data_6GZD # _model_server_result.job_id mwC0qV_dqrbNumR0Tcu9MQ _model_server_result.datetime_utc '2024-11-05 05:50:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6GZD # _exptl.entry_id 6GZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GZD _cell.length_a 113.383 _cell.length_b 113.383 _cell.length_c 80.878 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6GZD _atom_sites.fract_transf_matrix[1][1] 0.00882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 1001 1001 DMS DMS . C 2 DMS A 1 1002 1002 DMS DMS . D 3 PGE A 1 1003 1003 PGE PGE . E 3 PGE A 1 1004 1004 PGE PGE . F 3 PGE A 1 1005 1005 PGE PGE . G 4 EDO A 1 1006 1006 EDO EDO . H 4 EDO A 1 1007 1007 EDO EDO . I 4 EDO A 1 1008 1008 EDO EDO . J 4 EDO A 1 1009 1009 EDO EDO . K 4 EDO A 1 1010 1010 EDO EDO . L 5 PEG A 1 1011 1011 PEG PEG . M 5 PEG A 1 1012 1012 PEG PEG . N 5 PEG A 1 1013 1013 PEG PEG . O 5 PEG A 1 1014 1014 PEG PEG . P 5 PEG A 1 1015 1015 PEG PEG . Q 5 PEG A 1 1016 1016 PEG PEG . R 6 TCE A 1 1017 1017 TCE TCE . S 7 LCI A 1 1018 2001 LCI LCI . T 8 HOH A 1 1101 21 HOH HOH . T 8 HOH A 2 1102 87 HOH HOH . T 8 HOH A 3 1103 186 HOH HOH . T 8 HOH A 4 1104 136 HOH HOH . T 8 HOH A 5 1105 67 HOH HOH . T 8 HOH A 6 1106 16 HOH HOH . T 8 HOH A 7 1107 103 HOH HOH . T 8 HOH A 8 1108 24 HOH HOH . T 8 HOH A 9 1109 62 HOH HOH . T 8 HOH A 10 1110 95 HOH HOH . T 8 HOH A 11 1111 129 HOH HOH . T 8 HOH A 12 1112 149 HOH HOH . T 8 HOH A 13 1113 88 HOH HOH . T 8 HOH A 14 1114 27 HOH HOH . T 8 HOH A 15 1115 105 HOH HOH . T 8 HOH A 16 1116 42 HOH HOH . T 8 HOH A 17 1117 26 HOH HOH . T 8 HOH A 18 1118 2 HOH HOH . T 8 HOH A 19 1119 46 HOH HOH . T 8 HOH A 20 1120 108 HOH HOH . T 8 HOH A 21 1121 140 HOH HOH . T 8 HOH A 22 1122 22 HOH HOH . T 8 HOH A 23 1123 4 HOH HOH . T 8 HOH A 24 1124 69 HOH HOH . T 8 HOH A 25 1125 8 HOH HOH . T 8 HOH A 26 1126 56 HOH HOH . T 8 HOH A 27 1127 29 HOH HOH . T 8 HOH A 28 1128 84 HOH HOH . T 8 HOH A 29 1129 75 HOH HOH . T 8 HOH A 30 1130 137 HOH HOH . T 8 HOH A 31 1131 11 HOH HOH . T 8 HOH A 32 1132 43 HOH HOH . T 8 HOH A 33 1133 63 HOH HOH . T 8 HOH A 34 1134 14 HOH HOH . T 8 HOH A 35 1135 155 HOH HOH . T 8 HOH A 36 1136 47 HOH HOH . T 8 HOH A 37 1137 79 HOH HOH . T 8 HOH A 38 1138 38 HOH HOH . T 8 HOH A 39 1139 60 HOH HOH . T 8 HOH A 40 1140 13 HOH HOH . T 8 HOH A 41 1141 41 HOH HOH . T 8 HOH A 42 1142 167 HOH HOH . T 8 HOH A 43 1143 187 HOH HOH . T 8 HOH A 44 1144 121 HOH HOH . T 8 HOH A 45 1145 72 HOH HOH . T 8 HOH A 46 1146 98 HOH HOH . T 8 HOH A 47 1147 20 HOH HOH . T 8 HOH A 48 1148 12 HOH HOH . T 8 HOH A 49 1149 171 HOH HOH . T 8 HOH A 50 1150 153 HOH HOH . T 8 HOH A 51 1151 65 HOH HOH . T 8 HOH A 52 1152 3 HOH HOH . T 8 HOH A 53 1153 23 HOH HOH . T 8 HOH A 54 1154 52 HOH HOH . T 8 HOH A 55 1155 37 HOH HOH . T 8 HOH A 56 1156 184 HOH HOH . T 8 HOH A 57 1157 55 HOH HOH . T 8 HOH A 58 1158 17 HOH HOH . T 8 HOH A 59 1159 35 HOH HOH . T 8 HOH A 60 1160 189 HOH HOH . T 8 HOH A 61 1161 109 HOH HOH . T 8 HOH A 62 1162 66 HOH HOH . T 8 HOH A 63 1163 120 HOH HOH . T 8 HOH A 64 1164 18 HOH HOH . T 8 HOH A 65 1165 81 HOH HOH . T 8 HOH A 66 1166 68 HOH HOH . T 8 HOH A 67 1167 117 HOH HOH . T 8 HOH A 68 1168 9 HOH HOH . T 8 HOH A 69 1169 92 HOH HOH . T 8 HOH A 70 1170 128 HOH HOH . T 8 HOH A 71 1171 127 HOH HOH . T 8 HOH A 72 1172 5 HOH HOH . T 8 HOH A 73 1173 1 HOH HOH . T 8 HOH A 74 1174 70 HOH HOH . T 8 HOH A 75 1175 64 HOH HOH . T 8 HOH A 76 1176 71 HOH HOH . T 8 HOH A 77 1177 74 HOH HOH . T 8 HOH A 78 1178 85 HOH HOH . T 8 HOH A 79 1179 34 HOH HOH . T 8 HOH A 80 1180 107 HOH HOH . T 8 HOH A 81 1181 28 HOH HOH . T 8 HOH A 82 1182 10 HOH HOH . T 8 HOH A 83 1183 110 HOH HOH . T 8 HOH A 84 1184 19 HOH HOH . T 8 HOH A 85 1185 39 HOH HOH . T 8 HOH A 86 1186 144 HOH HOH . T 8 HOH A 87 1187 135 HOH HOH . T 8 HOH A 88 1188 115 HOH HOH . T 8 HOH A 89 1189 53 HOH HOH . T 8 HOH A 90 1190 30 HOH HOH . T 8 HOH A 91 1191 33 HOH HOH . T 8 HOH A 92 1192 93 HOH HOH . T 8 HOH A 93 1193 40 HOH HOH . T 8 HOH A 94 1194 99 HOH HOH . T 8 HOH A 95 1195 77 HOH HOH . T 8 HOH A 96 1196 7 HOH HOH . T 8 HOH A 97 1197 44 HOH HOH . T 8 HOH A 98 1198 111 HOH HOH . T 8 HOH A 99 1199 83 HOH HOH . T 8 HOH A 100 1200 59 HOH HOH . T 8 HOH A 101 1201 150 HOH HOH . T 8 HOH A 102 1202 89 HOH HOH . T 8 HOH A 103 1203 73 HOH HOH . T 8 HOH A 104 1204 185 HOH HOH . T 8 HOH A 105 1205 31 HOH HOH . T 8 HOH A 106 1206 25 HOH HOH . T 8 HOH A 107 1207 6 HOH HOH . T 8 HOH A 108 1208 190 HOH HOH . T 8 HOH A 109 1209 51 HOH HOH . T 8 HOH A 110 1210 173 HOH HOH . T 8 HOH A 111 1211 15 HOH HOH . T 8 HOH A 112 1212 130 HOH HOH . T 8 HOH A 113 1213 166 HOH HOH . T 8 HOH A 114 1214 175 HOH HOH . T 8 HOH A 115 1215 170 HOH HOH . T 8 HOH A 116 1216 86 HOH HOH . T 8 HOH A 117 1217 32 HOH HOH . T 8 HOH A 118 1218 131 HOH HOH . T 8 HOH A 119 1219 57 HOH HOH . T 8 HOH A 120 1220 164 HOH HOH . T 8 HOH A 121 1221 138 HOH HOH . T 8 HOH A 122 1222 161 HOH HOH . T 8 HOH A 123 1223 156 HOH HOH . T 8 HOH A 124 1224 104 HOH HOH . T 8 HOH A 125 1225 133 HOH HOH . T 8 HOH A 126 1226 49 HOH HOH . T 8 HOH A 127 1227 126 HOH HOH . T 8 HOH A 128 1228 36 HOH HOH . T 8 HOH A 129 1229 152 HOH HOH . T 8 HOH A 130 1230 180 HOH HOH . T 8 HOH A 131 1231 145 HOH HOH . T 8 HOH A 132 1232 50 HOH HOH . T 8 HOH A 133 1233 113 HOH HOH . T 8 HOH A 134 1234 106 HOH HOH . T 8 HOH A 135 1235 119 HOH HOH . T 8 HOH A 136 1236 160 HOH HOH . T 8 HOH A 137 1237 178 HOH HOH . T 8 HOH A 138 1238 82 HOH HOH . T 8 HOH A 139 1239 139 HOH HOH . T 8 HOH A 140 1240 102 HOH HOH . T 8 HOH A 141 1241 78 HOH HOH . T 8 HOH A 142 1242 162 HOH HOH . T 8 HOH A 143 1243 58 HOH HOH . T 8 HOH A 144 1244 169 HOH HOH . T 8 HOH A 145 1245 134 HOH HOH . T 8 HOH A 146 1246 124 HOH HOH . T 8 HOH A 147 1247 168 HOH HOH . T 8 HOH A 148 1248 54 HOH HOH . T 8 HOH A 149 1249 177 HOH HOH . T 8 HOH A 150 1250 80 HOH HOH . T 8 HOH A 151 1251 112 HOH HOH . T 8 HOH A 152 1252 61 HOH HOH . T 8 HOH A 153 1253 141 HOH HOH . T 8 HOH A 154 1254 176 HOH HOH . T 8 HOH A 155 1255 174 HOH HOH . T 8 HOH A 156 1256 123 HOH HOH . T 8 HOH A 157 1257 179 HOH HOH . T 8 HOH A 158 1258 76 HOH HOH . T 8 HOH A 159 1259 172 HOH HOH . T 8 HOH A 160 1260 147 HOH HOH . T 8 HOH A 161 1261 90 HOH HOH . T 8 HOH A 162 1262 181 HOH HOH . T 8 HOH A 163 1263 97 HOH HOH . T 8 HOH A 164 1264 132 HOH HOH . T 8 HOH A 165 1265 159 HOH HOH . T 8 HOH A 166 1266 183 HOH HOH . T 8 HOH A 167 1267 165 HOH HOH . T 8 HOH A 168 1268 114 HOH HOH . T 8 HOH A 169 1269 91 HOH HOH . T 8 HOH A 170 1270 143 HOH HOH . T 8 HOH A 171 1271 118 HOH HOH . T 8 HOH A 172 1272 157 HOH HOH . T 8 HOH A 173 1273 188 HOH HOH . T 8 HOH A 174 1274 122 HOH HOH . T 8 HOH A 175 1275 125 HOH HOH . T 8 HOH A 176 1276 154 HOH HOH . T 8 HOH A 177 1277 48 HOH HOH . T 8 HOH A 178 1278 45 HOH HOH . T 8 HOH A 179 1279 142 HOH HOH . T 8 HOH A 180 1280 148 HOH HOH . T 8 HOH A 181 1281 94 HOH HOH . T 8 HOH A 182 1282 100 HOH HOH . T 8 HOH A 183 1283 116 HOH HOH . T 8 HOH A 184 1284 163 HOH HOH . T 8 HOH A 185 1285 146 HOH HOH . T 8 HOH A 186 1286 101 HOH HOH . T 8 HOH A 187 1287 96 HOH HOH . T 8 HOH A 188 1288 151 HOH HOH . T 8 HOH A 189 1289 158 HOH HOH . T 8 HOH A 190 1290 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 5.14 -26.876 5.725 0.6 68.13 ? S DMS 1002 A 1 HETATM 2 O O DMS . . . C 2 5.723 -27.127 4.404 0.6 62.23 ? O DMS 1002 A 1 HETATM 3 C C1 DMS . . . C 2 3.868 -27.994 5.94 0.6 67.67 ? C1 DMS 1002 A 1 HETATM 4 C C2 DMS . . . C 2 6.29 -27.342 6.899 0.6 68.82 ? C2 DMS 1002 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 4 #