data_6GX7 # _model_server_result.job_id g5dDrTFkdn7M_S1NewRooQ _model_server_result.datetime_utc '2024-11-25 08:39:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":505}' # _entry.id 6GX7 # _exptl.entry_id 6GX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.49 _cell.angle_gamma 90 _cell.entry_id 6GX7 _cell.length_a 148.06 _cell.length_b 95.85 _cell.length_c 158.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,I,J,K,L,M,N,O,P 1 1 C,D,F,H,Q,R,S,T,U,V,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 71 A GLU 71 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 I O2G GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 I O1B GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 L O2G GTP . B GTP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 L O1B GTP . B GTP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc6 C OE1 GLU 71 C GLU 71 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 C OE2 GLU 71 C GLU 71 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc8 Q O2G GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc9 Q O1B GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 T O3G GTP . D GTP 501 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 323 n n C1 C2 PGE sing 324 n n C1 H1 PGE sing 325 n n C1 H12 PGE sing 326 n n O1 HO1 PGE sing 327 n n C2 O2 PGE sing 328 n n C2 H2 PGE sing 329 n n C2 H22 PGE sing 330 n n O2 C3 PGE sing 331 n n C3 C4 PGE sing 332 n n C3 H3 PGE sing 333 n n C3 H32 PGE sing 334 n n C4 O3 PGE sing 335 n n C4 H4 PGE sing 336 n n C4 H42 PGE sing 337 n n O4 C6 PGE sing 338 n n O4 HO4 PGE sing 339 n n C6 C5 PGE sing 340 n n C6 H6 PGE sing 341 n n C6 H62 PGE sing 342 n n C5 O3 PGE sing 343 n n C5 H5 PGE sing 344 n n C5 H52 PGE sing 345 n n # _atom_sites.entry_id 6GX7 _atom_sites.fract_transf_matrix[1][1] 0.006754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 GTP A 1 501 501 GTP GTP . J 6 MG A 1 502 502 MG MG . K 7 SO4 A 1 503 507 SO4 SO4 . L 5 GTP B 1 501 501 GTP GTP . M 6 MG B 1 502 502 MG MG . N 8 MES B 1 503 507 MES MES . O 8 MES B 1 504 508 MES MES . P 9 GOL B 1 505 601 GOL GOL . Q 5 GTP C 1 501 501 GTP GTP . R 6 MG C 1 502 502 MG MG . S 7 SO4 C 1 503 507 SO4 SO4 . T 5 GTP D 1 501 501 GTP GTP . U 6 MG D 1 502 502 MG MG . V 8 MES D 1 503 507 MES MES . W 8 MES D 1 504 508 MES MES . X 10 PGE D 1 505 509 PGE PGE . Y 9 GOL D 1 506 601 GOL GOL . Z 9 GOL D 1 507 701 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . X 10 -13.572 4.666 37.034 1 132.89 ? C1 PGE 505 D 1 HETATM 2 O O1 PGE . . . X 10 -14.032 3.324 37.055 1 129.84 ? O1 PGE 505 D 1 HETATM 3 C C2 PGE . . . X 10 -12.207 4.773 36.413 1 133.7 ? C2 PGE 505 D 1 HETATM 4 O O2 PGE . . . X 10 -11.855 6.136 36.197 1 136.98 ? O2 PGE 505 D 1 HETATM 5 C C3 PGE . . . X 10 -10.683 6.312 35.403 1 136.99 ? C3 PGE 505 D 1 HETATM 6 C C4 PGE . . . X 10 -10.355 7.776 35.285 1 140.77 ? C4 PGE 505 D 1 HETATM 7 O O4 PGE . . . X 10 -6.873 10.893 34.677 1 138.29 ? O4 PGE 505 D 1 HETATM 8 C C6 PGE . . . X 10 -7.269 9.537 34.515 1 138.49 ? C6 PGE 505 D 1 HETATM 9 C C5 PGE . . . X 10 -8.765 9.385 34.554 1 140.81 ? C5 PGE 505 D 1 HETATM 10 O O3 PGE . . . X 10 -9.131 8.006 34.589 1 140.41 ? O3 PGE 505 D 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #