data_6GYN
#
_model_server_result.job_id            -qb9cQUG3CEw6HQ8Zo7AmA 
_model_server_result.datetime_utc      '2024-11-26 23:48:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gyn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":805}' 
#
_entry.id    6GYN 
#
_exptl.entry_id    6GYN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GYN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GYN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 367 n n 
P O14 PC1 doub 368 n n 
P O13 PC1 sing 369 n n 
P O11 PC1 sing 370 n n 
O13 C11 PC1 sing 371 n n 
C11 C12 PC1 sing 372 n n 
C11 H111 PC1 sing 373 n n 
C11 H112 PC1 sing 374 n n 
C12 N PC1 sing 375 n n 
C12 H121 PC1 sing 376 n n 
C12 H122 PC1 sing 377 n n 
N C13 PC1 sing 378 n n 
N C14 PC1 sing 379 n n 
N C15 PC1 sing 380 n n 
C13 H131 PC1 sing 381 n n 
C13 H132 PC1 sing 382 n n 
C13 H133 PC1 sing 383 n n 
C14 H141 PC1 sing 384 n n 
C14 H142 PC1 sing 385 n n 
C14 H143 PC1 sing 386 n n 
C15 H151 PC1 sing 387 n n 
C15 H152 PC1 sing 388 n n 
C15 H153 PC1 sing 389 n n 
O11 C1 PC1 sing 390 n n 
C1 C2 PC1 sing 391 n n 
C1 H11 PC1 sing 392 n n 
C1 H12 PC1 sing 393 n n 
C2 O21 PC1 sing 394 n n 
C2 C3 PC1 sing 395 n n 
C2 H2 PC1 sing 396 n n 
O21 C21 PC1 sing 397 n n 
C21 O22 PC1 doub 398 n n 
C21 C22 PC1 sing 399 n n 
C22 C23 PC1 sing 400 n n 
C22 H221 PC1 sing 401 n n 
C22 H222 PC1 sing 402 n n 
C23 C24 PC1 sing 403 n n 
C23 H231 PC1 sing 404 n n 
C23 H232 PC1 sing 405 n n 
C24 C25 PC1 sing 406 n n 
C24 H241 PC1 sing 407 n n 
C24 H242 PC1 sing 408 n n 
C25 C26 PC1 sing 409 n n 
C25 H251 PC1 sing 410 n n 
C25 H252 PC1 sing 411 n n 
C26 C27 PC1 sing 412 n n 
C26 H261 PC1 sing 413 n n 
C26 H262 PC1 sing 414 n n 
C27 C28 PC1 sing 415 n n 
C27 H271 PC1 sing 416 n n 
C27 H272 PC1 sing 417 n n 
C28 C29 PC1 sing 418 n n 
C28 H281 PC1 sing 419 n n 
C28 H282 PC1 sing 420 n n 
C29 C2A PC1 sing 421 n n 
C29 H291 PC1 sing 422 n n 
C29 H292 PC1 sing 423 n n 
C2A C2B PC1 sing 424 n n 
C2A H2A1 PC1 sing 425 n n 
C2A H2A2 PC1 sing 426 n n 
C2B C2C PC1 sing 427 n n 
C2B H2B1 PC1 sing 428 n n 
C2B H2B2 PC1 sing 429 n n 
C2C C2D PC1 sing 430 n n 
C2C H2C1 PC1 sing 431 n n 
C2C H2C2 PC1 sing 432 n n 
C2D C2E PC1 sing 433 n n 
C2D H2D1 PC1 sing 434 n n 
C2D H2D2 PC1 sing 435 n n 
C2E C2F PC1 sing 436 n n 
C2E H2E1 PC1 sing 437 n n 
C2E H2E2 PC1 sing 438 n n 
C2F C2G PC1 sing 439 n n 
C2F H2F1 PC1 sing 440 n n 
C2F H2F2 PC1 sing 441 n n 
C2G C2H PC1 sing 442 n n 
C2G H2G1 PC1 sing 443 n n 
C2G H2G2 PC1 sing 444 n n 
C2H C2I PC1 sing 445 n n 
C2H H2H1 PC1 sing 446 n n 
C2H H2H2 PC1 sing 447 n n 
C2I H2I1 PC1 sing 448 n n 
C2I H2I2 PC1 sing 449 n n 
C2I H2I3 PC1 sing 450 n n 
C3 O31 PC1 sing 451 n n 
C3 H31 PC1 sing 452 n n 
C3 H32 PC1 sing 453 n n 
O31 C31 PC1 sing 454 n n 
C31 O32 PC1 doub 455 n n 
C31 C32 PC1 sing 456 n n 
C32 C33 PC1 sing 457 n n 
C32 H321 PC1 sing 458 n n 
C32 H322 PC1 sing 459 n n 
C33 C34 PC1 sing 460 n n 
C33 H331 PC1 sing 461 n n 
C33 H332 PC1 sing 462 n n 
C34 C35 PC1 sing 463 n n 
C34 H341 PC1 sing 464 n n 
C34 H342 PC1 sing 465 n n 
C35 C36 PC1 sing 466 n n 
C35 H351 PC1 sing 467 n n 
C35 H352 PC1 sing 468 n n 
C36 C37 PC1 sing 469 n n 
C36 H361 PC1 sing 470 n n 
C36 H362 PC1 sing 471 n n 
C37 C38 PC1 sing 472 n n 
C37 H371 PC1 sing 473 n n 
C37 H372 PC1 sing 474 n n 
C38 C39 PC1 sing 475 n n 
C38 H381 PC1 sing 476 n n 
C38 H382 PC1 sing 477 n n 
C39 C3A PC1 sing 478 n n 
C39 H391 PC1 sing 479 n n 
C39 H392 PC1 sing 480 n n 
C3A C3B PC1 sing 481 n n 
C3A H3A1 PC1 sing 482 n n 
C3A H3A2 PC1 sing 483 n n 
C3B C3C PC1 sing 484 n n 
C3B H3B1 PC1 sing 485 n n 
C3B H3B2 PC1 sing 486 n n 
C3C C3D PC1 sing 487 n n 
C3C H3C1 PC1 sing 488 n n 
C3C H3C2 PC1 sing 489 n n 
C3D C3E PC1 sing 490 n n 
C3D H3D1 PC1 sing 491 n n 
C3D H3D2 PC1 sing 492 n n 
C3E C3F PC1 sing 493 n n 
C3E H3E1 PC1 sing 494 n n 
C3E H3E2 PC1 sing 495 n n 
C3F C3G PC1 sing 496 n n 
C3F H3F1 PC1 sing 497 n n 
C3F H3F2 PC1 sing 498 n n 
C3G C3H PC1 sing 499 n n 
C3G H3G1 PC1 sing 500 n n 
C3G H3G2 PC1 sing 501 n n 
C3H C3I PC1 sing 502 n n 
C3H H3H1 PC1 sing 503 n n 
C3H H3H2 PC1 sing 504 n n 
C3I H3I1 PC1 sing 505 n n 
C3I H3I2 PC1 sing 506 n n 
C3I H3I3 PC1 sing 507 n n 
#
_atom_sites.entry_id                     6GYN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PC1 A 1 801 913 PC1 PC1 . 
F 2 PC1 A 1 802 915 PC1 PC1 . 
G 2 PC1 A 1 803 920 PC1 PC1 . 
H 3 3PE A 1 804 931 3PE 3PE . 
I 3 3PE A 1 805 932 3PE 3PE . 
J 2 PC1 A 1 806 914 PC1 PC1 . 
K 2 PC1 A 1 807 919 PC1 PC1 . 
L 2 PC1 A 1 808 916 PC1 PC1 . 
M 2 PC1 A 1 809 918 PC1 PC1 . 
N 2 PC1 B 1 801 916 PC1 PC1 . 
O 2 PC1 B 1 802 918 PC1 PC1 . 
P 2 PC1 B 1 803 913 PC1 PC1 . 
Q 2 PC1 B 1 804 915 PC1 PC1 . 
R 2 PC1 B 1 805 920 PC1 PC1 . 
S 3 3PE B 1 806 931 3PE 3PE . 
T 3 3PE B 1 807 932 3PE 3PE . 
U 2 PC1 B 1 808 914 PC1 PC1 . 
V 2 PC1 B 1 809 919 PC1 PC1 . 
W 2 PC1 C 1 801 916 PC1 PC1 . 
X 2 PC1 C 1 802 918 PC1 PC1 . 
Y 2 PC1 C 1 803 913 PC1 PC1 . 
Z 2 PC1 C 1 804 915 PC1 PC1 . 
AA 2 PC1 C 1 805 920 PC1 PC1 . 
BA 3 3PE C 1 806 931 3PE 3PE . 
CA 3 3PE C 1 807 932 3PE 3PE . 
DA 2 PC1 C 1 808 914 PC1 PC1 . 
EA 2 PC1 C 1 809 919 PC1 PC1 . 
FA 2 PC1 D 1 801 914 PC1 PC1 . 
GA 2 PC1 D 1 802 919 PC1 PC1 . 
HA 2 PC1 D 1 803 916 PC1 PC1 . 
IA 2 PC1 D 1 804 918 PC1 PC1 . 
JA 2 PC1 D 1 805 913 PC1 PC1 . 
KA 2 PC1 D 1 806 915 PC1 PC1 . 
LA 2 PC1 D 1 807 920 PC1 PC1 . 
MA 3 3PE D 1 808 931 3PE 3PE . 
NA 3 3PE D 1 809 932 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . JA 2 140.004 121.938 149.4 1 87.09 ? O12 PC1 805 D 1 
HETATM 2 P P PC1 . . . JA 2 138.813 122.807 149.283 1 87.09 ? P PC1 805 D 1 
HETATM 3 O O14 PC1 . . . JA 2 138.792 124.112 149.98 1 87.09 ? O14 PC1 805 D 1 
HETATM 4 O O13 PC1 . . . JA 2 137.523 121.95 149.66 1 87.09 ? O13 PC1 805 D 1 
HETATM 5 C C11 PC1 . . . JA 2 137.608 120.721 150.423 1 87.09 ? C11 PC1 805 D 1 
HETATM 6 O O11 PC1 . . . JA 2 138.497 123.005 147.734 1 87.09 ? O11 PC1 805 D 1 
HETATM 7 C C1 PC1 . . . JA 2 138.923 124.213 147.078 1 87.09 ? C1 PC1 805 D 1 
HETATM 8 C C2 PC1 . . . JA 2 138.282 124.248 145.72 1 87.09 ? C2 PC1 805 D 1 
HETATM 9 O O21 PC1 . . . JA 2 136.83 124.262 145.883 1 87.09 ? O21 PC1 805 D 1 
HETATM 10 C C21 PC1 . . . JA 2 136.22 125.453 145.869 1 87.09 ? C21 PC1 805 D 1 
HETATM 11 O O22 PC1 . . . JA 2 136.805 126.5 145.847 1 87.09 ? O22 PC1 805 D 1 
HETATM 12 C C22 PC1 . . . JA 2 134.73 125.301 145.867 1 87.09 ? C22 PC1 805 D 1 
HETATM 13 C C23 PC1 . . . JA 2 134.177 124.996 144.48 1 87.09 ? C23 PC1 805 D 1 
HETATM 14 C C24 PC1 . . . JA 2 134.585 126.024 143.435 1 87.09 ? C24 PC1 805 D 1 
HETATM 15 C C25 PC1 . . . JA 2 134.053 125.742 142.044 1 87.09 ? C25 PC1 805 D 1 
HETATM 16 C C26 PC1 . . . JA 2 134.506 126.741 140.997 1 87.09 ? C26 PC1 805 D 1 
HETATM 17 C C3 PC1 . . . JA 2 138.597 123.017 144.923 1 87.09 ? C3 PC1 805 D 1 
HETATM 18 O O31 PC1 . . . JA 2 137.765 123.082 143.746 1 87.09 ? O31 PC1 805 D 1 
HETATM 19 C C31 PC1 . . . JA 2 138.34 122.773 142.588 1 87.09 ? C31 PC1 805 D 1 
HETATM 20 O O32 PC1 . . . JA 2 139.474 122.403 142.489 1 87.09 ? O32 PC1 805 D 1 
HETATM 21 C C32 PC1 . . . JA 2 137.395 122.964 141.445 1 87.09 ? C32 PC1 805 D 1 
HETATM 22 C C33 PC1 . . . JA 2 138.093 122.97 140.096 1 87.09 ? C33 PC1 805 D 1 
HETATM 23 C C34 PC1 . . . JA 2 137.22 123.529 139.004 1 87.09 ? C34 PC1 805 D 1 
HETATM 24 C C35 PC1 . . . JA 2 137.848 123.502 137.638 1 87.09 ? C35 PC1 805 D 1 
HETATM 25 C C36 PC1 . . . JA 2 138.085 122.112 137.122 1 87.09 ? C36 PC1 805 D 1 
HETATM 26 C C37 PC1 . . . JA 2 138.644 122.058 135.718 1 87.09 ? C37 PC1 805 D 1 
HETATM 27 C C38 PC1 . . . JA 2 137.744 122.657 134.664 1 87.09 ? C38 PC1 805 D 1 
HETATM 28 C C39 PC1 . . . JA 2 138.076 122.198 133.265 1 87.09 ? C39 PC1 805 D 1 
HETATM 29 C C3A PC1 . . . JA 2 137.142 122.727 132.21 1 87.09 ? C3A PC1 805 D 1 
HETATM 30 C C3B PC1 . . . JA 2 137.352 124.185 131.9 1 87.09 ? C3B PC1 805 D 1 
HETATM 31 C C3C PC1 . . . JA 2 138.626 124.459 131.138 1 87.09 ? C3C PC1 805 D 1 
HETATM 32 C C3D PC1 . . . JA 2 138.657 123.853 129.748 1 87.09 ? C3D PC1 805 D 1 
HETATM 33 C C3E PC1 . . . JA 2 139.937 124.131 128.995 1 87.09 ? C3E PC1 805 D 1 
HETATM 34 C C3F PC1 . . . JA 2 140.036 123.436 127.662 1 87.09 ? C3F PC1 805 D 1 
HETATM 35 C C3G PC1 . . . JA 2 141.377 123.604 126.994 1 87.09 ? C3G PC1 805 D 1 
HETATM 36 C C3H PC1 . . . JA 2 141.525 122.828 125.711 1 87.09 ? C3H PC1 805 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#