data_6H06
#
_model_server_result.job_id            fJBce6U7Bukbao6VinlZ3w 
_model_server_result.datetime_utc      '2024-11-16 14:02:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    6H06 
#
_exptl.entry_id    6H06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.81 
_cell.angle_gamma         90 
_cell.entry_id            6H06 
_cell.length_a            108.055 
_cell.length_b            96.209 
_cell.length_c            108.984 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,M,R,S 1 1 
C,D,L,N,O,T,U 2 1 
E,F,J,P,V 3 1 
G,H,K,Q,W,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 101 H CYS 101 1_555 A SG CYS 106 H CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 148 H CYS 148 1_555 A SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf5 B SG CYS 139 L CYS 139 1_555 B SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 C SG CYS 22 A CYS 22 1_555 C SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf7 C SG CYS 101 A CYS 101 1_555 C SG CYS 106 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 C SG CYS 148 A CYS 148 1_555 C SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 D SG CYS 23 B CYS 23 1_555 D SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf10 D SG CYS 139 B CYS 139 1_555 D SG CYS 199 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf11 E SG CYS 22 C CYS 22 1_555 E SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf12 E SG CYS 101 C CYS 101 1_555 E SG CYS 106 C CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf13 E SG CYS 148 C CYS 148 1_555 E SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf14 F SG CYS 23 D CYS 23 1_555 F SG CYS 93 D CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf15 F SG CYS 139 D CYS 139 1_555 F SG CYS 199 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf16 G SG CYS 22 E CYS 22 1_555 G SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 G SG CYS 101 E CYS 101 1_555 G SG CYS 106 E CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf18 G SG CYS 148 E CYS 148 1_555 G SG CYS 204 E CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf19 H SG CYS 23 F CYS 23 1_555 H SG CYS 93 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf20 H SG CYS 139 F CYS 139 1_555 H SG CYS 199 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A C PCA 1 H PCA 1 1_555 A N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 C C PCA 1 A PCA 1 1_555 C N VAL 2 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 E C PCA 1 C PCA 1 1_555 E N VAL 2 C VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 G C PCA 1 E PCA 1 1_555 G N VAL 2 E VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 I C ASP 18 I ASP 421 1_555 I N SEP 19 I SEP 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 I C SEP 19 I SEP 422 1_555 I N PRO 20 I PRO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale7 J C ASP 18 G ASP 421 1_555 J N SEP 19 G SEP 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 J C SEP 19 G SEP 422 1_555 J N PRO 20 G PRO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale9 K C ASP 18 J ASP 421 1_555 K N SEP 19 J SEP 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 K C SEP 19 J SEP 422 1_555 K N PRO 20 J PRO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale11 L C ASP 18 K ASP 421 1_555 L N SEP 19 K SEP 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale12 L C SEP 19 K SEP 422 1_555 L N PRO 20 K PRO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6H06 
_atom_sites.fract_transf_matrix[1][1]    0.009255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003891 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 GOL L 1 301 5 GOL GOL . 
N 4 GOL A 1 301 4 GOL GOL . 
O 4 GOL B 1 301 2 GOL GOL . 
P 4 GOL D 1 301 3 GOL GOL . 
Q 4 GOL F 1 301 1 GOL GOL . 
R 5 HOH H 1 301 17 HOH HOH . 
R 5 HOH H 2 302 32 HOH HOH . 
R 5 HOH H 3 303 41 HOH HOH . 
R 5 HOH H 4 304 5 HOH HOH . 
S 5 HOH L 1 401 39 HOH HOH . 
S 5 HOH L 2 402 36 HOH HOH . 
S 5 HOH L 3 403 16 HOH HOH . 
S 5 HOH L 4 404 6 HOH HOH . 
S 5 HOH L 5 405 4 HOH HOH . 
S 5 HOH L 6 406 35 HOH HOH . 
S 5 HOH L 7 407 31 HOH HOH . 
S 5 HOH L 8 408 38 HOH HOH . 
S 5 HOH L 9 409 25 HOH HOH . 
S 5 HOH L 10 410 15 HOH HOH . 
T 5 HOH A 1 401 29 HOH HOH . 
T 5 HOH A 2 402 24 HOH HOH . 
T 5 HOH A 3 403 28 HOH HOH . 
T 5 HOH A 4 404 23 HOH HOH . 
T 5 HOH A 5 405 3 HOH HOH . 
T 5 HOH A 6 406 7 HOH HOH . 
T 5 HOH A 7 407 33 HOH HOH . 
T 5 HOH A 8 408 26 HOH HOH . 
U 5 HOH B 1 401 13 HOH HOH . 
U 5 HOH B 2 402 20 HOH HOH . 
U 5 HOH B 3 403 2 HOH HOH . 
U 5 HOH B 4 404 14 HOH HOH . 
V 5 HOH D 1 401 10 HOH HOH . 
V 5 HOH D 2 402 8 HOH HOH . 
V 5 HOH D 3 403 44 HOH HOH . 
V 5 HOH D 4 404 11 HOH HOH . 
V 5 HOH D 5 405 9 HOH HOH . 
V 5 HOH D 6 406 19 HOH HOH . 
W 5 HOH E 1 301 40 HOH HOH . 
W 5 HOH E 2 302 43 HOH HOH . 
W 5 HOH E 3 303 45 HOH HOH . 
W 5 HOH E 4 304 42 HOH HOH . 
W 5 HOH E 5 305 34 HOH HOH . 
W 5 HOH E 6 306 18 HOH HOH . 
W 5 HOH E 7 307 30 HOH HOH . 
X 5 HOH F 1 401 22 HOH HOH . 
X 5 HOH F 2 402 21 HOH HOH . 
X 5 HOH F 3 403 1 HOH HOH . 
X 5 HOH F 4 404 27 HOH HOH . 
X 5 HOH F 5 405 37 HOH HOH . 
X 5 HOH F 6 406 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 4 13.502 -5.572 57.518 1 65.33 ? C1 GOL 301 L 1 
HETATM 2 O O1 GOL . . . M 4 14.172 -6.096 56.362 1 60.82 ? O1 GOL 301 L 1 
HETATM 3 C C2 GOL . . . M 4 13.356 -6.629 58.614 1 77.54 ? C2 GOL 301 L 1 
HETATM 4 O O2 GOL . . . M 4 13.595 -7.946 58.1 1 92.8 ? O2 GOL 301 L 1 
HETATM 5 C C3 GOL . . . M 4 14.342 -6.357 59.752 1 74.46 ? C3 GOL 301 L 1 
HETATM 6 O O3 GOL . . . M 4 13.854 -5.365 60.673 1 69.08 ? O3 GOL 301 L 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#