data_6GZO # _model_server_result.job_id WKvt-FtPRY_-eJff6tEaHw _model_server_result.datetime_utc '2024-10-30 22:15:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6GZO # _exptl.entry_id 6GZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GZO _cell.length_a 167.32 _cell.length_b 167.32 _cell.length_c 192.81 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 285 n n PA O2A NAD sing 286 n n PA O5B NAD sing 287 n n PA O3 NAD sing 288 n n O2A HOA2 NAD sing 289 n n O5B C5B NAD sing 290 n n C5B C4B NAD sing 291 n n C5B H51A NAD sing 292 n n C5B H52A NAD sing 293 n n C4B O4B NAD sing 294 n n C4B C3B NAD sing 295 n n C4B H4B NAD sing 296 n n O4B C1B NAD sing 297 n n C3B O3B NAD sing 298 n n C3B C2B NAD sing 299 n n C3B H3B NAD sing 300 n n O3B HO3A NAD sing 301 n n C2B O2B NAD sing 302 n n C2B C1B NAD sing 303 n n C2B H2B NAD sing 304 n n O2B HO2A NAD sing 305 n n C1B N9A NAD sing 306 n n C1B H1B NAD sing 307 n n N9A C8A NAD sing 308 n y N9A C4A NAD sing 309 n y C8A N7A NAD doub 310 n y C8A H8A NAD sing 311 n n N7A C5A NAD sing 312 n y C5A C6A NAD sing 313 n y C5A C4A NAD doub 314 n y C6A N6A NAD sing 315 n n C6A N1A NAD doub 316 n y N6A H61A NAD sing 317 n n N6A H62A NAD sing 318 n n N1A C2A NAD sing 319 n y C2A N3A NAD doub 320 n y C2A H2A NAD sing 321 n n N3A C4A NAD sing 322 n y O3 PN NAD sing 323 n n PN O1N NAD doub 324 n n PN O2N NAD sing 325 n n PN O5D NAD sing 326 n n O5D C5D NAD sing 327 n n C5D C4D NAD sing 328 n n C5D H51N NAD sing 329 n n C5D H52N NAD sing 330 n n C4D O4D NAD sing 331 n n C4D C3D NAD sing 332 n n C4D H4D NAD sing 333 n n O4D C1D NAD sing 334 n n C3D O3D NAD sing 335 n n C3D C2D NAD sing 336 n n C3D H3D NAD sing 337 n n O3D HO3N NAD sing 338 n n C2D O2D NAD sing 339 n n C2D C1D NAD sing 340 n n C2D H2D NAD sing 341 n n O2D HO2N NAD sing 342 n n C1D N1N NAD sing 343 n n C1D H1D NAD sing 344 n n N1N C2N NAD sing 345 n y N1N C6N NAD doub 346 n y C2N C3N NAD doub 347 n y C2N H2N NAD sing 348 n n C3N C7N NAD sing 349 n n C3N C4N NAD sing 350 n y C7N O7N NAD doub 351 n n C7N N7N NAD sing 352 n n N7N H71N NAD sing 353 n n N7N H72N NAD sing 354 n n C4N C5N NAD doub 355 n y C4N H4N NAD sing 356 n n C5N C6N NAD sing 357 n y C5N H5N NAD sing 358 n n C6N H6N NAD sing 359 n n # _atom_sites.entry_id 6GZO _atom_sites.fract_transf_matrix[1][1] 0.005977 _atom_sites.fract_transf_matrix[1][2] 0.003451 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 1 ANP ANP . D 3 NAD A 1 402 1 NAD NAD . E 4 PO4 A 1 403 1 PO4 PO4 . F 2 ANP B 1 401 2 ANP ANP . G 3 NAD B 1 402 2 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . B . D 3 18.597 56.625 1.03 0.69 138.84 ? PA NAD 402 A 1 HETATM 2 O O1A NAD . B . D 3 18.708 55.679 -0.141 0.69 139.13 ? O1A NAD 402 A 1 HETATM 3 O O2A NAD . B . D 3 19.084 58.049 0.896 0.69 116.47 ? O2A NAD 402 A 1 HETATM 4 O O5B NAD . B . D 3 19.342 55.955 2.29 0.69 133.97 ? O5B NAD 402 A 1 HETATM 5 C C5B NAD . B . D 3 20.527 55.186 2.1 0.69 141.44 ? C5B NAD 402 A 1 HETATM 6 C C4B NAD . B . D 3 21.429 55.324 3.32 0.69 144.91 ? C4B NAD 402 A 1 HETATM 7 O O4B NAD . B . D 3 20.979 54.442 4.352 0.69 141.55 ? O4B NAD 402 A 1 HETATM 8 C C3B NAD . B . D 3 22.866 54.955 2.985 0.69 143.38 ? C3B NAD 402 A 1 HETATM 9 O O3B NAD . B . D 3 23.726 56.07 3.253 0.69 146.88 ? O3B NAD 402 A 1 HETATM 10 C C2B NAD . B . D 3 23.198 53.736 3.836 0.69 139.59 ? C2B NAD 402 A 1 HETATM 11 O O2B NAD . B . D 3 24.301 53.962 4.724 0.69 135.29 ? O2B NAD 402 A 1 HETATM 12 C C1B NAD . B . D 3 21.945 53.429 4.642 0.69 138.92 ? C1B NAD 402 A 1 HETATM 13 N N9A NAD . B . D 3 21.407 52.105 4.245 0.69 138.2 ? N9A NAD 402 A 1 HETATM 14 C C8A NAD . B . D 3 20.428 51.892 3.345 0.69 137.18 ? C8A NAD 402 A 1 HETATM 15 N N7A NAD . B . D 3 20.167 50.567 3.208 0.69 139.89 ? N7A NAD 402 A 1 HETATM 16 C C5A NAD . B . D 3 20.994 49.905 4.038 0.69 133.45 ? C5A NAD 402 A 1 HETATM 17 C C6A NAD . B . D 3 21.245 48.487 4.388 0.69 126.85 ? C6A NAD 402 A 1 HETATM 18 N N6A NAD . B . D 3 20.539 47.487 3.808 0.69 122.07 ? N6A NAD 402 A 1 HETATM 19 N N1A NAD . B . D 3 22.202 48.226 5.306 0.69 125.38 ? N1A NAD 402 A 1 HETATM 20 C C2A NAD . B . D 3 22.91 49.211 5.89 0.69 127.82 ? C2A NAD 402 A 1 HETATM 21 N N3A NAD . B . D 3 22.736 50.517 5.62 0.69 129.21 ? N3A NAD 402 A 1 HETATM 22 C C4A NAD . B . D 3 21.809 50.923 4.719 0.69 132.09 ? C4A NAD 402 A 1 HETATM 23 O O3 NAD . B . D 3 17.058 56.662 1.5 0.69 153.97 ? O3 NAD 402 A 1 HETATM 24 P PN NAD . B . D 3 15.882 56.823 0.411 0.69 154.7 ? PN NAD 402 A 1 HETATM 25 O O1N NAD . B . D 3 16.339 57.821 -0.626 0.69 137.84 ? O1N NAD 402 A 1 HETATM 26 O O2N NAD . B . D 3 15.441 55.443 -0.014 0.69 148.44 ? O2N NAD 402 A 1 HETATM 27 O O5D NAD . B . D 3 14.692 57.492 1.265 0.69 148.72 ? O5D NAD 402 A 1 HETATM 28 C C5D NAD . B . D 3 13.441 57.795 0.651 0.69 135.64 ? C5D NAD 402 A 1 HETATM 29 C C4D NAD . B . D 3 13.68 58.29 -0.77 0.69 132.62 ? C4D NAD 402 A 1 HETATM 30 O O4D NAD . B . D 3 12.563 57.957 -1.599 0.69 136.39 ? O4D NAD 402 A 1 HETATM 31 C C3D NAD . B . D 3 13.852 59.802 -0.81 0.69 123.14 ? C3D NAD 402 A 1 HETATM 32 O O3D NAD . B . D 3 15.202 60.126 -1.17 0.69 94.76 ? O3D NAD 402 A 1 HETATM 33 C C2D NAD . B . D 3 12.834 60.315 -1.82 0.69 134.71 ? C2D NAD 402 A 1 HETATM 34 O O2D NAD . B . D 3 13.438 61.03 -2.905 0.69 133.34 ? O2D NAD 402 A 1 HETATM 35 C C1D NAD . B . D 3 12.113 59.086 -2.353 0.69 140.7 ? C1D NAD 402 A 1 HETATM 36 N N1N NAD . B . D 3 10.667 59.256 -2.193 0.69 147.96 ? N1N NAD 402 A 1 HETATM 37 C C2N NAD . B . D 3 10.199 60.036 -1.211 0.69 148.09 ? C2N NAD 402 A 1 HETATM 38 C C3N NAD . B . D 3 8.831 60.214 -1.039 0.69 141.68 ? C3N NAD 402 A 1 HETATM 39 C C7N NAD . B . D 3 8.317 61.09 0.065 0.69 130.27 ? C7N NAD 402 A 1 HETATM 40 O O7N NAD . B . D 3 9.088 61.482 0.925 0.69 127.3 ? O7N NAD 402 A 1 HETATM 41 N N7N NAD . B . D 3 7.026 61.417 0.076 0.69 117.17 ? N7N NAD 402 A 1 HETATM 42 C C4N NAD . B . D 3 7.944 59.578 -1.896 0.69 139.2 ? C4N NAD 402 A 1 HETATM 43 C C5N NAD . B . D 3 8.455 58.775 -2.907 0.69 137.77 ? C5N NAD 402 A 1 HETATM 44 C C6N NAD . B . D 3 9.832 58.631 -3.034 0.69 143.73 ? C6N NAD 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #