data_6GY1
#
_model_server_result.job_id            liYkshfl334MlfStT1ygCQ 
_model_server_result.datetime_utc      '2025-01-11 03:04:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6GY1 
#
_exptl.entry_id    6GY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GY1 
_cell.length_a            50.41 
_cell.length_b            50.41 
_cell.length_c            168.332 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 143 A ASP 141 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc2 A OD2 ASP 171 A ASP 169 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc3 A OD1 ASN 172 A ASN 170 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc4 B MG MG . A MG 301 1_555 D O22 FGQ . A FGQ 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc5 B MG MG . A MG 301 1_555 F O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 322 n n 
N HN1 SAH sing 323 n n 
N HN2 SAH sing 324 n n 
CA CB SAH sing 325 n n 
CA C SAH sing 326 n n 
CA HA SAH sing 327 n n 
CB CG SAH sing 328 n n 
CB HB1 SAH sing 329 n n 
CB HB2 SAH sing 330 n n 
CG SD SAH sing 331 n n 
CG HG1 SAH sing 332 n n 
CG HG2 SAH sing 333 n n 
SD C5' SAH sing 334 n n 
C O SAH doub 335 n n 
C OXT SAH sing 336 n n 
OXT HXT SAH sing 337 n n 
C5' C4' SAH sing 338 n n 
C5' "H5'1" SAH sing 339 n n 
C5' "H5'2" SAH sing 340 n n 
C4' O4' SAH sing 341 n n 
C4' C3' SAH sing 342 n n 
C4' H4' SAH sing 343 n n 
O4' C1' SAH sing 344 n n 
C3' O3' SAH sing 345 n n 
C3' C2' SAH sing 346 n n 
C3' H3' SAH sing 347 n n 
O3' HO3' SAH sing 348 n n 
C2' O2' SAH sing 349 n n 
C2' C1' SAH sing 350 n n 
C2' H2' SAH sing 351 n n 
O2' HO2' SAH sing 352 n n 
C1' N9 SAH sing 353 n n 
C1' H1' SAH sing 354 n n 
N9 C8 SAH sing 355 n y 
N9 C4 SAH sing 356 n y 
C8 N7 SAH doub 357 n y 
C8 H8 SAH sing 358 n n 
N7 C5 SAH sing 359 n y 
C5 C6 SAH sing 360 n y 
C5 C4 SAH doub 361 n y 
C6 N6 SAH sing 362 n n 
C6 N1 SAH doub 363 n y 
N6 HN61 SAH sing 364 n n 
N6 HN62 SAH sing 365 n n 
N1 C2 SAH sing 366 n y 
C2 N3 SAH doub 367 n y 
C2 H2 SAH sing 368 n n 
N3 C4 SAH sing 369 n y 
#
_atom_sites.entry_id                     6GY1 
_atom_sites.fract_transf_matrix[1][1]    0.019837 
_atom_sites.fract_transf_matrix[1][2]    0.011453 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 225 MG MG . 
C 3 SAH A 1 302 226 SAH SAH . 
D 4 FGQ A 1 303 227 FGQ LIG . 
E 5 DMS A 1 304 228 DMS DMS . 
F 6 HOH A 1 401 274 HOH HOH . 
F 6 HOH A 2 402 261 HOH HOH . 
F 6 HOH A 3 403 253 HOH HOH . 
F 6 HOH A 4 404 241 HOH HOH . 
F 6 HOH A 5 405 251 HOH HOH . 
F 6 HOH A 6 406 244 HOH HOH . 
F 6 HOH A 7 407 283 HOH HOH . 
F 6 HOH A 8 408 256 HOH HOH . 
F 6 HOH A 9 409 282 HOH HOH . 
F 6 HOH A 10 410 271 HOH HOH . 
F 6 HOH A 11 411 233 HOH HOH . 
F 6 HOH A 12 412 239 HOH HOH . 
F 6 HOH A 13 413 276 HOH HOH . 
F 6 HOH A 14 414 272 HOH HOH . 
F 6 HOH A 15 415 277 HOH HOH . 
F 6 HOH A 16 416 234 HOH HOH . 
F 6 HOH A 17 417 235 HOH HOH . 
F 6 HOH A 18 418 247 HOH HOH . 
F 6 HOH A 19 419 231 HOH HOH . 
F 6 HOH A 20 420 243 HOH HOH . 
F 6 HOH A 21 421 258 HOH HOH . 
F 6 HOH A 22 422 259 HOH HOH . 
F 6 HOH A 23 423 269 HOH HOH . 
F 6 HOH A 24 424 238 HOH HOH . 
F 6 HOH A 25 425 250 HOH HOH . 
F 6 HOH A 26 426 245 HOH HOH . 
F 6 HOH A 27 427 240 HOH HOH . 
F 6 HOH A 28 428 236 HOH HOH . 
F 6 HOH A 29 429 265 HOH HOH . 
F 6 HOH A 30 430 273 HOH HOH . 
F 6 HOH A 31 431 278 HOH HOH . 
F 6 HOH A 32 432 242 HOH HOH . 
F 6 HOH A 33 433 267 HOH HOH . 
F 6 HOH A 34 434 237 HOH HOH . 
F 6 HOH A 35 435 266 HOH HOH . 
F 6 HOH A 36 436 257 HOH HOH . 
F 6 HOH A 37 437 229 HOH HOH . 
F 6 HOH A 38 438 248 HOH HOH . 
F 6 HOH A 39 439 232 HOH HOH . 
F 6 HOH A 40 440 254 HOH HOH . 
F 6 HOH A 41 441 249 HOH HOH . 
F 6 HOH A 42 442 270 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 3 20.105 -6.227 -15.793 1 24.01 ? N SAH 302 A 1 
HETATM 2 C CA SAH . . . C 3 19.052 -6.984 -15.062 1 26.72 ? CA SAH 302 A 1 
HETATM 3 C CB SAH . . . C 3 17.654 -6.738 -15.633 1 23.49 ? CB SAH 302 A 1 
HETATM 4 C CG SAH . . . C 3 17.349 -5.261 -15.85 1 26.74 ? CG SAH 302 A 1 
HETATM 5 S SD SAH . . . C 3 15.612 -5.027 -16.335 1 27.02 ? SD SAH 302 A 1 
HETATM 6 C C SAH . . . C 3 19.313 -8.472 -15.166 1 28.87 ? C SAH 302 A 1 
HETATM 7 O O SAH . . . C 3 19.886 -8.803 -16.237 1 27.65 ? O SAH 302 A 1 
HETATM 8 O OXT SAH . . . C 3 18.957 -9.167 -14.174 1 27.69 ? OXT SAH 302 A 1 
HETATM 9 C C5' SAH . . . C 3 15.587 -3.264 -16.719 1 23.05 ? C5' SAH 302 A 1 
HETATM 10 C C4' SAH . . . C 3 15.637 -2.479 -15.44 1 27.44 ? C4' SAH 302 A 1 
HETATM 11 O O4' SAH . . . C 3 16.047 -1.142 -15.779 1 25.92 ? O4' SAH 302 A 1 
HETATM 12 C C3' SAH . . . C 3 14.256 -2.339 -14.783 1 28.14 ? C3' SAH 302 A 1 
HETATM 13 O O3' SAH . . . C 3 14.374 -2.799 -13.441 1 31.11 ? O3' SAH 302 A 1 
HETATM 14 C C2' SAH . . . C 3 14.019 -0.827 -14.785 1 29.65 ? C2' SAH 302 A 1 
HETATM 15 O O2' SAH . . . C 3 13.41 -0.361 -13.584 1 25.72 ? O2' SAH 302 A 1 
HETATM 16 C C1' SAH . . . C 3 15.434 -0.284 -14.808 1 23.16 ? C1' SAH 302 A 1 
HETATM 17 N N9 SAH . . . C 3 15.585 1.039 -15.371 1 26.38 ? N9 SAH 302 A 1 
HETATM 18 C C8 SAH . . . C 3 14.966 1.464 -16.519 1 26.52 ? C8 SAH 302 A 1 
HETATM 19 N N7 SAH . . . C 3 15.327 2.695 -16.83 1 27.1 ? N7 SAH 302 A 1 
HETATM 20 C C5 SAH . . . C 3 16.216 3.08 -15.857 1 25.9 ? C5 SAH 302 A 1 
HETATM 21 C C6 SAH . . . C 3 16.93 4.257 -15.634 1 25.16 ? C6 SAH 302 A 1 
HETATM 22 N N6 SAH . . . C 3 16.84 5.369 -16.466 1 25.61 ? N6 SAH 302 A 1 
HETATM 23 N N1 SAH . . . C 3 17.748 4.307 -14.552 1 31.44 ? N1 SAH 302 A 1 
HETATM 24 C C2 SAH . . . C 3 17.832 3.224 -13.743 1 24.85 ? C2 SAH 302 A 1 
HETATM 25 N N3 SAH . . . C 3 17.185 2.049 -13.863 1 25.67 ? N3 SAH 302 A 1 
HETATM 26 C C4 SAH . . . C 3 16.394 2.051 -14.941 1 25.62 ? C4 SAH 302 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#