data_6GYF
#
_model_server_result.job_id            Fu2gujseDcvfHXNWi8VjDQ 
_model_server_result.datetime_utc      '2024-10-30 22:12:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    6GYF 
#
_exptl.entry_id    6GYF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.227 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GYF 
_cell.length_a            165.09 
_cell.length_b            165.09 
_cell.length_c            193.05 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G 1 1 
B,H,I,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C11 H16 N2 O8 P 1' 
_chem_comp.formula_weight    335.227 
_chem_comp.id                NMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'NICOTINAMIDE MONONUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P NMN doub 235 n n 
P O1P NMN sing 236 n n 
P O2P NMN sing 237 n n 
P O5R NMN sing 238 n n 
O1P H1PO NMN sing 239 n n 
O2P H2PO NMN sing 240 n n 
O5R C5R NMN sing 241 n n 
C5R C4R NMN sing 242 n n 
C5R H5R1 NMN sing 243 n n 
C5R H5R2 NMN sing 244 n n 
C4R O4R NMN sing 245 n n 
C4R C3R NMN sing 246 n n 
C4R H4RC NMN sing 247 n n 
O4R C1R NMN sing 248 n n 
C3R O3R NMN sing 249 n n 
C3R C2R NMN sing 250 n n 
C3R H3RC NMN sing 251 n n 
O3R H3RO NMN sing 252 n n 
C2R O2R NMN sing 253 n n 
C2R C1R NMN sing 254 n n 
C2R H2RC NMN sing 255 n n 
O2R H2RO NMN sing 256 n n 
C1R N1 NMN sing 257 n n 
C1R H1RC NMN sing 258 n n 
N1 C2 NMN doub 259 n y 
N1 C6 NMN sing 260 n y 
C2 C3 NMN sing 261 n y 
C2 HC2 NMN sing 262 n n 
C3 C7 NMN sing 263 n n 
C3 C4 NMN doub 264 n y 
C7 O7 NMN doub 265 n n 
C7 N7 NMN sing 266 n n 
N7 HN71 NMN sing 267 n n 
N7 HN72 NMN sing 268 n n 
C4 C5 NMN sing 269 n y 
C4 HC4 NMN sing 270 n n 
C5 C6 NMN doub 271 n y 
C5 HC5 NMN sing 272 n n 
C6 HC6 NMN sing 273 n n 
#
_atom_sites.entry_id                     6GYF 
_atom_sites.fract_transf_matrix[1][1]    0.006057 
_atom_sites.fract_transf_matrix[1][2]    0.003497 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006994 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00518 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NMN A 1 401 1 NMN NMN . 
D 3 SO4 A 1 402 1 SO4 SO4 . 
E 3 SO4 A 1 403 4 SO4 SO4 . 
F 4 MG A 1 404 1 MG MG . 
G 4 MG A 1 405 3 MG MG . 
H 2 NMN B 1 401 2 NMN NMN . 
I 3 SO4 B 1 402 3 SO4 SO4 . 
J 3 SO4 B 1 403 5 SO4 SO4 . 
K 4 MG B 1 404 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P NMN . . . H 2 25.75 55.843 5.787 1 130.07 ? O3P NMN 401 B 1 
HETATM 2 P P NMN . . . H 2 24.572 55.77 6.73 1 130.67 ? P NMN 401 B 1 
HETATM 3 O O1P NMN . . . H 2 24.601 54.593 7.674 1 120.2 ? O1P NMN 401 B 1 
HETATM 4 O O2P NMN . . . H 2 24.215 57.084 7.383 1 126.1 ? O2P NMN 401 B 1 
HETATM 5 O O5R NMN . . . H 2 23.321 55.463 5.764 1 129.87 ? O5R NMN 401 B 1 
HETATM 6 C C5R NMN . . . H 2 23.242 54.229 5.055 1 123.49 ? C5R NMN 401 B 1 
HETATM 7 C C4R NMN . . . H 2 21.908 54.141 4.324 1 114.87 ? C4R NMN 401 B 1 
HETATM 8 O O4R NMN . . . H 2 21.83 52.902 3.615 1 107.52 ? O4R NMN 401 B 1 
HETATM 9 C C3R NMN . . . H 2 20.74 54.196 5.298 1 104.22 ? C3R NMN 401 B 1 
HETATM 10 O O3R NMN . . . H 2 19.901 55.314 4.984 1 105 ? O3R NMN 401 B 1 
HETATM 11 C C2R NMN . . . H 2 20.018 52.861 5.168 1 91.65 ? C2R NMN 401 B 1 
HETATM 12 O O2R NMN . . . H 2 18.647 53.007 4.773 1 82.75 ? O2R NMN 401 B 1 
HETATM 13 C C1R NMN . . . H 2 20.775 52.072 4.11 1 95.94 ? C1R NMN 401 B 1 
HETATM 14 N N1 NMN . . . H 2 21.343 50.863 4.709 1 88.8 ? N1 NMN 401 B 1 
HETATM 15 C C2 NMN . . . H 2 21.064 49.667 4.175 1 79.51 ? C2 NMN 401 B 1 
HETATM 16 C C3 NMN . . . H 2 21.59 48.504 4.725 1 74.95 ? C3 NMN 401 B 1 
HETATM 17 C C7 NMN . . . H 2 21.271 47.17 4.119 1 79.21 ? C7 NMN 401 B 1 
HETATM 18 O O7 NMN . . . H 2 21.868 46.18 4.507 1 80.46 ? O7 NMN 401 B 1 
HETATM 19 N N7 NMN . . . H 2 20.34 47.102 3.168 1 73.38 ? N7 NMN 401 B 1 
HETATM 20 C C4 NMN . . . H 2 22.413 48.586 5.839 1 71.23 ? C4 NMN 401 B 1 
HETATM 21 C C5 NMN . . . H 2 22.687 49.837 6.374 1 77.96 ? C5 NMN 401 B 1 
HETATM 22 C C6 NMN . . . H 2 22.134 50.968 5.784 1 80.33 ? C6 NMN 401 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#