data_6GY2 # _model_server_result.job_id 119LbgjEACW9e5Kzwcd6FA _model_server_result.datetime_utc '2025-01-03 03:16:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 6GY2 # _exptl.entry_id 6GY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 80.79 _cell.angle_beta 79.23 _cell.angle_gamma 65.05 _cell.entry_id 6GY2 _cell.length_a 50 _cell.length_b 56.04 _cell.length_c 61.03 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I 1 1 B,C,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C SER 13 C SER 206 1_555 C N TPO 14 C TPO 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 C C TPO 14 C TPO 207 1_555 C N VAL 15 C VAL 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 D C SER 13 D SER 206 1_555 D N TPO 14 D TPO 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 D C TPO 14 D TPO 207 1_555 D N VAL 15 D VAL 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6GY2 _atom_sites.fract_transf_matrix[1][1] 0.02 _atom_sites.fract_transf_matrix[1][2] -0.009305 _atom_sites.fract_transf_matrix[1][3] -0.002968 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019681 _atom_sites.fract_transf_matrix[2][3] -0.001802 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 701 601 GOL GOL . F 4 HOH A 1 801 29 HOH HOH . F 4 HOH A 2 802 6 HOH HOH . F 4 HOH A 3 803 35 HOH HOH . F 4 HOH A 4 804 5 HOH HOH . F 4 HOH A 5 805 56 HOH HOH . F 4 HOH A 6 806 59 HOH HOH . F 4 HOH A 7 807 21 HOH HOH . F 4 HOH A 8 808 1 HOH HOH . F 4 HOH A 9 809 58 HOH HOH . F 4 HOH A 10 810 11 HOH HOH . G 4 HOH B 1 701 48 HOH HOH . G 4 HOH B 2 702 55 HOH HOH . G 4 HOH B 3 703 64 HOH HOH . G 4 HOH B 4 704 60 HOH HOH . G 4 HOH B 5 705 40 HOH HOH . G 4 HOH B 6 706 14 HOH HOH . G 4 HOH B 7 707 3 HOH HOH . G 4 HOH B 8 708 46 HOH HOH . G 4 HOH B 9 709 52 HOH HOH . H 4 HOH C 1 301 42 HOH HOH . I 4 HOH D 1 301 30 HOH HOH . I 4 HOH D 2 302 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 8.424 -38.687 0.276 1 88.63 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . E 3 8.289 -37.995 -0.962 1 88.79 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . E 3 8.947 -37.762 1.351 1 84.68 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . E 3 8.234 -36.528 1.276 1 83.08 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . E 3 8.77 -38.363 2.728 1 83.26 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . E 3 9.772 -39.33 3.007 1 83.57 ? O3 GOL 701 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #