data_6GYT # _model_server_result.job_id C7JQYzSgsks8BMFhalevYQ _model_server_result.datetime_utc '2024-11-08 13:02:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1302}' # _entry.id 6GYT # _exptl.entry_id 6GYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GYT _cell.length_a 49.64 _cell.length_b 83.71 _cell.length_c 165.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLY 3 C GLY 11 1_555 C N ALY 4 C ALY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 C C ALY 4 C ALY 12 1_555 C N GLY 5 C GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale3 C C ALA 7 C ALA 15 1_555 C N ALY 8 C ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 C C ALY 8 C ALY 16 1_555 C N ALA 9 C ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? metalc ? metalc1 A SG CYS 117 A CYS 1163 1_555 D ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A SG CYS 118 A CYS 1164 1_555 D ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc3 A SG CYS 129 A CYS 1247 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A SG CYS 132 A CYS 1250 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc5 A ND1 HIS 137 A HIS 1255 1_555 D ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 A SG CYS 140 A CYS 1258 1_555 D ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc7 A SG CYS 154 A CYS 1272 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 A SG CYS 157 A CYS 1275 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 B SG CYS 119 B CYS 1163 1_555 F ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 B SG CYS 120 B CYS 1164 1_555 F ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc11 B SG CYS 131 B CYS 1247 1_555 G ZN ZN . B ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc12 B SG CYS 134 B CYS 1250 1_555 G ZN ZN . B ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc13 B ND1 HIS 139 B HIS 1255 1_555 F ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc14 B SG CYS 142 B CYS 1258 1_555 F ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc15 B SG CYS 156 B CYS 1272 1_555 G ZN ZN . B ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc16 B SG CYS 159 B CYS 1275 1_555 G ZN ZN . B ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GYT _atom_sites.fract_transf_matrix[1][1] 0.020145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1301 1 ZN ZN . E 4 ZN A 1 1302 2 ZN ZN . F 4 ZN B 1 1301 1 ZN ZN . G 4 ZN B 1 1302 2 ZN ZN . H 5 HOH A 1 1401 23 HOH HOH . H 5 HOH A 2 1402 36 HOH HOH . H 5 HOH A 3 1403 13 HOH HOH . H 5 HOH A 4 1404 31 HOH HOH . H 5 HOH A 5 1405 12 HOH HOH . H 5 HOH A 6 1406 16 HOH HOH . H 5 HOH A 7 1407 15 HOH HOH . H 5 HOH A 8 1408 8 HOH HOH . H 5 HOH A 9 1409 4 HOH HOH . H 5 HOH A 10 1410 19 HOH HOH . H 5 HOH A 11 1411 27 HOH HOH . H 5 HOH A 12 1412 9 HOH HOH . H 5 HOH A 13 1413 21 HOH HOH . H 5 HOH A 14 1414 20 HOH HOH . H 5 HOH A 15 1415 28 HOH HOH . H 5 HOH A 16 1416 24 HOH HOH . H 5 HOH A 17 1417 14 HOH HOH . H 5 HOH A 18 1418 32 HOH HOH . H 5 HOH A 19 1419 22 HOH HOH . I 5 HOH B 1 1401 11 HOH HOH . I 5 HOH B 2 1402 5 HOH HOH . I 5 HOH B 3 1403 35 HOH HOH . I 5 HOH B 4 1404 3 HOH HOH . I 5 HOH B 5 1405 7 HOH HOH . I 5 HOH B 6 1406 26 HOH HOH . I 5 HOH B 7 1407 10 HOH HOH . I 5 HOH B 8 1408 6 HOH HOH . I 5 HOH B 9 1409 18 HOH HOH . I 5 HOH B 10 1410 30 HOH HOH . I 5 HOH B 11 1411 1 HOH HOH . I 5 HOH B 12 1412 17 HOH HOH . I 5 HOH B 13 1413 33 HOH HOH . I 5 HOH B 14 1414 25 HOH HOH . I 5 HOH B 15 1415 2 HOH HOH . I 5 HOH B 16 1416 29 HOH HOH . I 5 HOH B 17 1417 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x -53.164 _atom_site.Cartn_y 104.167 _atom_site.Cartn_z 197.35 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #