data_6GZO # _model_server_result.job_id ppoh4kTWQ9iC4FcY-iTShA _model_server_result.datetime_utc '2024-10-30 22:10:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6GZO # _exptl.entry_id 6GZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GZO _cell.length_a 167.32 _cell.length_b 167.32 _cell.length_c 192.81 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6GZO _atom_sites.fract_transf_matrix[1][1] 0.005977 _atom_sites.fract_transf_matrix[1][2] 0.003451 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 1 ANP ANP . D 3 NAD A 1 402 1 NAD NAD . E 4 PO4 A 1 403 1 PO4 PO4 . F 2 ANP B 1 401 2 ANP ANP . G 3 NAD B 1 402 2 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . A . C 2 27.26 58.903 2.116 0.31 113.6 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . A . C 2 27.067 57.92 0.986 0.31 113.23 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . A . C 2 27.624 60.295 1.658 0.31 111.64 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . A . C 2 28.128 58.382 3.236 0.31 108.39 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . A . C 2 25.333 58.352 4.388 0.31 108.65 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . A . C 2 23.919 57.823 4.362 0.31 95.61 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . A . C 2 25.706 59.349 5.458 0.31 101.38 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . A . C 2 25.672 59.073 2.831 0.31 107.38 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . A . C 2 26.258 55.852 3.538 0.31 133.85 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . A . C 2 27.439 55.978 2.605 0.31 127.35 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . A . C 2 26.051 54.579 4.322 0.31 134.32 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . A . C 2 26.304 57.081 4.578 0.31 119.85 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . A . C 2 24.918 56.148 2.697 0.31 142.2 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . A . C 2 23.88 55.173 2.623 0.31 142.18 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . A . C 2 22.9 55.387 3.769 0.31 141.5 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . A . C 2 21.69 54.668 3.514 0.31 142.25 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . A . C 2 23.472 54.887 5.087 0.31 136.56 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . A . C 2 23.692 55.995 5.97 0.31 116.42 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . A . C 2 22.463 53.886 5.633 0.31 139.84 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . A . C 2 21.915 54.285 6.897 0.31 139.54 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . A . C 2 21.35 53.8 4.599 0.31 138.99 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . A . C 2 21.229 52.404 4.108 0.31 137.77 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . A . C 2 20.799 52.034 2.887 0.31 141 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . A . C 2 20.806 50.683 2.753 0.31 139.14 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . A . C 2 21.249 50.165 3.913 0.31 136.01 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . A . C 2 21.5 48.806 4.449 0.31 128.73 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . A . C 2 21.271 47.703 3.696 0.31 123.05 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . A . C 2 21.965 48.705 5.714 0.31 127.75 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . A . C 2 22.197 49.793 6.472 0.31 128.08 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . A . C 2 21.992 51.054 6.05 0.31 128.3 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . A . C 2 21.527 51.303 4.803 0.31 133.01 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #