data_6GZO # _model_server_result.job_id 44S9K_tSVpR_CPUDdGXbDA _model_server_result.datetime_utc '2024-10-30 22:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6GZO # _exptl.entry_id 6GZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GZO _cell.length_a 167.32 _cell.length_b 167.32 _cell.length_c 192.81 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6GZO _atom_sites.fract_transf_matrix[1][1] 0.005977 _atom_sites.fract_transf_matrix[1][2] 0.003451 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 1 ANP ANP . D 3 NAD A 1 402 1 NAD NAD . E 4 PO4 A 1 403 1 PO4 PO4 . F 2 ANP B 1 401 2 ANP ANP . G 3 NAD B 1 402 2 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . A . F 2 -11.577 45.021 20.232 0.35 125.87 ? PG ANP 401 B 1 HETATM 2 O O1G ANP . A . F 2 -12.308 45.988 19.331 0.35 130.46 ? O1G ANP 401 B 1 HETATM 3 O O2G ANP . A . F 2 -10.828 43.941 19.49 0.35 117.45 ? O2G ANP 401 B 1 HETATM 4 O O3G ANP . A . F 2 -12.414 44.506 21.379 0.35 126.1 ? O3G ANP 401 B 1 HETATM 5 P PB ANP . A . F 2 -10.636 47.659 21.388 0.35 126.8 ? PB ANP 401 B 1 HETATM 6 O O1B ANP . A . F 2 -11.105 48.355 20.132 0.35 133.16 ? O1B ANP 401 B 1 HETATM 7 O O2B ANP . A . F 2 -9.418 48.201 22.098 0.35 121.13 ? O2B ANP 401 B 1 HETATM 8 N N3B ANP . A . F 2 -10.329 45.983 20.992 0.35 122.07 ? N3B ANP 401 B 1 HETATM 9 P PA ANP . A . F 2 -11.975 48.889 23.528 0.35 125.43 ? PA ANP 401 B 1 HETATM 10 O O1A ANP . A . F 2 -10.621 49.083 24.169 0.35 127.4 ? O1A ANP 401 B 1 HETATM 11 O O2A ANP . A . F 2 -13.18 48.608 24.394 0.35 116.9 ? O2A ANP 401 B 1 HETATM 12 O O3A ANP . A . F 2 -11.859 47.711 22.435 0.35 122.24 ? O3A ANP 401 B 1 HETATM 13 O O5' ANP . A . F 2 -12.298 50.184 22.627 0.35 134.46 ? O5' ANP 401 B 1 HETATM 14 C C5' ANP . A . F 2 -11.397 50.604 21.605 0.35 141.55 ? C5' ANP 401 B 1 HETATM 15 C C4' ANP . A . F 2 -10.017 50.842 22.206 0.35 145.56 ? C4' ANP 401 B 1 HETATM 16 O O4' ANP . A . F 2 -9.136 51.357 21.204 0.35 147.24 ? O4' ANP 401 B 1 HETATM 17 C C3' ANP . A . F 2 -10.075 51.852 23.342 0.35 146 ? C3' ANP 401 B 1 HETATM 18 O O3' ANP . A . F 2 -9.706 51.217 24.572 0.35 147.21 ? O3' ANP 401 B 1 HETATM 19 C C2' ANP . A . F 2 -9.13 52.981 22.953 0.35 145.59 ? C2' ANP 401 B 1 HETATM 20 O O2' ANP . A . F 2 -8.069 53.168 23.898 0.35 139.23 ? O2' ANP 401 B 1 HETATM 21 C C1' ANP . A . F 2 -8.55 52.6 21.599 0.35 147.56 ? C1' ANP 401 B 1 HETATM 22 N N9 ANP . A . F 2 -8.875 53.649 20.601 0.35 139.5 ? N9 ANP 401 B 1 HETATM 23 C C8 ANP . A . F 2 -9.342 53.433 19.357 0.35 140.11 ? C8 ANP 401 B 1 HETATM 24 N N7 ANP . A . F 2 -9.538 54.604 18.697 0.35 139.89 ? N7 ANP 401 B 1 HETATM 25 C C5 ANP . A . F 2 -9.191 55.6 19.532 0.35 139.41 ? C5 ANP 401 B 1 HETATM 26 C C6 ANP . A . F 2 -9.154 57.081 19.471 0.35 132.33 ? C6 ANP 401 B 1 HETATM 27 N N6 ANP . A . F 2 -9.539 57.746 18.355 0.35 128.73 ? N6 ANP 401 B 1 HETATM 28 N N1 ANP . A . F 2 -8.724 57.745 20.567 0.35 130.89 ? N1 ANP 401 B 1 HETATM 29 C C2 ANP . A . F 2 -8.34 57.096 21.682 0.35 131.93 ? C2 ANP 401 B 1 HETATM 30 N N3 ANP . A . F 2 -8.347 55.757 21.807 0.35 136.27 ? N3 ANP 401 B 1 HETATM 31 C C4 ANP . A . F 2 -8.755 54.966 20.785 0.35 139.61 ? C4 ANP 401 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #