data_6GYO
#
_model_server_result.job_id            3EfCpyIFKgr3jVqpYqVV0Q 
_model_server_result.datetime_utc      '2024-10-19 16:33:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gyo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":804}' 
#
_entry.id    6GYO 
#
_exptl.entry_id    6GYO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GYO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 R N N 
? 3 S N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 BA N N 
? 3 DA N N 
? 3 EA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 JA N N 
? 3 NA N N 
? 3 PA N N 
? 3 QA N N 
? 3 RA N N 
? 3 TA N N 
? 3 UA N N 
? 3 VA N N 
? 3 WA N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 404 n n 
P O14 PC1 doub 405 n n 
P O13 PC1 sing 406 n n 
P O11 PC1 sing 407 n n 
O13 C11 PC1 sing 408 n n 
C11 C12 PC1 sing 409 n n 
C11 H111 PC1 sing 410 n n 
C11 H112 PC1 sing 411 n n 
C12 N PC1 sing 412 n n 
C12 H121 PC1 sing 413 n n 
C12 H122 PC1 sing 414 n n 
N C13 PC1 sing 415 n n 
N C14 PC1 sing 416 n n 
N C15 PC1 sing 417 n n 
C13 H131 PC1 sing 418 n n 
C13 H132 PC1 sing 419 n n 
C13 H133 PC1 sing 420 n n 
C14 H141 PC1 sing 421 n n 
C14 H142 PC1 sing 422 n n 
C14 H143 PC1 sing 423 n n 
C15 H151 PC1 sing 424 n n 
C15 H152 PC1 sing 425 n n 
C15 H153 PC1 sing 426 n n 
O11 C1 PC1 sing 427 n n 
C1 C2 PC1 sing 428 n n 
C1 H11 PC1 sing 429 n n 
C1 H12 PC1 sing 430 n n 
C2 O21 PC1 sing 431 n n 
C2 C3 PC1 sing 432 n n 
C2 H2 PC1 sing 433 n n 
O21 C21 PC1 sing 434 n n 
C21 O22 PC1 doub 435 n n 
C21 C22 PC1 sing 436 n n 
C22 C23 PC1 sing 437 n n 
C22 H221 PC1 sing 438 n n 
C22 H222 PC1 sing 439 n n 
C23 C24 PC1 sing 440 n n 
C23 H231 PC1 sing 441 n n 
C23 H232 PC1 sing 442 n n 
C24 C25 PC1 sing 443 n n 
C24 H241 PC1 sing 444 n n 
C24 H242 PC1 sing 445 n n 
C25 C26 PC1 sing 446 n n 
C25 H251 PC1 sing 447 n n 
C25 H252 PC1 sing 448 n n 
C26 C27 PC1 sing 449 n n 
C26 H261 PC1 sing 450 n n 
C26 H262 PC1 sing 451 n n 
C27 C28 PC1 sing 452 n n 
C27 H271 PC1 sing 453 n n 
C27 H272 PC1 sing 454 n n 
C28 C29 PC1 sing 455 n n 
C28 H281 PC1 sing 456 n n 
C28 H282 PC1 sing 457 n n 
C29 C2A PC1 sing 458 n n 
C29 H291 PC1 sing 459 n n 
C29 H292 PC1 sing 460 n n 
C2A C2B PC1 sing 461 n n 
C2A H2A1 PC1 sing 462 n n 
C2A H2A2 PC1 sing 463 n n 
C2B C2C PC1 sing 464 n n 
C2B H2B1 PC1 sing 465 n n 
C2B H2B2 PC1 sing 466 n n 
C2C C2D PC1 sing 467 n n 
C2C H2C1 PC1 sing 468 n n 
C2C H2C2 PC1 sing 469 n n 
C2D C2E PC1 sing 470 n n 
C2D H2D1 PC1 sing 471 n n 
C2D H2D2 PC1 sing 472 n n 
C2E C2F PC1 sing 473 n n 
C2E H2E1 PC1 sing 474 n n 
C2E H2E2 PC1 sing 475 n n 
C2F C2G PC1 sing 476 n n 
C2F H2F1 PC1 sing 477 n n 
C2F H2F2 PC1 sing 478 n n 
C2G C2H PC1 sing 479 n n 
C2G H2G1 PC1 sing 480 n n 
C2G H2G2 PC1 sing 481 n n 
C2H C2I PC1 sing 482 n n 
C2H H2H1 PC1 sing 483 n n 
C2H H2H2 PC1 sing 484 n n 
C2I H2I1 PC1 sing 485 n n 
C2I H2I2 PC1 sing 486 n n 
C2I H2I3 PC1 sing 487 n n 
C3 O31 PC1 sing 488 n n 
C3 H31 PC1 sing 489 n n 
C3 H32 PC1 sing 490 n n 
O31 C31 PC1 sing 491 n n 
C31 O32 PC1 doub 492 n n 
C31 C32 PC1 sing 493 n n 
C32 C33 PC1 sing 494 n n 
C32 H321 PC1 sing 495 n n 
C32 H322 PC1 sing 496 n n 
C33 C34 PC1 sing 497 n n 
C33 H331 PC1 sing 498 n n 
C33 H332 PC1 sing 499 n n 
C34 C35 PC1 sing 500 n n 
C34 H341 PC1 sing 501 n n 
C34 H342 PC1 sing 502 n n 
C35 C36 PC1 sing 503 n n 
C35 H351 PC1 sing 504 n n 
C35 H352 PC1 sing 505 n n 
C36 C37 PC1 sing 506 n n 
C36 H361 PC1 sing 507 n n 
C36 H362 PC1 sing 508 n n 
C37 C38 PC1 sing 509 n n 
C37 H371 PC1 sing 510 n n 
C37 H372 PC1 sing 511 n n 
C38 C39 PC1 sing 512 n n 
C38 H381 PC1 sing 513 n n 
C38 H382 PC1 sing 514 n n 
C39 C3A PC1 sing 515 n n 
C39 H391 PC1 sing 516 n n 
C39 H392 PC1 sing 517 n n 
C3A C3B PC1 sing 518 n n 
C3A H3A1 PC1 sing 519 n n 
C3A H3A2 PC1 sing 520 n n 
C3B C3C PC1 sing 521 n n 
C3B H3B1 PC1 sing 522 n n 
C3B H3B2 PC1 sing 523 n n 
C3C C3D PC1 sing 524 n n 
C3C H3C1 PC1 sing 525 n n 
C3C H3C2 PC1 sing 526 n n 
C3D C3E PC1 sing 527 n n 
C3D H3D1 PC1 sing 528 n n 
C3D H3D2 PC1 sing 529 n n 
C3E C3F PC1 sing 530 n n 
C3E H3E1 PC1 sing 531 n n 
C3E H3E2 PC1 sing 532 n n 
C3F C3G PC1 sing 533 n n 
C3F H3F1 PC1 sing 534 n n 
C3F H3F2 PC1 sing 535 n n 
C3G C3H PC1 sing 536 n n 
C3G H3G1 PC1 sing 537 n n 
C3G H3G2 PC1 sing 538 n n 
C3H C3I PC1 sing 539 n n 
C3H H3H1 PC1 sing 540 n n 
C3H H3H2 PC1 sing 541 n n 
C3I H3I1 PC1 sing 542 n n 
C3I H3I2 PC1 sing 543 n n 
C3I H3I3 PC1 sing 544 n n 
#
_atom_sites.entry_id                     6GYO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CMP A 1 801 801 CMP CMP . 
F 3 PC1 A 1 809 913 PC1 PC1 . 
G 3 PC1 A 1 803 915 PC1 PC1 . 
H 3 PC1 A 1 804 919 PC1 PC1 . 
I 3 PC1 A 1 805 920 PC1 PC1 . 
J 4 PIE A 1 812 930 PIE PIE . 
K 5 3PE A 1 810 931 3PE 3PE . 
L 5 3PE A 1 811 932 3PE 3PE . 
M 3 PC1 A 1 806 914 PC1 PC1 . 
N 3 PC1 A 1 807 916 PC1 PC1 . 
O 3 PC1 A 1 808 918 PC1 PC1 . 
P 6 UNX A 1 802 901 UNX ZN . 
Q 6 UNX B 1 802 901 UNX ZN . 
R 3 PC1 B 1 808 916 PC1 PC1 . 
S 3 PC1 B 1 809 918 PC1 PC1 . 
T 2 CMP B 1 801 801 CMP CMP . 
U 3 PC1 B 1 804 913 PC1 PC1 . 
V 3 PC1 B 1 805 915 PC1 PC1 . 
W 3 PC1 B 1 806 919 PC1 PC1 . 
X 3 PC1 B 1 807 920 PC1 PC1 . 
Y 4 PIE B 1 812 930 PIE PIE . 
Z 5 3PE B 1 811 931 3PE 3PE . 
AA 5 3PE B 1 810 932 3PE 3PE . 
BA 3 PC1 B 1 803 914 PC1 PC1 . 
CA 6 UNX C 1 802 901 UNX ZN . 
DA 3 PC1 C 1 808 916 PC1 PC1 . 
EA 3 PC1 C 1 809 918 PC1 PC1 . 
FA 2 CMP C 1 801 801 CMP CMP . 
GA 3 PC1 C 1 804 913 PC1 PC1 . 
HA 3 PC1 C 1 805 915 PC1 PC1 . 
IA 3 PC1 C 1 806 919 PC1 PC1 . 
JA 3 PC1 C 1 807 920 PC1 PC1 . 
KA 4 PIE C 1 812 930 PIE PIE . 
LA 5 3PE C 1 811 931 3PE 3PE . 
MA 5 3PE C 1 810 932 3PE 3PE . 
NA 3 PC1 C 1 803 914 PC1 PC1 . 
OA 6 UNX D 1 802 901 UNX ZN . 
PA 3 PC1 D 1 804 914 PC1 PC1 . 
QA 3 PC1 D 1 809 916 PC1 PC1 . 
RA 3 PC1 D 1 803 918 PC1 PC1 . 
SA 2 CMP D 1 801 801 CMP CMP . 
TA 3 PC1 D 1 805 913 PC1 PC1 . 
UA 3 PC1 D 1 806 915 PC1 PC1 . 
VA 3 PC1 D 1 807 919 PC1 PC1 . 
WA 3 PC1 D 1 808 920 PC1 PC1 . 
XA 4 PIE D 1 812 930 PIE PIE . 
YA 5 3PE D 1 810 931 3PE 3PE . 
ZA 5 3PE D 1 811 932 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . GA 3 150.448 173.635 146.214 1 65.56 ? O12 PC1 804 C 1 
HETATM 2 P P PC1 . . . GA 3 148.971 173.647 146.174 1 65.56 ? P PC1 804 C 1 
HETATM 3 O O14 PC1 . . . GA 3 148.259 172.62 145.383 1 65.56 ? O14 PC1 804 C 1 
HETATM 4 O O13 PC1 . . . GA 3 148.479 175.103 145.754 1 65.56 ? O13 PC1 804 C 1 
HETATM 5 C C11 PC1 . . . GA 3 149.074 175.839 144.656 1 65.56 ? C11 PC1 804 C 1 
HETATM 6 O O11 PC1 . . . GA 3 148.441 173.659 147.676 1 65.56 ? O11 PC1 804 C 1 
HETATM 7 C C1 PC1 . . . GA 3 148.249 172.408 148.361 1 65.56 ? C1 PC1 804 C 1 
HETATM 8 C C2 PC1 . . . GA 3 147.653 172.685 149.714 1 65.56 ? C2 PC1 804 C 1 
HETATM 9 O O21 PC1 . . . GA 3 146.29 173.192 149.562 1 65.56 ? O21 PC1 804 C 1 
HETATM 10 C C21 PC1 . . . GA 3 145.286 172.306 149.633 1 65.56 ? C21 PC1 804 C 1 
HETATM 11 O O22 PC1 . . . GA 3 145.447 171.12 149.687 1 65.56 ? O22 PC1 804 C 1 
HETATM 12 C C22 PC1 . . . GA 3 143.953 172.987 149.643 1 65.56 ? C22 PC1 804 C 1 
HETATM 13 C C23 PC1 . . . GA 3 143.508 173.414 151.039 1 65.56 ? C23 PC1 804 C 1 
HETATM 14 C C24 PC1 . . . GA 3 143.629 172.318 152.093 1 65.56 ? C24 PC1 804 C 1 
HETATM 15 C C25 PC1 . . . GA 3 142.898 172.634 153.378 1 65.56 ? C25 PC1 804 C 1 
HETATM 16 C C26 PC1 . . . GA 3 143.169 171.676 154.523 1 65.56 ? C26 PC1 804 C 1 
HETATM 17 C C27 PC1 . . . GA 3 142.089 171.712 155.588 1 65.56 ? C27 PC1 804 C 1 
HETATM 18 C C28 PC1 . . . GA 3 142.481 171.127 156.929 1 65.56 ? C28 PC1 804 C 1 
HETATM 19 C C29 PC1 . . . GA 3 143.153 172.113 157.862 1 65.56 ? C29 PC1 804 C 1 
HETATM 20 C C2A PC1 . . . GA 3 143.356 171.582 159.267 1 65.56 ? C2A PC1 804 C 1 
HETATM 21 C C2B PC1 . . . GA 3 143.936 172.589 160.246 1 65.56 ? C2B PC1 804 C 1 
HETATM 22 C C2C PC1 . . . GA 3 143.032 173.769 160.539 1 65.56 ? C2C PC1 804 C 1 
HETATM 23 C C3 PC1 . . . GA 3 148.428 173.738 150.45 1 65.56 ? C3 PC1 804 C 1 
HETATM 24 O O31 PC1 . . . GA 3 147.657 174.08 151.621 1 65.56 ? O31 PC1 804 C 1 
HETATM 25 C C31 PC1 . . . GA 3 148.212 173.821 152.798 1 65.56 ? C31 PC1 804 C 1 
HETATM 26 O O32 PC1 . . . GA 3 149.316 173.386 152.926 1 65.56 ? O32 PC1 804 C 1 
HETATM 27 C C32 PC1 . . . GA 3 147.281 174.144 153.921 1 65.56 ? C32 PC1 804 C 1 
HETATM 28 C C33 PC1 . . . GA 3 147.78 173.662 155.271 1 65.56 ? C33 PC1 804 C 1 
HETATM 29 C C34 PC1 . . . GA 3 146.838 174.039 156.386 1 65.56 ? C34 PC1 804 C 1 
HETATM 30 C C35 PC1 . . . GA 3 147.205 173.478 157.734 1 65.56 ? C35 PC1 804 C 1 
HETATM 31 C C36 PC1 . . . GA 3 148.461 174.053 158.305 1 65.56 ? C36 PC1 804 C 1 
HETATM 32 C C37 PC1 . . . GA 3 148.809 173.516 159.67 1 65.56 ? C37 PC1 804 C 1 
HETATM 33 C C38 PC1 . . . GA 3 147.745 173.727 160.713 1 65.56 ? C38 PC1 804 C 1 
HETATM 34 C C39 PC1 . . . GA 3 148.314 174.034 162.075 1 65.56 ? C39 PC1 804 C 1 
HETATM 35 C C3A PC1 . . . GA 3 147.278 174.249 163.145 1 65.56 ? C3A PC1 804 C 1 
HETATM 36 C C3B PC1 . . . GA 3 146.576 172.978 163.58 1 65.56 ? C3B PC1 804 C 1 
HETATM 37 C C3C PC1 . . . GA 3 147.472 171.99 164.298 1 65.56 ? C3C PC1 804 C 1 
HETATM 38 C C3D PC1 . . . GA 3 148.003 172.499 165.611 1 65.56 ? C3D PC1 804 C 1 
HETATM 39 C C3E PC1 . . . GA 3 149.082 171.643 166.211 1 65.56 ? C3E PC1 804 C 1 
HETATM 40 C C3F PC1 . . . GA 3 149.717 172.264 167.419 1 65.56 ? C3F PC1 804 C 1 
HETATM 41 C C3G PC1 . . . GA 3 150.911 171.524 167.929 1 65.56 ? C3G PC1 804 C 1 
HETATM 42 C C3H PC1 . . . GA 3 151.617 172.228 169.051 1 65.56 ? C3H PC1 804 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           42 
#