data_6GYO # _model_server_result.job_id 0MaWY-6zBWL9u_pU-ba_sg _model_server_result.datetime_utc '2024-10-19 16:44:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":812}' # _entry.id 6GYO # _exptl.entry_id 6GYO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 836.061 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GYO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 Y N N ? 4 KA N N ? 4 XA N N # _chem_comp.formula 'C43 H80 O13 P -1' _chem_comp.formula_weight 836.061 _chem_comp.id PIE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 PIE sing 568 n n P O12 PIE doub 569 n n P O13 PIE sing 570 n n P O14 PIE sing 571 n n O11 C1 PIE sing 572 n n O14 C5' PIE sing 573 n n C1 C2 PIE sing 574 n n C1 H11 PIE sing 575 n n C1 H12 PIE sing 576 n n C2 C3 PIE sing 577 n n C2 O21 PIE sing 578 n n C2 H21 PIE sing 579 n n C3 O31 PIE sing 580 n n C3 H31 PIE sing 581 n n C3 H32 PIE sing 582 n n O31 C31 PIE sing 583 n n O32 C31 PIE doub 584 n n C31 C32 PIE sing 585 n n C32 C33 PIE sing 586 n n C32 H321 PIE sing 587 n n C32 H322 PIE sing 588 n n C33 C34 PIE sing 589 n n C33 H331 PIE sing 590 n n C33 H332 PIE sing 591 n n C34 C35 PIE sing 592 n n C34 H341 PIE sing 593 n n C34 H342 PIE sing 594 n n C35 C36 PIE sing 595 n n C35 H351 PIE sing 596 n n C35 H352 PIE sing 597 n n C36 C37 PIE sing 598 n n C36 H361 PIE sing 599 n n C36 H362 PIE sing 600 n n C37 C38 PIE sing 601 n n C37 H371 PIE sing 602 n n C37 H372 PIE sing 603 n n C38 C39 PIE sing 604 n n C38 H381 PIE sing 605 n n C38 H382 PIE sing 606 n n C39 C40 PIE sing 607 n n C39 H391 PIE sing 608 n n C39 H392 PIE sing 609 n n C40 C41 PIE sing 610 n n C40 H401 PIE sing 611 n n C40 H402 PIE sing 612 n n C41 C42 PIE sing 613 n n C41 H411 PIE sing 614 n n C41 H412 PIE sing 615 n n C42 C43 PIE sing 616 n n C42 H421 PIE sing 617 n n C42 H422 PIE sing 618 n n O21 C21 PIE sing 619 n n O22 C21 PIE doub 620 n n C21 C22 PIE sing 621 n n C22 C23 PIE sing 622 n n C22 H221 PIE sing 623 n n C22 H222 PIE sing 624 n n C23 C24 PIE sing 625 n n C23 H231 PIE sing 626 n n C23 H232 PIE sing 627 n n C24 C25 PIE sing 628 n n C24 H241 PIE sing 629 n n C24 H242 PIE sing 630 n n C25 C26 PIE sing 631 n n C25 H251 PIE sing 632 n n C25 H252 PIE sing 633 n n C26 C27 PIE sing 634 n n C26 H261 PIE sing 635 n n C26 H262 PIE sing 636 n n C27 C28 PIE sing 637 n n C27 H271 PIE sing 638 n n C27 H272 PIE sing 639 n n C28 C29 PIE sing 640 n n C28 H281 PIE sing 641 n n C28 H282 PIE sing 642 n n C29 C47 PIE doub 643 e n C29 H291 PIE sing 644 n n C47 C48 PIE sing 645 n n C47 H471 PIE sing 646 n n C48 C49 PIE sing 647 n n C48 H481 PIE sing 648 n n C48 H482 PIE sing 649 n n C49 C50 PIE sing 650 n n C49 H491 PIE sing 651 n n C49 H492 PIE sing 652 n n C50 C51 PIE sing 653 n n C50 H501 PIE sing 654 n n C50 H502 PIE sing 655 n n C51 C52 PIE sing 656 n n C51 H511 PIE sing 657 n n C51 H512 PIE sing 658 n n C1' C2' PIE sing 659 n n C1' C6' PIE sing 660 n n C1' O1' PIE sing 661 n n C1' "H1'1" PIE sing 662 n n C2' C3' PIE sing 663 n n C2' O2' PIE sing 664 n n C2' "H2'1" PIE sing 665 n n C3' C4' PIE sing 666 n n C3' O3' PIE sing 667 n n C3' "H3'1" PIE sing 668 n n C4' C5' PIE sing 669 n n C4' O4' PIE sing 670 n n C4' "H4'1" PIE sing 671 n n C5' C6' PIE sing 672 n n C5' "H5'1" PIE sing 673 n n C6' O6' PIE sing 674 n n C6' "H6'1" PIE sing 675 n n O1' HO11 PIE sing 676 n n O2' HO21 PIE sing 677 n n O3' HO31 PIE sing 678 n n O4' HO41 PIE sing 679 n n O6' HO61 PIE sing 680 n n C52 C53 PIE sing 681 n n C52 H521 PIE sing 682 n n C52 H522 PIE sing 683 n n C53 C54 PIE sing 684 n n C53 H531 PIE sing 685 n n C53 H532 PIE sing 686 n n C54 C55 PIE sing 687 n n C54 H541 PIE sing 688 n n C54 H542 PIE sing 689 n n C55 H551 PIE sing 690 n n C55 H552 PIE sing 691 n n C55 H553 PIE sing 692 n n C43 C44 PIE sing 693 n n C43 H431 PIE sing 694 n n C43 H432 PIE sing 695 n n C44 C45 PIE sing 696 n n C44 H441 PIE sing 697 n n C44 H442 PIE sing 698 n n C45 C46 PIE sing 699 n n C45 H451 PIE sing 700 n n C45 H452 PIE sing 701 n n C46 H461 PIE sing 702 n n C46 H462 PIE sing 703 n n C46 H453 PIE sing 704 n n # _atom_sites.entry_id 6GYO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CMP A 1 801 801 CMP CMP . F 3 PC1 A 1 809 913 PC1 PC1 . G 3 PC1 A 1 803 915 PC1 PC1 . H 3 PC1 A 1 804 919 PC1 PC1 . I 3 PC1 A 1 805 920 PC1 PC1 . J 4 PIE A 1 812 930 PIE PIE . K 5 3PE A 1 810 931 3PE 3PE . L 5 3PE A 1 811 932 3PE 3PE . M 3 PC1 A 1 806 914 PC1 PC1 . N 3 PC1 A 1 807 916 PC1 PC1 . O 3 PC1 A 1 808 918 PC1 PC1 . P 6 UNX A 1 802 901 UNX ZN . Q 6 UNX B 1 802 901 UNX ZN . R 3 PC1 B 1 808 916 PC1 PC1 . S 3 PC1 B 1 809 918 PC1 PC1 . T 2 CMP B 1 801 801 CMP CMP . U 3 PC1 B 1 804 913 PC1 PC1 . V 3 PC1 B 1 805 915 PC1 PC1 . W 3 PC1 B 1 806 919 PC1 PC1 . X 3 PC1 B 1 807 920 PC1 PC1 . Y 4 PIE B 1 812 930 PIE PIE . Z 5 3PE B 1 811 931 3PE 3PE . AA 5 3PE B 1 810 932 3PE 3PE . BA 3 PC1 B 1 803 914 PC1 PC1 . CA 6 UNX C 1 802 901 UNX ZN . DA 3 PC1 C 1 808 916 PC1 PC1 . EA 3 PC1 C 1 809 918 PC1 PC1 . FA 2 CMP C 1 801 801 CMP CMP . GA 3 PC1 C 1 804 913 PC1 PC1 . HA 3 PC1 C 1 805 915 PC1 PC1 . IA 3 PC1 C 1 806 919 PC1 PC1 . JA 3 PC1 C 1 807 920 PC1 PC1 . KA 4 PIE C 1 812 930 PIE PIE . LA 5 3PE C 1 811 931 3PE 3PE . MA 5 3PE C 1 810 932 3PE 3PE . NA 3 PC1 C 1 803 914 PC1 PC1 . OA 6 UNX D 1 802 901 UNX ZN . PA 3 PC1 D 1 804 914 PC1 PC1 . QA 3 PC1 D 1 809 916 PC1 PC1 . RA 3 PC1 D 1 803 918 PC1 PC1 . SA 2 CMP D 1 801 801 CMP CMP . TA 3 PC1 D 1 805 913 PC1 PC1 . UA 3 PC1 D 1 806 915 PC1 PC1 . VA 3 PC1 D 1 807 919 PC1 PC1 . WA 3 PC1 D 1 808 920 PC1 PC1 . XA 4 PIE D 1 812 930 PIE PIE . YA 5 3PE D 1 810 931 3PE 3PE . ZA 5 3PE D 1 811 932 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PIE . . . KA 4 170.598 171.051 139.161 1 74.5 ? P PIE 812 C 1 HETATM 2 O O11 PIE . . . KA 4 171.807 171.124 140.201 1 74.5 ? O11 PIE 812 C 1 HETATM 3 O O12 PIE . . . KA 4 170.958 171.657 137.859 1 74.5 ? O12 PIE 812 C 1 HETATM 4 O O13 PIE . . . KA 4 170.111 169.657 139.175 1 74.5 ? O13 PIE 812 C 1 HETATM 5 O O14 PIE . . . KA 4 169.431 171.928 140.099 1 74.5 ? O14 PIE 812 C 1 HETATM 6 C C1 PIE . . . KA 4 171.455 171.131 141.598 1 74.5 ? C1 PIE 812 C 1 HETATM 7 C C2 PIE . . . KA 4 172.609 170.745 142.477 1 74.5 ? C2 PIE 812 C 1 HETATM 8 C C3 PIE . . . KA 4 172.678 171.645 143.675 1 74.5 ? C3 PIE 812 C 1 HETATM 9 O O31 PIE . . . KA 4 171.745 171.128 144.653 1 74.5 ? O31 PIE 812 C 1 HETATM 10 O O32 PIE . . . KA 4 170.428 172.908 144.375 1 74.5 ? O32 PIE 812 C 1 HETATM 11 C C31 PIE . . . KA 4 170.674 171.872 144.925 1 74.5 ? C31 PIE 812 C 1 HETATM 12 C C32 PIE . . . KA 4 169.829 171.25 145.995 1 74.5 ? C32 PIE 812 C 1 HETATM 13 C C33 PIE . . . KA 4 170.631 170.437 146.998 1 74.5 ? C33 PIE 812 C 1 HETATM 14 C C34 PIE . . . KA 4 169.787 169.943 148.155 1 74.5 ? C34 PIE 812 C 1 HETATM 15 O O21 PIE . . . KA 4 172.332 169.422 143.027 1 74.5 ? O21 PIE 812 C 1 HETATM 16 O O22 PIE . . . KA 4 174.517 168.946 143.211 1 74.5 ? O22 PIE 812 C 1 HETATM 17 C C21 PIE . . . KA 4 173.369 168.672 143.427 1 74.5 ? C21 PIE 812 C 1 HETATM 18 C C22 PIE . . . KA 4 172.901 167.468 144.187 1 74.5 ? C22 PIE 812 C 1 HETATM 19 C C23 PIE . . . KA 4 173.856 167.048 145.293 1 74.5 ? C23 PIE 812 C 1 HETATM 20 C C24 PIE . . . KA 4 173.269 165.991 146.213 1 74.5 ? C24 PIE 812 C 1 HETATM 21 C C25 PIE . . . KA 4 172.187 166.514 147.14 1 74.5 ? C25 PIE 812 C 1 HETATM 22 C C1' PIE . . . KA 4 169.532 175.649 139.411 1 74.5 ? C1' PIE 812 C 1 HETATM 23 C C2' PIE . . . KA 4 168.466 175.695 138.322 1 74.5 ? C2' PIE 812 C 1 HETATM 24 C C3' PIE . . . KA 4 167.373 174.667 138.57 1 74.5 ? C3' PIE 812 C 1 HETATM 25 C C4' PIE . . . KA 4 167.968 173.273 138.688 1 74.5 ? C4' PIE 812 C 1 HETATM 26 C C5' PIE . . . KA 4 168.955 173.267 139.838 1 74.5 ? C5' PIE 812 C 1 HETATM 27 C C6' PIE . . . KA 4 170.093 174.242 139.586 1 74.5 ? C6' PIE 812 C 1 HETATM 28 O O1' PIE . . . KA 4 170.582 176.549 139.084 1 74.5 ? O1' PIE 812 C 1 HETATM 29 O O2' PIE . . . KA 4 167.888 176.993 138.267 1 74.5 ? O2' PIE 812 C 1 HETATM 30 O O3' PIE . . . KA 4 166.426 174.711 137.511 1 74.5 ? O3' PIE 812 C 1 HETATM 31 O O4' PIE . . . KA 4 168.63 172.935 137.477 1 74.5 ? O4' PIE 812 C 1 HETATM 32 O O6' PIE . . . KA 4 171.017 174.221 140.666 1 74.5 ? O6' PIE 812 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 32 #