data_6GX9 # _model_server_result.job_id pKPuwMo-pg6j1YiePeEF_Q _model_server_result.datetime_utc '2025-07-31 06:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1003}' # _entry.id 6GX9 # _exptl.entry_id 6GX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.172 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BICINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GX9 _cell.length_a 200.335 _cell.length_b 200.335 _cell.length_c 234.807 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,M 1 1 B,D,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE2 GLU 301 A GLU 301 1_555 H N2 BEN . A BEN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale2 B OE2 GLU 301 B GLU 301 1_555 L N1 BEN . B BEN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale3 C C ARG 44 C ARG 524 1_555 C N SEP 45 C SEP 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C SEP 45 C SEP 525 1_555 C N ARG 46 C ARG 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 D C ARG 44 D ARG 524 1_555 D N SEP 45 D SEP 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 D C SEP 45 D SEP 525 1_555 D N ARG 46 D ARG 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OE2 GLU 710 A GLU 710 1_555 I MG MG . B MG 1001 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc2 A OE1 GLU 812 A GLU 812 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 A OE2 GLU 813 A GLU 813 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A OE2 GLU 813 A GLU 813 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc5 B OE1 GLU 812 B GLU 812 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 B OE1 GLU 812 B GLU 812 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc7 B OE2 GLU 813 B GLU 813 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc8 B OE2 GLU 813 B GLU 813 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C6 H13 N O4' _chem_comp.formula_weight 163.172 _chem_comp.id BCN _chem_comp.mon_nstd_flag . _chem_comp.name BICINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 BCN sing 70 n n N1 C3 BCN sing 71 n n N1 C5 BCN sing 72 n n C1 C2 BCN sing 73 n n C1 H11 BCN sing 74 n n C1 H12 BCN sing 75 n n C2 O21 BCN doub 76 n n C2 O22 BCN sing 77 n n O22 HO2 BCN sing 78 n n C3 C4 BCN sing 79 n n C3 H31 BCN sing 80 n n C3 H32 BCN sing 81 n n C4 O4 BCN sing 82 n n C4 H41 BCN sing 83 n n C4 H42 BCN sing 84 n n O4 HO4 BCN sing 85 n n C5 C6 BCN sing 86 n n C5 H51 BCN sing 87 n n C5 H52 BCN sing 88 n n C6 O6 BCN sing 89 n n C6 H61 BCN sing 90 n n C6 H62 BCN sing 91 n n O6 HO6 BCN sing 92 n n # _atom_sites.entry_id 6GX9 _atom_sites.fract_transf_matrix[1][1] 0.004992 _atom_sites.fract_transf_matrix[1][2] 0.002882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 1001 4 MG MG . F 3 MG A 1 1002 6 MG MG . G 4 BCN A 1 1003 1 BCN BCN . H 5 BEN A 1 1004 2 BEN BEN . I 3 MG B 1 1001 5 MG MG . J 3 MG B 1 1002 7 MG MG . K 4 BCN B 1 1003 2 BCN BCN . L 5 BEN B 1 1004 1 BEN BEN . M 6 HOH A 1 1101 31 HOH HOH . M 6 HOH A 2 1102 26 HOH HOH . M 6 HOH A 3 1103 23 HOH HOH . M 6 HOH A 4 1104 22 HOH HOH . M 6 HOH A 5 1105 21 HOH HOH . M 6 HOH A 6 1106 28 HOH HOH . M 6 HOH A 7 1107 1 HOH HOH . M 6 HOH A 8 1108 20 HOH HOH . M 6 HOH A 9 1109 19 HOH HOH . M 6 HOH A 10 1110 24 HOH HOH . M 6 HOH A 11 1111 27 HOH HOH . M 6 HOH A 12 1112 8 HOH HOH . M 6 HOH A 13 1113 2 HOH HOH . M 6 HOH A 14 1114 25 HOH HOH . M 6 HOH A 15 1115 4 HOH HOH . M 6 HOH A 16 1116 16 HOH HOH . M 6 HOH A 17 1117 29 HOH HOH . M 6 HOH A 18 1118 10 HOH HOH . M 6 HOH A 19 1119 17 HOH HOH . M 6 HOH A 20 1120 13 HOH HOH . N 6 HOH B 1 1101 32 HOH HOH . N 6 HOH B 2 1102 33 HOH HOH . N 6 HOH B 3 1103 30 HOH HOH . N 6 HOH B 4 1104 34 HOH HOH . N 6 HOH B 5 1105 18 HOH HOH . N 6 HOH B 6 1106 3 HOH HOH . N 6 HOH B 7 1107 14 HOH HOH . N 6 HOH B 8 1108 15 HOH HOH . N 6 HOH B 9 1109 12 HOH HOH . N 6 HOH B 10 1110 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BCN . . . K 4 -55.516 -87.065 11.782 1 107.68 ? N1 BCN 1003 B 1 HETATM 2 C C1 BCN . . . K 4 -54.827 -88.357 11.626 1 100.45 ? C1 BCN 1003 B 1 HETATM 3 C C2 BCN . . . K 4 -54.341 -88.56 10.207 1 116.23 ? C2 BCN 1003 B 1 HETATM 4 O O21 BCN . . . K 4 -55.119 -88.283 9.268 1 112.35 ? O21 BCN 1003 B 1 HETATM 5 O O22 BCN . . . K 4 -53.34 -89.29 10.035 1 111.85 ? O22 BCN 1003 B 1 HETATM 6 C C3 BCN . . . K 4 -56.967 -87.273 11.873 1 83.42 ? C3 BCN 1003 B 1 HETATM 7 C C4 BCN . . . K 4 -57.616 -86.858 10.559 1 94.62 ? C4 BCN 1003 B 1 HETATM 8 O O4 BCN . . . K 4 -57.378 -87.867 9.57 1 94.08 ? O4 BCN 1003 B 1 HETATM 9 C C5 BCN . . . K 4 -55.056 -86.382 12.999 1 93.85 ? C5 BCN 1003 B 1 HETATM 10 C C6 BCN . . . K 4 -53.992 -85.354 12.634 1 92.37 ? C6 BCN 1003 B 1 HETATM 11 O O6 BCN . . . K 4 -53.782 -84.47 13.741 1 92.3 ? O6 BCN 1003 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #