data_6GZD
#
_model_server_result.job_id            yfMqndtCiOo2eneqzzkhIQ 
_model_server_result.datetime_utc      '2024-11-05 05:30:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gzd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1007}' 
#
_entry.id    6GZD 
#
_exptl.entry_id    6GZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GZD 
_cell.length_a            113.383 
_cell.length_b            113.383 
_cell.length_c            80.878 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     6GZD 
_atom_sites.fract_transf_matrix[1][1]    0.00882 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00882 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 1001 1001 DMS DMS . 
C 2 DMS A 1 1002 1002 DMS DMS . 
D 3 PGE A 1 1003 1003 PGE PGE . 
E 3 PGE A 1 1004 1004 PGE PGE . 
F 3 PGE A 1 1005 1005 PGE PGE . 
G 4 EDO A 1 1006 1006 EDO EDO . 
H 4 EDO A 1 1007 1007 EDO EDO . 
I 4 EDO A 1 1008 1008 EDO EDO . 
J 4 EDO A 1 1009 1009 EDO EDO . 
K 4 EDO A 1 1010 1010 EDO EDO . 
L 5 PEG A 1 1011 1011 PEG PEG . 
M 5 PEG A 1 1012 1012 PEG PEG . 
N 5 PEG A 1 1013 1013 PEG PEG . 
O 5 PEG A 1 1014 1014 PEG PEG . 
P 5 PEG A 1 1015 1015 PEG PEG . 
Q 5 PEG A 1 1016 1016 PEG PEG . 
R 6 TCE A 1 1017 1017 TCE TCE . 
S 7 LCI A 1 1018 2001 LCI LCI . 
T 8 HOH A 1 1101 21 HOH HOH . 
T 8 HOH A 2 1102 87 HOH HOH . 
T 8 HOH A 3 1103 186 HOH HOH . 
T 8 HOH A 4 1104 136 HOH HOH . 
T 8 HOH A 5 1105 67 HOH HOH . 
T 8 HOH A 6 1106 16 HOH HOH . 
T 8 HOH A 7 1107 103 HOH HOH . 
T 8 HOH A 8 1108 24 HOH HOH . 
T 8 HOH A 9 1109 62 HOH HOH . 
T 8 HOH A 10 1110 95 HOH HOH . 
T 8 HOH A 11 1111 129 HOH HOH . 
T 8 HOH A 12 1112 149 HOH HOH . 
T 8 HOH A 13 1113 88 HOH HOH . 
T 8 HOH A 14 1114 27 HOH HOH . 
T 8 HOH A 15 1115 105 HOH HOH . 
T 8 HOH A 16 1116 42 HOH HOH . 
T 8 HOH A 17 1117 26 HOH HOH . 
T 8 HOH A 18 1118 2 HOH HOH . 
T 8 HOH A 19 1119 46 HOH HOH . 
T 8 HOH A 20 1120 108 HOH HOH . 
T 8 HOH A 21 1121 140 HOH HOH . 
T 8 HOH A 22 1122 22 HOH HOH . 
T 8 HOH A 23 1123 4 HOH HOH . 
T 8 HOH A 24 1124 69 HOH HOH . 
T 8 HOH A 25 1125 8 HOH HOH . 
T 8 HOH A 26 1126 56 HOH HOH . 
T 8 HOH A 27 1127 29 HOH HOH . 
T 8 HOH A 28 1128 84 HOH HOH . 
T 8 HOH A 29 1129 75 HOH HOH . 
T 8 HOH A 30 1130 137 HOH HOH . 
T 8 HOH A 31 1131 11 HOH HOH . 
T 8 HOH A 32 1132 43 HOH HOH . 
T 8 HOH A 33 1133 63 HOH HOH . 
T 8 HOH A 34 1134 14 HOH HOH . 
T 8 HOH A 35 1135 155 HOH HOH . 
T 8 HOH A 36 1136 47 HOH HOH . 
T 8 HOH A 37 1137 79 HOH HOH . 
T 8 HOH A 38 1138 38 HOH HOH . 
T 8 HOH A 39 1139 60 HOH HOH . 
T 8 HOH A 40 1140 13 HOH HOH . 
T 8 HOH A 41 1141 41 HOH HOH . 
T 8 HOH A 42 1142 167 HOH HOH . 
T 8 HOH A 43 1143 187 HOH HOH . 
T 8 HOH A 44 1144 121 HOH HOH . 
T 8 HOH A 45 1145 72 HOH HOH . 
T 8 HOH A 46 1146 98 HOH HOH . 
T 8 HOH A 47 1147 20 HOH HOH . 
T 8 HOH A 48 1148 12 HOH HOH . 
T 8 HOH A 49 1149 171 HOH HOH . 
T 8 HOH A 50 1150 153 HOH HOH . 
T 8 HOH A 51 1151 65 HOH HOH . 
T 8 HOH A 52 1152 3 HOH HOH . 
T 8 HOH A 53 1153 23 HOH HOH . 
T 8 HOH A 54 1154 52 HOH HOH . 
T 8 HOH A 55 1155 37 HOH HOH . 
T 8 HOH A 56 1156 184 HOH HOH . 
T 8 HOH A 57 1157 55 HOH HOH . 
T 8 HOH A 58 1158 17 HOH HOH . 
T 8 HOH A 59 1159 35 HOH HOH . 
T 8 HOH A 60 1160 189 HOH HOH . 
T 8 HOH A 61 1161 109 HOH HOH . 
T 8 HOH A 62 1162 66 HOH HOH . 
T 8 HOH A 63 1163 120 HOH HOH . 
T 8 HOH A 64 1164 18 HOH HOH . 
T 8 HOH A 65 1165 81 HOH HOH . 
T 8 HOH A 66 1166 68 HOH HOH . 
T 8 HOH A 67 1167 117 HOH HOH . 
T 8 HOH A 68 1168 9 HOH HOH . 
T 8 HOH A 69 1169 92 HOH HOH . 
T 8 HOH A 70 1170 128 HOH HOH . 
T 8 HOH A 71 1171 127 HOH HOH . 
T 8 HOH A 72 1172 5 HOH HOH . 
T 8 HOH A 73 1173 1 HOH HOH . 
T 8 HOH A 74 1174 70 HOH HOH . 
T 8 HOH A 75 1175 64 HOH HOH . 
T 8 HOH A 76 1176 71 HOH HOH . 
T 8 HOH A 77 1177 74 HOH HOH . 
T 8 HOH A 78 1178 85 HOH HOH . 
T 8 HOH A 79 1179 34 HOH HOH . 
T 8 HOH A 80 1180 107 HOH HOH . 
T 8 HOH A 81 1181 28 HOH HOH . 
T 8 HOH A 82 1182 10 HOH HOH . 
T 8 HOH A 83 1183 110 HOH HOH . 
T 8 HOH A 84 1184 19 HOH HOH . 
T 8 HOH A 85 1185 39 HOH HOH . 
T 8 HOH A 86 1186 144 HOH HOH . 
T 8 HOH A 87 1187 135 HOH HOH . 
T 8 HOH A 88 1188 115 HOH HOH . 
T 8 HOH A 89 1189 53 HOH HOH . 
T 8 HOH A 90 1190 30 HOH HOH . 
T 8 HOH A 91 1191 33 HOH HOH . 
T 8 HOH A 92 1192 93 HOH HOH . 
T 8 HOH A 93 1193 40 HOH HOH . 
T 8 HOH A 94 1194 99 HOH HOH . 
T 8 HOH A 95 1195 77 HOH HOH . 
T 8 HOH A 96 1196 7 HOH HOH . 
T 8 HOH A 97 1197 44 HOH HOH . 
T 8 HOH A 98 1198 111 HOH HOH . 
T 8 HOH A 99 1199 83 HOH HOH . 
T 8 HOH A 100 1200 59 HOH HOH . 
T 8 HOH A 101 1201 150 HOH HOH . 
T 8 HOH A 102 1202 89 HOH HOH . 
T 8 HOH A 103 1203 73 HOH HOH . 
T 8 HOH A 104 1204 185 HOH HOH . 
T 8 HOH A 105 1205 31 HOH HOH . 
T 8 HOH A 106 1206 25 HOH HOH . 
T 8 HOH A 107 1207 6 HOH HOH . 
T 8 HOH A 108 1208 190 HOH HOH . 
T 8 HOH A 109 1209 51 HOH HOH . 
T 8 HOH A 110 1210 173 HOH HOH . 
T 8 HOH A 111 1211 15 HOH HOH . 
T 8 HOH A 112 1212 130 HOH HOH . 
T 8 HOH A 113 1213 166 HOH HOH . 
T 8 HOH A 114 1214 175 HOH HOH . 
T 8 HOH A 115 1215 170 HOH HOH . 
T 8 HOH A 116 1216 86 HOH HOH . 
T 8 HOH A 117 1217 32 HOH HOH . 
T 8 HOH A 118 1218 131 HOH HOH . 
T 8 HOH A 119 1219 57 HOH HOH . 
T 8 HOH A 120 1220 164 HOH HOH . 
T 8 HOH A 121 1221 138 HOH HOH . 
T 8 HOH A 122 1222 161 HOH HOH . 
T 8 HOH A 123 1223 156 HOH HOH . 
T 8 HOH A 124 1224 104 HOH HOH . 
T 8 HOH A 125 1225 133 HOH HOH . 
T 8 HOH A 126 1226 49 HOH HOH . 
T 8 HOH A 127 1227 126 HOH HOH . 
T 8 HOH A 128 1228 36 HOH HOH . 
T 8 HOH A 129 1229 152 HOH HOH . 
T 8 HOH A 130 1230 180 HOH HOH . 
T 8 HOH A 131 1231 145 HOH HOH . 
T 8 HOH A 132 1232 50 HOH HOH . 
T 8 HOH A 133 1233 113 HOH HOH . 
T 8 HOH A 134 1234 106 HOH HOH . 
T 8 HOH A 135 1235 119 HOH HOH . 
T 8 HOH A 136 1236 160 HOH HOH . 
T 8 HOH A 137 1237 178 HOH HOH . 
T 8 HOH A 138 1238 82 HOH HOH . 
T 8 HOH A 139 1239 139 HOH HOH . 
T 8 HOH A 140 1240 102 HOH HOH . 
T 8 HOH A 141 1241 78 HOH HOH . 
T 8 HOH A 142 1242 162 HOH HOH . 
T 8 HOH A 143 1243 58 HOH HOH . 
T 8 HOH A 144 1244 169 HOH HOH . 
T 8 HOH A 145 1245 134 HOH HOH . 
T 8 HOH A 146 1246 124 HOH HOH . 
T 8 HOH A 147 1247 168 HOH HOH . 
T 8 HOH A 148 1248 54 HOH HOH . 
T 8 HOH A 149 1249 177 HOH HOH . 
T 8 HOH A 150 1250 80 HOH HOH . 
T 8 HOH A 151 1251 112 HOH HOH . 
T 8 HOH A 152 1252 61 HOH HOH . 
T 8 HOH A 153 1253 141 HOH HOH . 
T 8 HOH A 154 1254 176 HOH HOH . 
T 8 HOH A 155 1255 174 HOH HOH . 
T 8 HOH A 156 1256 123 HOH HOH . 
T 8 HOH A 157 1257 179 HOH HOH . 
T 8 HOH A 158 1258 76 HOH HOH . 
T 8 HOH A 159 1259 172 HOH HOH . 
T 8 HOH A 160 1260 147 HOH HOH . 
T 8 HOH A 161 1261 90 HOH HOH . 
T 8 HOH A 162 1262 181 HOH HOH . 
T 8 HOH A 163 1263 97 HOH HOH . 
T 8 HOH A 164 1264 132 HOH HOH . 
T 8 HOH A 165 1265 159 HOH HOH . 
T 8 HOH A 166 1266 183 HOH HOH . 
T 8 HOH A 167 1267 165 HOH HOH . 
T 8 HOH A 168 1268 114 HOH HOH . 
T 8 HOH A 169 1269 91 HOH HOH . 
T 8 HOH A 170 1270 143 HOH HOH . 
T 8 HOH A 171 1271 118 HOH HOH . 
T 8 HOH A 172 1272 157 HOH HOH . 
T 8 HOH A 173 1273 188 HOH HOH . 
T 8 HOH A 174 1274 122 HOH HOH . 
T 8 HOH A 175 1275 125 HOH HOH . 
T 8 HOH A 176 1276 154 HOH HOH . 
T 8 HOH A 177 1277 48 HOH HOH . 
T 8 HOH A 178 1278 45 HOH HOH . 
T 8 HOH A 179 1279 142 HOH HOH . 
T 8 HOH A 180 1280 148 HOH HOH . 
T 8 HOH A 181 1281 94 HOH HOH . 
T 8 HOH A 182 1282 100 HOH HOH . 
T 8 HOH A 183 1283 116 HOH HOH . 
T 8 HOH A 184 1284 163 HOH HOH . 
T 8 HOH A 185 1285 146 HOH HOH . 
T 8 HOH A 186 1286 101 HOH HOH . 
T 8 HOH A 187 1287 96 HOH HOH . 
T 8 HOH A 188 1288 151 HOH HOH . 
T 8 HOH A 189 1289 158 HOH HOH . 
T 8 HOH A 190 1290 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 15.039 -20.765 -18.672 1 55.68 ? C1 EDO 1007 A 1 
HETATM 2 O O1 EDO . . . H 4 16.365 -21.231 -18.403 1 51.28 ? O1 EDO 1007 A 1 
HETATM 3 C C2 EDO . . . H 4 14.355 -21.695 -19.657 1 53.54 ? C2 EDO 1007 A 1 
HETATM 4 O O2 EDO . . . H 4 15.204 -22 -20.776 1 47.74 ? O2 EDO 1007 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#