GTP 501 C 1 
HETATM 17 C C3' GTP . . . Q 5 22.51 -11.084 7.242 1 81.1 ? C3' GTP 501 C 1 
HETATM 18 O O3' GTP . . . Q 5 23.566 -10.156 7.009 1 82.62 ? O3' GTP 501 C 1 
HETATM 19 C C2' GTP . . . Q 5 22.472 -12.217 6.212 1 82.32 ? C2' GTP 501 C 1 
HETATM 20 O O2' GTP . . . Q 5 22.877 -11.688 4.951 1 83.79 ? O2' GTP 501 C 1 
HETATM 21 C C1' GTP . . . Q 5 23.469 -13.219 6.819 1 82.6 ? C1' GTP 501 C 1 
HETATM 22 N N9 GTP . . . Q 5 23.291 -14.662 6.455 1 80.95 ? N9 GTP 501 C 1 
HETATM 23 C C8 GTP . . . Q 5 22.261 -15.484 6.838 1 79.25 ? C8 GTP 501 C 1 
HETATM 24 N N7 GTP . . . Q 5 22.396 -16.725 6.447 1 77.36 ? N7 GTP 501 C 1 
HETATM 25 C C5 GTP . . . Q 5 23.584 -16.729 5.742 1 78.1 ? C5 GTP 501 C 1 
HETATM 26 C C6 GTP . . . Q 5 24.201 -17.755 4.961 1 79.01 ? C6 GTP 501 C 1 
HETATM 27 O O6 GTP . . . Q 5 23.777 -18.886 4.765 1 79.18 ? O6 GTP 501 C 1 
HETATM 28 N N1 GTP . . . Q 5 25.328 -17.313 4.3 1 80.39 ? N1 GTP 501 C 1 
HETATM 29 C C2 GTP . . . Q 5 25.823 -16.039 4.35 1 83.84 ? C2 GTP 501 C 1 
HETATM 30 N N2 GTP . . . Q 5 26.896 -15.782 3.598 1 84.3 ? N2 GTP 501 C 1 
HETATM 31 N N3 GTP . . . Q 5 25.268 -15.063 5.076 1 83.95 ? N3 GTP 501 C 1 
HETATM 32 C C4 GTP . . . Q 5 24.153 -15.469 5.737 1 80.77 ? C4 GTP 501 C 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#