data_6GYF # _model_server_result.job_id w1OLuVqaIGhboHIb2sTw0g _model_server_result.datetime_utc '2024-10-30 22:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6GYF # _exptl.entry_id 6GYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.227 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GYF _cell.length_a 165.09 _cell.length_b 165.09 _cell.length_c 193.05 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C11 H16 N2 O8 P 1' _chem_comp.formula_weight 335.227 _chem_comp.id NMN _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NICOTINAMIDE MONONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P NMN doub 235 n n P O1P NMN sing 236 n n P O2P NMN sing 237 n n P O5R NMN sing 238 n n O1P H1PO NMN sing 239 n n O2P H2PO NMN sing 240 n n O5R C5R NMN sing 241 n n C5R C4R NMN sing 242 n n C5R H5R1 NMN sing 243 n n C5R H5R2 NMN sing 244 n n C4R O4R NMN sing 245 n n C4R C3R NMN sing 246 n n C4R H4RC NMN sing 247 n n O4R C1R NMN sing 248 n n C3R O3R NMN sing 249 n n C3R C2R NMN sing 250 n n C3R H3RC NMN sing 251 n n O3R H3RO NMN sing 252 n n C2R O2R NMN sing 253 n n C2R C1R NMN sing 254 n n C2R H2RC NMN sing 255 n n O2R H2RO NMN sing 256 n n C1R N1 NMN sing 257 n n C1R H1RC NMN sing 258 n n N1 C2 NMN doub 259 n y N1 C6 NMN sing 260 n y C2 C3 NMN sing 261 n y C2 HC2 NMN sing 262 n n C3 C7 NMN sing 263 n n C3 C4 NMN doub 264 n y C7 O7 NMN doub 265 n n C7 N7 NMN sing 266 n n N7 HN71 NMN sing 267 n n N7 HN72 NMN sing 268 n n C4 C5 NMN sing 269 n y C4 HC4 NMN sing 270 n n C5 C6 NMN doub 271 n y C5 HC5 NMN sing 272 n n C6 HC6 NMN sing 273 n n # _atom_sites.entry_id 6GYF _atom_sites.fract_transf_matrix[1][1] 0.006057 _atom_sites.fract_transf_matrix[1][2] 0.003497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NMN A 1 401 1 NMN NMN . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 4 SO4 SO4 . F 4 MG A 1 404 1 MG MG . G 4 MG A 1 405 3 MG MG . H 2 NMN B 1 401 2 NMN NMN . I 3 SO4 B 1 402 3 SO4 SO4 . J 3 SO4 B 1 403 5 SO4 SO4 . K 4 MG B 1 404 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P NMN . . . C 2 -11.063 48.329 23.818 1 139.47 ? O3P NMN 401 A 1 HETATM 2 P P NMN . . . C 2 -9.611 48.742 23.776 1 143.06 ? P NMN 401 A 1 HETATM 3 O O1P NMN . . . C 2 -8.635 47.607 23.977 1 144.33 ? O1P NMN 401 A 1 HETATM 4 O O2P NMN . . . C 2 -9.293 49.986 24.569 1 137.13 ? O2P NMN 401 A 1 HETATM 5 O O5R NMN . . . C 2 -9.379 49.188 22.246 1 131.35 ? O5R NMN 401 A 1 HETATM 6 C C5R NMN . . . C 2 -9.522 50.553 21.862 1 118.47 ? C5R NMN 401 A 1 HETATM 7 C C4R NMN . . . C 2 -9.551 50.654 20.342 1 100.39 ? C4R NMN 401 A 1 HETATM 8 O O4R NMN . . . C 2 -10.189 51.874 19.953 1 91.57 ? O4R NMN 401 A 1 HETATM 9 C C3R NMN . . . C 2 -8.144 50.658 19.764 1 92.04 ? C3R NMN 401 A 1 HETATM 10 O O3R NMN . . . C 2 -7.997 49.562 18.851 1 91.47 ? O3R NMN 401 A 1 HETATM 11 C C2R NMN . . . C 2 -7.968 52.012 19.09 1 90.81 ? C2R NMN 401 A 1 HETATM 12 O O2R NMN . . . C 2 -7.625 51.903 17.702 1 89.22 ? O2R NMN 401 A 1 HETATM 13 C C1R NMN . . . C 2 -9.299 52.734 19.237 1 88.79 ? C1R NMN 401 A 1 HETATM 14 N N1 NMN . . . C 2 -9.106 53.977 19.987 1 79.71 ? N1 NMN 401 A 1 HETATM 15 C C2 NMN . . . C 2 -9.434 55.147 19.424 1 77.4 ? C2 NMN 401 A 1 HETATM 16 C C3 NMN . . . C 2 -9.261 56.34 20.116 1 77.86 ? C3 NMN 401 A 1 HETATM 17 C C7 NMN . . . C 2 -9.631 57.644 19.475 1 84.5 ? C7 NMN 401 A 1 HETATM 18 O O7 NMN . . . C 2 -9.572 58.671 20.131 1 93.78 ? O7 NMN 401 A 1 HETATM 19 N N7 NMN . . . C 2 -10.016 57.647 18.2 1 83.87 ? N7 NMN 401 A 1 HETATM 20 C C4 NMN . . . C 2 -8.743 56.316 21.403 1 71.48 ? C4 NMN 401 A 1 HETATM 21 C C5 NMN . . . C 2 -8.411 55.09 21.964 1 72.69 ? C5 NMN 401 A 1 HETATM 22 C C6 NMN . . . C 2 -8.605 53.927 21.228 1 71.29 ? C6 NMN 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #