data_6H00 # _model_server_result.job_id u1eByiwUxMdONO9M7PkCUg _model_server_result.datetime_utc '2024-12-22 18:05:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6H00 # _exptl.entry_id 6H00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6H00 _cell.length_a 83.33 _cell.length_b 83.33 _cell.length_c 58.93 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -19.643333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6H00 _atom_sites.fract_transf_matrix[1][1] 0.012 _atom_sites.fract_transf_matrix[1][2] 0.006928 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 2 SO4 SO4 . C 2 SO4 A 1 302 3 SO4 SO4 . D 2 SO4 A 1 303 4 SO4 SO4 . E 3 FMN A 1 304 1 FMN FMN . F 4 EDO A 1 305 1 EDO EDO . G 4 EDO A 1 306 2 EDO EDO . H 4 EDO A 1 307 3 EDO EDO . I 4 EDO A 1 308 5 EDO EDO . J 5 HOH A 1 401 36 HOH HOH . J 5 HOH A 2 402 29 HOH HOH . J 5 HOH A 3 403 12 HOH HOH . J 5 HOH A 4 404 20 HOH HOH . J 5 HOH A 5 405 26 HOH HOH . J 5 HOH A 6 406 14 HOH HOH . J 5 HOH A 7 407 34 HOH HOH . J 5 HOH A 8 408 21 HOH HOH . J 5 HOH A 9 409 19 HOH HOH . J 5 HOH A 10 410 7 HOH HOH . J 5 HOH A 11 411 38 HOH HOH . J 5 HOH A 12 412 23 HOH HOH . J 5 HOH A 13 413 27 HOH HOH . J 5 HOH A 14 414 10 HOH HOH . J 5 HOH A 15 415 33 HOH HOH . J 5 HOH A 16 416 9 HOH HOH . J 5 HOH A 17 417 35 HOH HOH . J 5 HOH A 18 418 24 HOH HOH . J 5 HOH A 19 419 17 HOH HOH . J 5 HOH A 20 420 43 HOH HOH . J 5 HOH A 21 421 2 HOH HOH . J 5 HOH A 22 422 3 HOH HOH . J 5 HOH A 23 423 44 HOH HOH . J 5 HOH A 24 424 18 HOH HOH . J 5 HOH A 25 425 25 HOH HOH . J 5 HOH A 26 426 39 HOH HOH . J 5 HOH A 27 427 16 HOH HOH . J 5 HOH A 28 428 32 HOH HOH . J 5 HOH A 29 429 41 HOH HOH . J 5 HOH A 30 430 30 HOH HOH . J 5 HOH A 31 431 4 HOH HOH . J 5 HOH A 32 432 37 HOH HOH . J 5 HOH A 33 433 15 HOH HOH . J 5 HOH A 34 434 45 HOH HOH . J 5 HOH A 35 435 6 HOH HOH . J 5 HOH A 36 436 22 HOH HOH . J 5 HOH A 37 437 5 HOH HOH . J 5 HOH A 38 438 31 HOH HOH . J 5 HOH A 39 439 40 HOH HOH . J 5 HOH A 40 440 8 HOH HOH . J 5 HOH A 41 441 42 HOH HOH . J 5 HOH A 42 442 11 HOH HOH . J 5 HOH A 43 443 1 HOH HOH . J 5 HOH A 44 444 13 HOH HOH . J 5 HOH A 45 445 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -12.385 -11.845 0.636 1 48.63 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 4 -12.859 -12.898 1.519 1 47.48 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 4 -13.114 -11.918 -0.706 1 43.39 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 4 -13.004 -13.232 -1.29 1 41.27 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #