data_6GYN # _model_server_result.job_id ajXih6rifH6qr-xOXrupkg _model_server_result.datetime_utc '2024-11-27 01:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 6GYN # _exptl.entry_id 6GYN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 28 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GYN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 367 n n P O14 PC1 doub 368 n n P O13 PC1 sing 369 n n P O11 PC1 sing 370 n n O13 C11 PC1 sing 371 n n C11 C12 PC1 sing 372 n n C11 H111 PC1 sing 373 n n C11 H112 PC1 sing 374 n n C12 N PC1 sing 375 n n C12 H121 PC1 sing 376 n n C12 H122 PC1 sing 377 n n N C13 PC1 sing 378 n n N C14 PC1 sing 379 n n N C15 PC1 sing 380 n n C13 H131 PC1 sing 381 n n C13 H132 PC1 sing 382 n n C13 H133 PC1 sing 383 n n C14 H141 PC1 sing 384 n n C14 H142 PC1 sing 385 n n C14 H143 PC1 sing 386 n n C15 H151 PC1 sing 387 n n C15 H152 PC1 sing 388 n n C15 H153 PC1 sing 389 n n O11 C1 PC1 sing 390 n n C1 C2 PC1 sing 391 n n C1 H11 PC1 sing 392 n n C1 H12 PC1 sing 393 n n C2 O21 PC1 sing 394 n n C2 C3 PC1 sing 395 n n C2 H2 PC1 sing 396 n n O21 C21 PC1 sing 397 n n C21 O22 PC1 doub 398 n n C21 C22 PC1 sing 399 n n C22 C23 PC1 sing 400 n n C22 H221 PC1 sing 401 n n C22 H222 PC1 sing 402 n n C23 C24 PC1 sing 403 n n C23 H231 PC1 sing 404 n n C23 H232 PC1 sing 405 n n C24 C25 PC1 sing 406 n n C24 H241 PC1 sing 407 n n C24 H242 PC1 sing 408 n n C25 C26 PC1 sing 409 n n C25 H251 PC1 sing 410 n n C25 H252 PC1 sing 411 n n C26 C27 PC1 sing 412 n n C26 H261 PC1 sing 413 n n C26 H262 PC1 sing 414 n n C27 C28 PC1 sing 415 n n C27 H271 PC1 sing 416 n n C27 H272 PC1 sing 417 n n C28 C29 PC1 sing 418 n n C28 H281 PC1 sing 419 n n C28 H282 PC1 sing 420 n n C29 C2A PC1 sing 421 n n C29 H291 PC1 sing 422 n n C29 H292 PC1 sing 423 n n C2A C2B PC1 sing 424 n n C2A H2A1 PC1 sing 425 n n C2A H2A2 PC1 sing 426 n n C2B C2C PC1 sing 427 n n C2B H2B1 PC1 sing 428 n n C2B H2B2 PC1 sing 429 n n C2C C2D PC1 sing 430 n n C2C H2C1 PC1 sing 431 n n C2C H2C2 PC1 sing 432 n n C2D C2E PC1 sing 433 n n C2D H2D1 PC1 sing 434 n n C2D H2D2 PC1 sing 435 n n C2E C2F PC1 sing 436 n n C2E H2E1 PC1 sing 437 n n C2E H2E2 PC1 sing 438 n n C2F C2G PC1 sing 439 n n C2F H2F1 PC1 sing 440 n n C2F H2F2 PC1 sing 441 n n C2G C2H PC1 sing 442 n n C2G H2G1 PC1 sing 443 n n C2G H2G2 PC1 sing 444 n n C2H C2I PC1 sing 445 n n C2H H2H1 PC1 sing 446 n n C2H H2H2 PC1 sing 447 n n C2I H2I1 PC1 sing 448 n n C2I H2I2 PC1 sing 449 n n C2I H2I3 PC1 sing 450 n n C3 O31 PC1 sing 451 n n C3 H31 PC1 sing 452 n n C3 H32 PC1 sing 453 n n O31 C31 PC1 sing 454 n n C31 O32 PC1 doub 455 n n C31 C32 PC1 sing 456 n n C32 C33 PC1 sing 457 n n C32 H321 PC1 sing 458 n n C32 H322 PC1 sing 459 n n C33 C34 PC1 sing 460 n n C33 H331 PC1 sing 461 n n C33 H332 PC1 sing 462 n n C34 C35 PC1 sing 463 n n C34 H341 PC1 sing 464 n n C34 H342 PC1 sing 465 n n C35 C36 PC1 sing 466 n n C35 H351 PC1 sing 467 n n C35 H352 PC1 sing 468 n n C36 C37 PC1 sing 469 n n C36 H361 PC1 sing 470 n n C36 H362 PC1 sing 471 n n C37 C38 PC1 sing 472 n n C37 H371 PC1 sing 473 n n C37 H372 PC1 sing 474 n n C38 C39 PC1 sing 475 n n C38 H381 PC1 sing 476 n n C38 H382 PC1 sing 477 n n C39 C3A PC1 sing 478 n n C39 H391 PC1 sing 479 n n C39 H392 PC1 sing 480 n n C3A C3B PC1 sing 481 n n C3A H3A1 PC1 sing 482 n n C3A H3A2 PC1 sing 483 n n C3B C3C PC1 sing 484 n n C3B H3B1 PC1 sing 485 n n C3B H3B2 PC1 sing 486 n n C3C C3D PC1 sing 487 n n C3C H3C1 PC1 sing 488 n n C3C H3C2 PC1 sing 489 n n C3D C3E PC1 sing 490 n n C3D H3D1 PC1 sing 491 n n C3D H3D2 PC1 sing 492 n n C3E C3F PC1 sing 493 n n C3E H3E1 PC1 sing 494 n n C3E H3E2 PC1 sing 495 n n C3F C3G PC1 sing 496 n n C3F H3F1 PC1 sing 497 n n C3F H3F2 PC1 sing 498 n n C3G C3H PC1 sing 499 n n C3G H3G1 PC1 sing 500 n n C3G H3G2 PC1 sing 501 n n C3H C3I PC1 sing 502 n n C3H H3H1 PC1 sing 503 n n C3H H3H2 PC1 sing 504 n n C3I H3I1 PC1 sing 505 n n C3I H3I2 PC1 sing 506 n n C3I H3I3 PC1 sing 507 n n # _atom_sites.entry_id 6GYN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PC1 A 1 801 913 PC1 PC1 . F 2 PC1 A 1 802 915 PC1 PC1 . G 2 PC1 A 1 803 920 PC1 PC1 . H 3 3PE A 1 804 931 3PE 3PE . I 3 3PE A 1 805 932 3PE 3PE . J 2 PC1 A 1 806 914 PC1 PC1 . K 2 PC1 A 1 807 919 PC1 PC1 . L 2 PC1 A 1 808 916 PC1 PC1 . M 2 PC1 A 1 809 918 PC1 PC1 . N 2 PC1 B 1 801 916 PC1 PC1 . O 2 PC1 B 1 802 918 PC1 PC1 . P 2 PC1 B 1 803 913 PC1 PC1 . Q 2 PC1 B 1 804 915 PC1 PC1 . R 2 PC1 B 1 805 920 PC1 PC1 . S 3 3PE B 1 806 931 3PE 3PE . T 3 3PE B 1 807 932 3PE 3PE . U 2 PC1 B 1 808 914 PC1 PC1 . V 2 PC1 B 1 809 919 PC1 PC1 . W 2 PC1 C 1 801 916 PC1 PC1 . X 2 PC1 C 1 802 918 PC1 PC1 . Y 2 PC1 C 1 803 913 PC1 PC1 . Z 2 PC1 C 1 804 915 PC1 PC1 . AA 2 PC1 C 1 805 920 PC1 PC1 . BA 3 3PE C 1 806 931 3PE 3PE . CA 3 3PE C 1 807 932 3PE 3PE . DA 2 PC1 C 1 808 914 PC1 PC1 . EA 2 PC1 C 1 809 919 PC1 PC1 . FA 2 PC1 D 1 801 914 PC1 PC1 . GA 2 PC1 D 1 802 919 PC1 PC1 . HA 2 PC1 D 1 803 916 PC1 PC1 . IA 2 PC1 D 1 804 918 PC1 PC1 . JA 2 PC1 D 1 805 913 PC1 PC1 . KA 2 PC1 D 1 806 915 PC1 PC1 . LA 2 PC1 D 1 807 920 PC1 PC1 . MA 3 3PE D 1 808 931 3PE 3PE . NA 3 3PE D 1 809 932 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . E 2 172.855 139.993 149.41 1 87.25 ? O12 PC1 801 A 1 HETATM 2 P P PC1 . . . E 2 171.986 138.802 149.294 1 87.25 ? P PC1 801 A 1 HETATM 3 O O14 PC1 . . . E 2 170.682 138.782 149.992 1 87.25 ? O14 PC1 801 A 1 HETATM 4 O O13 PC1 . . . E 2 172.844 137.512 149.671 1 87.25 ? O13 PC1 801 A 1 HETATM 5 C C11 PC1 . . . E 2 174.073 137.598 150.434 1 87.25 ? C11 PC1 801 A 1 HETATM 6 O O11 PC1 . . . E 2 171.788 138.485 147.746 1 87.25 ? O11 PC1 801 A 1 HETATM 7 C C1 PC1 . . . E 2 170.579 138.911 147.09 1 87.25 ? C1 PC1 801 A 1 HETATM 8 C C2 PC1 . . . E 2 170.544 138.27 145.732 1 87.25 ? C2 PC1 801 A 1 HETATM 9 O O21 PC1 . . . E 2 170.53 136.818 145.895 1 87.25 ? O21 PC1 801 A 1 HETATM 10 C C21 PC1 . . . E 2 169.339 136.208 145.882 1 87.25 ? C21 PC1 801 A 1 HETATM 11 O O22 PC1 . . . E 2 168.292 136.793 145.861 1 87.25 ? O22 PC1 801 A 1 HETATM 12 C C22 PC1 . . . E 2 169.491 134.717 145.881 1 87.25 ? C22 PC1 801 A 1 HETATM 13 C C23 PC1 . . . E 2 169.796 134.164 144.494 1 87.25 ? C23 PC1 801 A 1 HETATM 14 C C24 PC1 . . . E 2 168.767 134.571 143.449 1 87.25 ? C24 PC1 801 A 1 HETATM 15 C C25 PC1 . . . E 2 169.049 134.039 142.058 1 87.25 ? C25 PC1 801 A 1 HETATM 16 C C26 PC1 . . . E 2 168.049 134.492 141.011 1 87.25 ? C26 PC1 801 A 1 HETATM 17 C C3 PC1 . . . E 2 171.774 138.585 144.935 1 87.25 ? C3 PC1 801 A 1 HETATM 18 O O31 PC1 . . . E 2 171.71 137.752 143.758 1 87.25 ? O31 PC1 801 A 1 HETATM 19 C C31 PC1 . . . E 2 172.018 138.327 142.6 1 87.25 ? C31 PC1 801 A 1 HETATM 20 O O32 PC1 . . . E 2 172.388 139.461 142.499 1 87.25 ? O32 PC1 801 A 1 HETATM 21 C C32 PC1 . . . E 2 171.826 137.381 141.457 1 87.25 ? C32 PC1 801 A 1 HETATM 22 C C33 PC1 . . . E 2 171.819 138.079 140.107 1 87.25 ? C33 PC1 801 A 1 HETATM 23 C C34 PC1 . . . E 2 171.26 137.205 139.017 1 87.25 ? C34 PC1 801 A 1 HETATM 24 C C35 PC1 . . . E 2 171.287 137.833 137.65 1 87.25 ? C35 PC1 801 A 1 HETATM 25 C C36 PC1 . . . E 2 172.676 138.07 137.133 1 87.25 ? C36 PC1 801 A 1 HETATM 26 C C37 PC1 . . . E 2 172.729 138.628 135.729 1 87.25 ? C37 PC1 801 A 1 HETATM 27 C C38 PC1 . . . E 2 172.13 137.727 134.676 1 87.25 ? C38 PC1 801 A 1 HETATM 28 C C39 PC1 . . . E 2 172.589 138.059 133.276 1 87.25 ? C39 PC1 801 A 1 HETATM 29 C C3A PC1 . . . E 2 172.059 137.124 132.222 1 87.25 ? C3A PC1 801 A 1 HETATM 30 C C3B PC1 . . . E 2 170.601 137.334 131.913 1 87.25 ? C3B PC1 801 A 1 HETATM 31 C C3C PC1 . . . E 2 170.327 138.608 131.15 1 87.25 ? C3C PC1 801 A 1 HETATM 32 C C3D PC1 . . . E 2 170.932 138.638 129.759 1 87.25 ? C3D PC1 801 A 1 HETATM 33 C C3E PC1 . . . E 2 170.654 139.918 129.007 1 87.25 ? C3E PC1 801 A 1 HETATM 34 C C3F PC1 . . . E 2 171.348 140.017 127.673 1 87.25 ? C3F PC1 801 A 1 HETATM 35 C C3G PC1 . . . E 2 171.18 141.357 127.004 1 87.25 ? C3G PC1 801 A 1 HETATM 36 C C3H PC1 . . . E 2 171.955 141.505 125.722 1 87.25 ? C3H PC1 801 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #