data_6GYO
#
_model_server_result.job_id            ztfbJZJeHUUl1hCDUL4NPQ 
_model_server_result.datetime_utc      '2024-10-19 16:31:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gyo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"ZA","auth_seq_id":811}' 
#
_entry.id    6GYO 
#
_exptl.entry_id    6GYO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              748.065 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-Distearoyl-sn-glycerophosphoethanolamine 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GYO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 L N N 
? 5 Z N N 
? 5 AA N N 
? 5 LA N N 
? 5 MA N N 
? 5 YA N N 
? 5 ZA N N 
#
_chem_comp.formula           'C41 H82 N O8 P' 
_chem_comp.formula_weight    748.065 
_chem_comp.id                3PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-Distearoyl-sn-glycerophosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O11 3PE sing 1 n n 
P O12 3PE sing 2 n n 
P O13 3PE sing 3 n n 
P O14 3PE doub 4 n n 
N C12 3PE sing 5 n n 
N HN1 3PE sing 6 n n 
N HN2 3PE sing 7 n n 
O11 C1 3PE sing 8 n n 
O13 C11 3PE sing 9 n n 
C11 C12 3PE sing 10 n n 
C11 H111 3PE sing 11 n n 
C11 H112 3PE sing 12 n n 
C12 H121 3PE sing 13 n n 
C12 H122 3PE sing 14 n n 
C1 C2 3PE sing 15 n n 
C1 H11 3PE sing 16 n n 
C1 H12 3PE sing 17 n n 
C2 C3 3PE sing 18 n n 
C2 O21 3PE sing 19 n n 
C2 H2 3PE sing 20 n n 
C3 O31 3PE sing 21 n n 
C3 H31 3PE sing 22 n n 
C3 H32 3PE sing 23 n n 
O31 C31 3PE sing 24 n n 
O32 C31 3PE doub 25 n n 
C31 C32 3PE sing 26 n n 
C32 C33 3PE sing 27 n n 
C32 H321 3PE sing 28 n n 
C32 H322 3PE sing 29 n n 
C33 C34 3PE sing 30 n n 
C33 H331 3PE sing 31 n n 
C33 H332 3PE sing 32 n n 
C34 C35 3PE sing 33 n n 
C34 H341 3PE sing 34 n n 
C34 H342 3PE sing 35 n n 
C35 C36 3PE sing 36 n n 
C35 H351 3PE sing 37 n n 
C35 H352 3PE sing 38 n n 
C36 C37 3PE sing 39 n n 
C36 H361 3PE sing 40 n n 
C36 H362 3PE sing 41 n n 
C37 C38 3PE sing 42 n n 
C37 H371 3PE sing 43 n n 
C37 H372 3PE sing 44 n n 
C38 C39 3PE sing 45 n n 
C38 H381 3PE sing 46 n n 
C38 H382 3PE sing 47 n n 
C39 C3A 3PE sing 48 n n 
C39 H391 3PE sing 49 n n 
C39 H392 3PE sing 50 n n 
C3A C3B 3PE sing 51 n n 
C3A H3A1 3PE sing 52 n n 
C3A H3A2 3PE sing 53 n n 
C3B C3C 3PE sing 54 n n 
C3B H3B1 3PE sing 55 n n 
C3B H3B2 3PE sing 56 n n 
C3C C3D 3PE sing 57 n n 
C3C H3C1 3PE sing 58 n n 
C3C H3C2 3PE sing 59 n n 
C3D C3E 3PE sing 60 n n 
C3D H3D1 3PE sing 61 n n 
C3D H3D2 3PE sing 62 n n 
C3E C3F 3PE sing 63 n n 
C3E H3E1 3PE sing 64 n n 
C3E H3E2 3PE sing 65 n n 
C3F C3G 3PE sing 66 n n 
C3F H3F1 3PE sing 67 n n 
C3F H3F2 3PE sing 68 n n 
C3G C3H 3PE sing 69 n n 
C3G H3G1 3PE sing 70 n n 
C3G H3G2 3PE sing 71 n n 
C3H C3I 3PE sing 72 n n 
C3H H3H1 3PE sing 73 n n 
C3H H3H2 3PE sing 74 n n 
C3I H3I1 3PE sing 75 n n 
C3I H3I2 3PE sing 76 n n 
C3I H3I3 3PE sing 77 n n 
O21 C21 3PE sing 78 n n 
O22 C21 3PE doub 79 n n 
C21 C22 3PE sing 80 n n 
C22 C23 3PE sing 81 n n 
C22 H221 3PE sing 82 n n 
C22 H222 3PE sing 83 n n 
C23 C24 3PE sing 84 n n 
C23 H231 3PE sing 85 n n 
C23 H232 3PE sing 86 n n 
C24 C25 3PE sing 87 n n 
C24 H241 3PE sing 88 n n 
C24 H242 3PE sing 89 n n 
C25 C26 3PE sing 90 n n 
C25 H251 3PE sing 91 n n 
C25 H252 3PE sing 92 n n 
C26 C27 3PE sing 93 n n 
C26 H261 3PE sing 94 n n 
C26 H262 3PE sing 95 n n 
C27 C28 3PE sing 96 n n 
C27 H271 3PE sing 97 n n 
C27 H272 3PE sing 98 n n 
C28 C29 3PE sing 99 n n 
C28 H281 3PE sing 100 n n 
C28 H282 3PE sing 101 n n 
C29 C2A 3PE sing 102 n n 
C29 H291 3PE sing 103 n n 
C29 H292 3PE sing 104 n n 
C2A C2B 3PE sing 105 n n 
C2A H2A1 3PE sing 106 n n 
C2A H2A2 3PE sing 107 n n 
C2B C2C 3PE sing 108 n n 
C2B H2B1 3PE sing 109 n n 
C2B H2B2 3PE sing 110 n n 
C2C C2D 3PE sing 111 n n 
C2C H2C1 3PE sing 112 n n 
C2C H2C2 3PE sing 113 n n 
C2D C2E 3PE sing 114 n n 
C2D H2D1 3PE sing 115 n n 
C2D H2D2 3PE sing 116 n n 
C2E C2F 3PE sing 117 n n 
C2E H2E1 3PE sing 118 n n 
C2E H2E2 3PE sing 119 n n 
C2F C2G 3PE sing 120 n n 
C2F H2F1 3PE sing 121 n n 
C2F H2F2 3PE sing 122 n n 
C2G C2H 3PE sing 123 n n 
C2G H2G1 3PE sing 124 n n 
C2G H2G2 3PE sing 125 n n 
C2H C2I 3PE sing 126 n n 
C2H H2H1 3PE sing 127 n n 
C2H H2H2 3PE sing 128 n n 
C2I H2I1 3PE sing 129 n n 
C2I H2I2 3PE sing 130 n n 
C2I H2I3 3PE sing 131 n n 
O12 H1 3PE sing 132 n n 
#
_atom_sites.entry_id                     6GYO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CMP A 1 801 801 CMP CMP . 
F 3 PC1 A 1 809 913 PC1 PC1 . 
G 3 PC1 A 1 803 915 PC1 PC1 . 
H 3 PC1 A 1 804 919 PC1 PC1 . 
I 3 PC1 A 1 805 920 PC1 PC1 . 
J 4 PIE A 1 812 930 PIE PIE . 
K 5 3PE A 1 810 931 3PE 3PE . 
L 5 3PE A 1 811 932 3PE 3PE . 
M 3 PC1 A 1 806 914 PC1 PC1 . 
N 3 PC1 A 1 807 916 PC1 PC1 . 
O 3 PC1 A 1 808 918 PC1 PC1 . 
P 6 UNX A 1 802 901 UNX ZN . 
Q 6 UNX B 1 802 901 UNX ZN . 
R 3 PC1 B 1 808 916 PC1 PC1 . 
S 3 PC1 B 1 809 918 PC1 PC1 . 
T 2 CMP B 1 801 801 CMP CMP . 
U 3 PC1 B 1 804 913 PC1 PC1 . 
V 3 PC1 B 1 805 915 PC1 PC1 . 
W 3 PC1 B 1 806 919 PC1 PC1 . 
X 3 PC1 B 1 807 920 PC1 PC1 . 
Y 4 PIE B 1 812 930 PIE PIE . 
Z 5 3PE B 1 811 931 3PE 3PE . 
AA 5 3PE B 1 810 932 3PE 3PE . 
BA 3 PC1 B 1 803 914 PC1 PC1 . 
CA 6 UNX C 1 802 901 UNX ZN . 
DA 3 PC1 C 1 808 916 PC1 PC1 . 
EA 3 PC1 C 1 809 918 PC1 PC1 . 
FA 2 CMP C 1 801 801 CMP CMP . 
GA 3 PC1 C 1 804 913 PC1 PC1 . 
HA 3 PC1 C 1 805 915 PC1 PC1 . 
IA 3 PC1 C 1 806 919 PC1 PC1 . 
JA 3 PC1 C 1 807 920 PC1 PC1 . 
KA 4 PIE C 1 812 930 PIE PIE . 
LA 5 3PE C 1 811 931 3PE 3PE . 
MA 5 3PE C 1 810 932 3PE 3PE . 
NA 3 PC1 C 1 803 914 PC1 PC1 . 
OA 6 UNX D 1 802 901 UNX ZN . 
PA 3 PC1 D 1 804 914 PC1 PC1 . 
QA 3 PC1 D 1 809 916 PC1 PC1 . 
RA 3 PC1 D 1 803 918 PC1 PC1 . 
SA 2 CMP D 1 801 801 CMP CMP . 
TA 3 PC1 D 1 805 913 PC1 PC1 . 
UA 3 PC1 D 1 806 915 PC1 PC1 . 
VA 3 PC1 D 1 807 919 PC1 PC1 . 
WA 3 PC1 D 1 808 920 PC1 PC1 . 
XA 4 PIE D 1 812 930 PIE PIE . 
YA 5 3PE D 1 810 931 3PE 3PE . 
ZA 5 3PE D 1 811 932 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3PE . . . ZA 5 164.818 142.518 147.305 1 57.28 ? P 3PE 811 D 1 
HETATM 2 N N 3PE . . . ZA 5 165.011 139.99 143.258 1 57.28 ? N 3PE 811 D 1 
HETATM 3 O O11 3PE . . . ZA 5 164.329 142.247 148.796 1 57.28 ? O11 3PE 811 D 1 
HETATM 4 O O12 3PE . . . ZA 5 163.629 142.978 146.558 1 57.28 ? O12 3PE 811 D 1 
HETATM 5 O O13 3PE . . . ZA 5 165.277 141.145 146.635 1 57.28 ? O13 3PE 811 D 1 
HETATM 6 O O14 3PE . . . ZA 5 165.998 143.408 147.383 1 57.28 ? O14 3PE 811 D 1 
HETATM 7 C C11 3PE . . . ZA 5 165.795 141.154 145.281 1 57.28 ? C11 3PE 811 D 1 
HETATM 8 C C12 3PE . . . ZA 5 165.573 139.824 144.622 1 57.28 ? C12 3PE 811 D 1 
HETATM 9 C C1 3PE . . . ZA 5 163.829 143.361 149.563 1 57.28 ? C1 3PE 811 D 1 
HETATM 10 C C2 3PE . . . ZA 5 164.465 143.36 150.926 1 57.28 ? C2 3PE 811 D 1 
HETATM 11 C C3 3PE . . . ZA 5 165.959 143.183 150.865 1 57.28 ? C3 3PE 811 D 1 
HETATM 12 O O31 3PE . . . ZA 5 166.308 142.248 151.911 1 57.28 ? O31 3PE 811 D 1 
HETATM 13 O O32 3PE . . . ZA 5 167.331 140.913 150.437 1 57.28 ? O32 3PE 811 D 1 
HETATM 14 C C31 3PE . . . ZA 5 166.906 141.114 151.541 1 57.28 ? C31 3PE 811 D 1 
HETATM 15 C C32 3PE . . . ZA 5 166.955 140.132 152.671 1 57.28 ? C32 3PE 811 D 1 
HETATM 16 C C33 3PE . . . ZA 5 168.211 139.283 152.672 1 57.28 ? C33 3PE 811 D 1 
HETATM 17 C C34 3PE . . . ZA 5 168.532 138.712 154.036 1 57.28 ? C34 3PE 811 D 1 
HETATM 18 C C35 3PE . . . ZA 5 167.683 137.538 154.453 1 57.28 ? C35 3PE 811 D 1 
HETATM 19 C C36 3PE . . . ZA 5 168.108 136.964 155.787 1 57.28 ? C36 3PE 811 D 1 
HETATM 20 C C37 3PE . . . ZA 5 167.398 135.687 156.171 1 57.28 ? C37 3PE 811 D 1 
HETATM 21 C C38 3PE . . . ZA 5 167.954 135.037 157.421 1 57.28 ? C38 3PE 811 D 1 
HETATM 22 C C39 3PE . . . ZA 5 167.361 133.674 157.707 1 57.28 ? C39 3PE 811 D 1 
HETATM 23 C C3A 3PE . . . ZA 5 166.238 133.68 158.721 1 57.28 ? C3A 3PE 811 D 1 
HETATM 24 C C3B 3PE . . . ZA 5 166.681 134.078 160.113 1 57.28 ? C3B 3PE 811 D 1 
HETATM 25 C C3C 3PE . . . ZA 5 165.627 133.852 161.174 1 57.28 ? C3C 3PE 811 D 1 
HETATM 26 O O21 3PE . . . ZA 5 164.158 144.643 151.558 1 57.28 ? O21 3PE 811 D 1 
HETATM 27 O O22 3PE . . . ZA 5 164.275 143.732 153.602 1 57.28 ? O22 3PE 811 D 1 
HETATM 28 C C21 3PE . . . ZA 5 164.065 144.676 152.894 1 57.28 ? C21 3PE 811 D 1 
HETATM 29 C C22 3PE . . . ZA 5 163.657 146.032 153.379 1 57.28 ? C22 3PE 811 D 1 
HETATM 30 C C23 3PE . . . ZA 5 163.738 146.183 154.889 1 57.28 ? C23 3PE 811 D 1 
HETATM 31 C C24 3PE . . . ZA 5 163.206 147.518 155.356 1 57.28 ? C24 3PE 811 D 1 
HETATM 32 C C25 3PE . . . ZA 5 163.66 147.904 156.74 1 57.28 ? C25 3PE 811 D 1 
HETATM 33 C C26 3PE . . . ZA 5 163.273 149.308 157.128 1 57.28 ? C26 3PE 811 D 1 
HETATM 34 C C27 3PE . . . ZA 5 164.047 149.835 158.306 1 57.28 ? C27 3PE 811 D 1 
HETATM 35 C C28 3PE . . . ZA 5 163.764 151.281 158.63 1 57.28 ? C28 3PE 811 D 1 
HETATM 36 C C29 3PE . . . ZA 5 164.647 151.819 159.732 1 57.28 ? C29 3PE 811 D 1 
HETATM 37 C C2A 3PE . . . ZA 5 164.335 153.237 160.147 1 57.28 ? C2A 3PE 811 D 1 
HETATM 38 C C2B 3PE . . . ZA 5 165.141 153.696 161.345 1 57.28 ? C2B 3PE 811 D 1 
HETATM 39 C C2C 3PE . . . ZA 5 164.758 155.07 161.86 1 57.28 ? C2C 3PE 811 D 1 
HETATM 40 C C2D 3PE . . . ZA 5 165.569 155.523 163.062 1 57.28 ? C2D 3PE 811 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#