data_6GYO
#
_model_server_result.job_id            6-Z348hH_slymfXhk7t90A 
_model_server_result.datetime_utc      '2024-10-19 16:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gyo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"SA","auth_seq_id":801}' 
#
_entry.id    6GYO 
#
_exptl.entry_id    6GYO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GYO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 T N N 
? 2 FA N N 
? 2 SA N N 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 202 n n 
P O2P CMP sing 203 n n 
P O5' CMP sing 204 n n 
P O3' CMP sing 205 n n 
O2P HOP2 CMP sing 206 n n 
O5' C5' CMP sing 207 n n 
C5' C4' CMP sing 208 n n 
C5' "H5'1" CMP sing 209 n n 
C5' "H5'2" CMP sing 210 n n 
C4' O4' CMP sing 211 n n 
C4' C3' CMP sing 212 n n 
C4' H4' CMP sing 213 n n 
O4' C1' CMP sing 214 n n 
C3' O3' CMP sing 215 n n 
C3' C2' CMP sing 216 n n 
C3' H3' CMP sing 217 n n 
C2' O2' CMP sing 218 n n 
C2' C1' CMP sing 219 n n 
C2' H2' CMP sing 220 n n 
O2' HO2' CMP sing 221 n n 
C1' N9 CMP sing 222 n n 
C1' H1' CMP sing 223 n n 
N9 C8 CMP sing 224 n y 
N9 C4 CMP sing 225 n y 
C8 N7 CMP doub 226 n y 
C8 H8 CMP sing 227 n n 
N7 C5 CMP sing 228 n y 
C5 C6 CMP sing 229 n y 
C5 C4 CMP doub 230 n y 
C6 N6 CMP sing 231 n n 
C6 N1 CMP doub 232 n y 
N6 HN61 CMP sing 233 n n 
N6 HN62 CMP sing 234 n n 
N1 C2 CMP sing 235 n y 
C2 N3 CMP doub 236 n y 
C2 H2 CMP sing 237 n n 
N3 C4 CMP sing 238 n y 
#
_atom_sites.entry_id                     6GYO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CMP A 1 801 801 CMP CMP . 
F 3 PC1 A 1 809 913 PC1 PC1 . 
G 3 PC1 A 1 803 915 PC1 PC1 . 
H 3 PC1 A 1 804 919 PC1 PC1 . 
I 3 PC1 A 1 805 920 PC1 PC1 . 
J 4 PIE A 1 812 930 PIE PIE . 
K 5 3PE A 1 810 931 3PE 3PE . 
L 5 3PE A 1 811 932 3PE 3PE . 
M 3 PC1 A 1 806 914 PC1 PC1 . 
N 3 PC1 A 1 807 916 PC1 PC1 . 
O 3 PC1 A 1 808 918 PC1 PC1 . 
P 6 UNX A 1 802 901 UNX ZN . 
Q 6 UNX B 1 802 901 UNX ZN . 
R 3 PC1 B 1 808 916 PC1 PC1 . 
S 3 PC1 B 1 809 918 PC1 PC1 . 
T 2 CMP B 1 801 801 CMP CMP . 
U 3 PC1 B 1 804 913 PC1 PC1 . 
V 3 PC1 B 1 805 915 PC1 PC1 . 
W 3 PC1 B 1 806 919 PC1 PC1 . 
X 3 PC1 B 1 807 920 PC1 PC1 . 
Y 4 PIE B 1 812 930 PIE PIE . 
Z 5 3PE B 1 811 931 3PE 3PE . 
AA 5 3PE B 1 810 932 3PE 3PE . 
BA 3 PC1 B 1 803 914 PC1 PC1 . 
CA 6 UNX C 1 802 901 UNX ZN . 
DA 3 PC1 C 1 808 916 PC1 PC1 . 
EA 3 PC1 C 1 809 918 PC1 PC1 . 
FA 2 CMP C 1 801 801 CMP CMP . 
GA 3 PC1 C 1 804 913 PC1 PC1 . 
HA 3 PC1 C 1 805 915 PC1 PC1 . 
IA 3 PC1 C 1 806 919 PC1 PC1 . 
JA 3 PC1 C 1 807 920 PC1 PC1 . 
KA 4 PIE C 1 812 930 PIE PIE . 
LA 5 3PE C 1 811 931 3PE 3PE . 
MA 5 3PE C 1 810 932 3PE 3PE . 
NA 3 PC1 C 1 803 914 PC1 PC1 . 
OA 6 UNX D 1 802 901 UNX ZN . 
PA 3 PC1 D 1 804 914 PC1 PC1 . 
QA 3 PC1 D 1 809 916 PC1 PC1 . 
RA 3 PC1 D 1 803 918 PC1 PC1 . 
SA 2 CMP D 1 801 801 CMP CMP . 
TA 3 PC1 D 1 805 913 PC1 PC1 . 
UA 3 PC1 D 1 806 915 PC1 PC1 . 
VA 3 PC1 D 1 807 919 PC1 PC1 . 
WA 3 PC1 D 1 808 920 PC1 PC1 . 
XA 4 PIE D 1 812 930 PIE PIE . 
YA 5 3PE D 1 810 931 3PE 3PE . 
ZA 5 3PE D 1 811 932 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . SA 2 129.558 126.772 98.583 1 86.45 ? P CMP 801 D 1 
HETATM 2 O O1P CMP . . . SA 2 128.518 126.596 97.562 1 86.45 ? O1P CMP 801 D 1 
HETATM 3 O O2P CMP . . . SA 2 130.702 127.738 98.332 1 86.45 ? O2P CMP 801 D 1 
HETATM 4 O O5' CMP . . . SA 2 128.773 127.253 99.891 1 86.45 ? O5' CMP 801 D 1 
HETATM 5 C C5' CMP . . . SA 2 127.965 126.352 100.635 1 86.45 ? C5' CMP 801 D 1 
HETATM 6 C C4' CMP . . . SA 2 128.702 125.064 100.751 1 86.45 ? C4' CMP 801 D 1 
HETATM 7 O O4' CMP . . . SA 2 127.891 123.973 101.219 1 86.45 ? O4' CMP 801 D 1 
HETATM 8 C C3' CMP . . . SA 2 129.199 124.562 99.433 1 86.45 ? C3' CMP 801 D 1 
HETATM 9 O O3' CMP . . . SA 2 130.22 125.389 98.927 1 86.45 ? O3' CMP 801 D 1 
HETATM 10 C C2' CMP . . . SA 2 129.581 123.132 99.771 1 86.45 ? C2' CMP 801 D 1 
HETATM 11 O O2' CMP . . . SA 2 130.817 123.095 100.461 1 86.45 ? O2' CMP 801 D 1 
HETATM 12 C C1' CMP . . . SA 2 128.468 122.765 100.764 1 86.45 ? C1' CMP 801 D 1 
HETATM 13 N N9 CMP . . . SA 2 127.431 121.92 100.158 1 86.45 ? N9 CMP 801 D 1 
HETATM 14 C C8 CMP . . . SA 2 126.421 122.297 99.314 1 86.45 ? C8 CMP 801 D 1 
HETATM 15 N N7 CMP . . . SA 2 125.644 121.31 98.94 1 86.45 ? N7 CMP 801 D 1 
HETATM 16 C C5 CMP . . . SA 2 126.179 120.208 99.585 1 86.45 ? C5 CMP 801 D 1 
HETATM 17 C C6 CMP . . . SA 2 125.81 118.851 99.615 1 86.45 ? C6 CMP 801 D 1 
HETATM 18 N N6 CMP . . . SA 2 124.752 118.357 98.966 1 86.45 ? N6 CMP 801 D 1 
HETATM 19 N N1 CMP . . . SA 2 126.56 118.011 100.359 1 86.45 ? N1 CMP 801 D 1 
HETATM 20 C C2 CMP . . . SA 2 127.605 118.505 101.029 1 86.45 ? C2 CMP 801 D 1 
HETATM 21 N N3 CMP . . . SA 2 128.043 119.763 101.082 1 86.45 ? N3 CMP 801 D 1 
HETATM 22 C C4 CMP . . . SA 2 127.285 120.569 100.337 1 86.45 ? C4 CMP 801 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#