data_6GZH
#
_model_server_result.job_id            cMdtVH5FSCn64MFukkQYUA 
_model_server_result.datetime_utc      '2024-12-23 11:07:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gzh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    6GZH 
#
_exptl.entry_id    6GZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GZH 
_cell.length_a            171.599 
_cell.length_b            171.599 
_cell.length_c            97.79 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 185 A TYR 185 1_555 A N TPO 186 A TPO 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C TPO 186 A TPO 186 1_555 A N ASN 187 A ASN 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6GZH 
_atom_sites.fract_transf_matrix[1][1]    0.005828 
_atom_sites.fract_transf_matrix[1][2]    0.003365 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LCI A 1 2001 2001 LCI LCI . 
D 4 GOL B 1 1001 1001 GOL GOL . 
E 4 GOL B 1 1002 1002 GOL GOL . 
F 5 HOH A 1 2101 146 HOH HOH . 
F 5 HOH A 2 2102 159 HOH HOH . 
F 5 HOH A 3 2103 147 HOH HOH . 
F 5 HOH A 4 2104 114 HOH HOH . 
F 5 HOH A 5 2105 31 HOH HOH . 
F 5 HOH A 6 2106 163 HOH HOH . 
F 5 HOH A 7 2107 144 HOH HOH . 
F 5 HOH A 8 2108 74 HOH HOH . 
F 5 HOH A 9 2109 59 HOH HOH . 
F 5 HOH A 10 2110 72 HOH HOH . 
F 5 HOH A 11 2111 92 HOH HOH . 
F 5 HOH A 12 2112 43 HOH HOH . 
F 5 HOH A 13 2113 45 HOH HOH . 
F 5 HOH A 14 2114 123 HOH HOH . 
F 5 HOH A 15 2115 107 HOH HOH . 
F 5 HOH A 16 2116 32 HOH HOH . 
F 5 HOH A 17 2117 112 HOH HOH . 
F 5 HOH A 18 2118 46 HOH HOH . 
F 5 HOH A 19 2119 75 HOH HOH . 
F 5 HOH A 20 2120 143 HOH HOH . 
F 5 HOH A 21 2121 62 HOH HOH . 
F 5 HOH A 22 2122 145 HOH HOH . 
F 5 HOH A 23 2123 5 HOH HOH . 
F 5 HOH A 24 2124 67 HOH HOH . 
F 5 HOH A 25 2125 60 HOH HOH . 
F 5 HOH A 26 2126 13 HOH HOH . 
F 5 HOH A 27 2127 15 HOH HOH . 
F 5 HOH A 28 2128 155 HOH HOH . 
F 5 HOH A 29 2129 38 HOH HOH . 
F 5 HOH A 30 2130 47 HOH HOH . 
F 5 HOH A 31 2131 137 HOH HOH . 
F 5 HOH A 32 2132 28 HOH HOH . 
F 5 HOH A 33 2133 87 HOH HOH . 
F 5 HOH A 34 2134 12 HOH HOH . 
F 5 HOH A 35 2135 22 HOH HOH . 
F 5 HOH A 36 2136 10 HOH HOH . 
F 5 HOH A 37 2137 138 HOH HOH . 
F 5 HOH A 38 2138 88 HOH HOH . 
F 5 HOH A 39 2139 156 HOH HOH . 
F 5 HOH A 40 2140 118 HOH HOH . 
F 5 HOH A 41 2141 154 HOH HOH . 
F 5 HOH A 42 2142 85 HOH HOH . 
F 5 HOH A 43 2143 151 HOH HOH . 
F 5 HOH A 44 2144 37 HOH HOH . 
F 5 HOH A 45 2145 76 HOH HOH . 
F 5 HOH A 46 2146 2 HOH HOH . 
F 5 HOH A 47 2147 14 HOH HOH . 
F 5 HOH A 48 2148 106 HOH HOH . 
F 5 HOH A 49 2149 139 HOH HOH . 
F 5 HOH A 50 2150 136 HOH HOH . 
F 5 HOH A 51 2151 27 HOH HOH . 
F 5 HOH A 52 2152 77 HOH HOH . 
F 5 HOH A 53 2153 104 HOH HOH . 
F 5 HOH A 54 2154 30 HOH HOH . 
F 5 HOH A 55 2155 9 HOH HOH . 
F 5 HOH A 56 2156 44 HOH HOH . 
F 5 HOH A 57 2157 97 HOH HOH . 
F 5 HOH A 58 2158 50 HOH HOH . 
F 5 HOH A 59 2159 7 HOH HOH . 
F 5 HOH A 60 2160 53 HOH HOH . 
F 5 HOH A 61 2161 61 HOH HOH . 
F 5 HOH A 62 2162 153 HOH HOH . 
F 5 HOH A 63 2163 78 HOH HOH . 
F 5 HOH A 64 2164 142 HOH HOH . 
F 5 HOH A 65 2165 20 HOH HOH . 
F 5 HOH A 66 2166 49 HOH HOH . 
F 5 HOH A 67 2167 29 HOH HOH . 
F 5 HOH A 68 2168 94 HOH HOH . 
F 5 HOH A 69 2169 141 HOH HOH . 
F 5 HOH A 70 2170 52 HOH HOH . 
F 5 HOH A 71 2171 162 HOH HOH . 
F 5 HOH A 72 2172 86 HOH HOH . 
F 5 HOH A 73 2173 26 HOH HOH . 
F 5 HOH A 74 2174 79 HOH HOH . 
F 5 HOH A 75 2175 35 HOH HOH . 
F 5 HOH A 76 2176 148 HOH HOH . 
F 5 HOH A 77 2177 111 HOH HOH . 
F 5 HOH A 78 2178 113 HOH HOH . 
F 5 HOH A 79 2179 157 HOH HOH . 
F 5 HOH A 80 2180 110 HOH HOH . 
F 5 HOH A 81 2181 98 HOH HOH . 
F 5 HOH A 82 2182 70 HOH HOH . 
F 5 HOH A 83 2183 33 HOH HOH . 
F 5 HOH A 84 2184 51 HOH HOH . 
F 5 HOH A 85 2185 150 HOH HOH . 
F 5 HOH A 86 2186 158 HOH HOH . 
F 5 HOH A 87 2187 8 HOH HOH . 
F 5 HOH A 88 2188 119 HOH HOH . 
F 5 HOH A 89 2189 36 HOH HOH . 
G 5 HOH B 1 1101 103 HOH HOH . 
G 5 HOH B 2 1102 69 HOH HOH . 
G 5 HOH B 3 1103 116 HOH HOH . 
G 5 HOH B 4 1104 160 HOH HOH . 
G 5 HOH B 5 1105 40 HOH HOH . 
G 5 HOH B 6 1106 152 HOH HOH . 
G 5 HOH B 7 1107 93 HOH HOH . 
G 5 HOH B 8 1108 41 HOH HOH . 
G 5 HOH B 9 1109 83 HOH HOH . 
G 5 HOH B 10 1110 115 HOH HOH . 
G 5 HOH B 11 1111 161 HOH HOH . 
G 5 HOH B 12 1112 39 HOH HOH . 
G 5 HOH B 13 1113 80 HOH HOH . 
G 5 HOH B 14 1114 99 HOH HOH . 
G 5 HOH B 15 1115 18 HOH HOH . 
G 5 HOH B 16 1116 6 HOH HOH . 
G 5 HOH B 17 1117 91 HOH HOH . 
G 5 HOH B 18 1118 126 HOH HOH . 
G 5 HOH B 19 1119 132 HOH HOH . 
G 5 HOH B 20 1120 100 HOH HOH . 
G 5 HOH B 21 1121 129 HOH HOH . 
G 5 HOH B 22 1122 21 HOH HOH . 
G 5 HOH B 23 1123 1 HOH HOH . 
G 5 HOH B 24 1124 140 HOH HOH . 
G 5 HOH B 25 1125 96 HOH HOH . 
G 5 HOH B 26 1126 3 HOH HOH . 
G 5 HOH B 27 1127 134 HOH HOH . 
G 5 HOH B 28 1128 108 HOH HOH . 
G 5 HOH B 29 1129 127 HOH HOH . 
G 5 HOH B 30 1130 4 HOH HOH . 
G 5 HOH B 31 1131 102 HOH HOH . 
G 5 HOH B 32 1132 66 HOH HOH . 
G 5 HOH B 33 1133 95 HOH HOH . 
G 5 HOH B 34 1134 71 HOH HOH . 
G 5 HOH B 35 1135 125 HOH HOH . 
G 5 HOH B 36 1136 124 HOH HOH . 
G 5 HOH B 37 1137 101 HOH HOH . 
G 5 HOH B 38 1138 82 HOH HOH . 
G 5 HOH B 39 1139 55 HOH HOH . 
G 5 HOH B 40 1140 65 HOH HOH . 
G 5 HOH B 41 1141 73 HOH HOH . 
G 5 HOH B 42 1142 135 HOH HOH . 
G 5 HOH B 43 1143 56 HOH HOH . 
G 5 HOH B 44 1144 84 HOH HOH . 
G 5 HOH B 45 1145 54 HOH HOH . 
G 5 HOH B 46 1146 122 HOH HOH . 
G 5 HOH B 47 1147 121 HOH HOH . 
G 5 HOH B 48 1148 105 HOH HOH . 
G 5 HOH B 49 1149 57 HOH HOH . 
G 5 HOH B 50 1150 149 HOH HOH . 
G 5 HOH B 51 1151 133 HOH HOH . 
G 5 HOH B 52 1152 89 HOH HOH . 
G 5 HOH B 53 1153 23 HOH HOH . 
G 5 HOH B 54 1154 128 HOH HOH . 
G 5 HOH B 55 1155 117 HOH HOH . 
G 5 HOH B 56 1156 25 HOH HOH . 
G 5 HOH B 57 1157 120 HOH HOH . 
G 5 HOH B 58 1158 42 HOH HOH . 
G 5 HOH B 59 1159 24 HOH HOH . 
G 5 HOH B 60 1160 130 HOH HOH . 
G 5 HOH B 61 1161 63 HOH HOH . 
G 5 HOH B 62 1162 48 HOH HOH . 
G 5 HOH B 63 1163 68 HOH HOH . 
G 5 HOH B 64 1164 34 HOH HOH . 
G 5 HOH B 65 1165 11 HOH HOH . 
G 5 HOH B 66 1166 64 HOH HOH . 
G 5 HOH B 67 1167 81 HOH HOH . 
G 5 HOH B 68 1168 19 HOH HOH . 
G 5 HOH B 69 1169 131 HOH HOH . 
G 5 HOH B 70 1170 16 HOH HOH . 
G 5 HOH B 71 1171 17 HOH HOH . 
G 5 HOH B 72 1172 58 HOH HOH . 
G 5 HOH B 73 1173 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -9.458 16.532 69.121 1 79.93 ? C1 GOL 1001 B 1 
HETATM 2 O O1 GOL . . . D 4 -9.728 16.774 67.736 1 75.26 ? O1 GOL 1001 B 1 
HETATM 3 C C2 GOL . . . D 4 -9.999 17.693 69.952 1 81.81 ? C2 GOL 1001 B 1 
HETATM 4 O O2 GOL . . . D 4 -11.376 17.895 69.617 1 79.78 ? O2 GOL 1001 B 1 
HETATM 5 C C3 GOL . . . D 4 -9.828 17.419 71.45 1 84.74 ? C3 GOL 1001 B 1 
HETATM 6 O O3 GOL . . . D 4 -10.921 17.963 72.205 1 85.21 ? O3 GOL 1001 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#