data_6H0G # _model_server_result.job_id sUFvQ3lWzWe03_xezSPqAA _model_server_result.datetime_utc '2024-11-30 07:35:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h0g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 6H0G # _exptl.entry_id 6H0G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.244 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-Pomalidomide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.49 _cell.angle_gamma 90 _cell.entry_id 6H0G _cell.length_a 112.51 _cell.length_b 99.53 _cell.length_c 166.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H0G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I 1 1 D,E,F,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 307 B CYS 323 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc2 B SG CYS 310 B CYS 326 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 B SG CYS 375 B CYS 391 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc4 B SG CYS 378 B CYS 394 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc5 C SG CYS 8 C CYS 419 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc6 C SG CYS 11 C CYS 422 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc7 C NE2 HIS 24 C HIS 435 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc8 C NE2 HIS 28 C HIS 439 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc9 E SG CYS 307 E CYS 323 1_555 J ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc10 E SG CYS 310 E CYS 326 1_555 J ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc11 E SG CYS 375 E CYS 391 1_555 J ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc12 E SG CYS 378 E CYS 394 1_555 J ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc13 F SG CYS 8 F CYS 419 1_555 L ZN ZN . F ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc14 F SG CYS 11 F CYS 422 1_555 L ZN ZN . F ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc15 F NE2 HIS 28 F HIS 439 1_555 L ZN ZN . F ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C13 H11 N3 O4' _chem_comp.formula_weight 273.244 _chem_comp.id Y70 _chem_comp.mon_nstd_flag . _chem_comp.name S-Pomalidomide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 Y70 sing 374 n y C1 C6 Y70 doub 375 n y C2 C3 Y70 doub 376 n y C3 C4 Y70 sing 377 n y C4 C5 Y70 doub 378 n y C4 C7 Y70 sing 379 n n C5 C6 Y70 sing 380 n y C5 C9 Y70 sing 381 n n C6 N10 Y70 sing 382 n n C7 N8 Y70 sing 383 n n C7 O13 Y70 doub 384 n n N8 C9 Y70 sing 385 n n N8 C12 Y70 sing 386 n n C9 O11 Y70 doub 387 n n C12 C14 Y70 sing 388 n n C12 C15 Y70 sing 389 n n C14 C18 Y70 sing 390 n n C15 N16 Y70 sing 391 n n C15 O19 Y70 doub 392 n n N16 C17 Y70 sing 393 n n C17 C18 Y70 sing 394 n n C17 O20 Y70 doub 395 n n C1 H1 Y70 sing 396 n n C2 H2 Y70 sing 397 n n C3 H3 Y70 sing 398 n n N10 H101 Y70 sing 399 n n N10 H102 Y70 sing 400 n n C12 H12 Y70 sing 401 n n C14 H141 Y70 sing 402 n n C14 H142 Y70 sing 403 n n C18 H181 Y70 sing 404 n n C18 H182 Y70 sing 405 n n N16 H16 Y70 sing 406 n n # _atom_sites.entry_id 6H0G _atom_sites.fract_transf_matrix[1][1] 0.008888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002972 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN B 1 501 999 ZN ZN . H 5 Y70 B 1 502 1000 Y70 Y70 . I 4 ZN C 1 501 999 ZN ZN . J 4 ZN E 1 501 999 ZN ZN . K 5 Y70 E 1 502 1000 Y70 Y70 . L 4 ZN F 1 501 999 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y70 . . . K 5 -51.914 13.908 -64.033 1 75 ? C1 Y70 502 E 1 HETATM 2 C C2 Y70 . . . K 5 -51.862 14.021 -62.632 1 75 ? C2 Y70 502 E 1 HETATM 3 C C3 Y70 . . . K 5 -51.559 15.251 -62.044 1 75 ? C3 Y70 502 E 1 HETATM 4 C C4 Y70 . . . K 5 -51.295 16.376 -62.859 1 75 ? C4 Y70 502 E 1 HETATM 5 C C5 Y70 . . . K 5 -51.31 16.257 -64.259 1 75 ? C5 Y70 502 E 1 HETATM 6 C C6 Y70 . . . K 5 -51.629 15.019 -64.842 1 75 ? C6 Y70 502 E 1 HETATM 7 C C7 Y70 . . . K 5 -50.953 17.853 -62.523 1 75 ? C7 Y70 502 E 1 HETATM 8 N N8 Y70 . . . K 5 -50.797 18.577 -63.785 1 75 ? N8 Y70 502 E 1 HETATM 9 C C9 Y70 . . . K 5 -50.972 17.635 -64.897 1 75 ? C9 Y70 502 E 1 HETATM 10 N N10 Y70 . . . K 5 -51.705 14.641 -66.24 1 75 ? N10 Y70 502 E 1 HETATM 11 O O11 Y70 . . . K 5 -50.907 17.868 -66.077 1 75 ? O11 Y70 502 E 1 HETATM 12 C C12 Y70 . . . K 5 -50.447 20.012 -63.897 1 75 ? C12 Y70 502 E 1 HETATM 13 O O13 Y70 . . . K 5 -50.897 18.312 -61.42 1 75 ? O13 Y70 502 E 1 HETATM 14 C C14 Y70 . . . K 5 -48.987 20.079 -64.285 1 75 ? C14 Y70 502 E 1 HETATM 15 C C15 Y70 . . . K 5 -51.392 20.695 -64.905 1 75 ? C15 Y70 502 E 1 HETATM 16 N N16 Y70 . . . K 5 -50.792 21.914 -65.499 1 75 ? N16 Y70 502 E 1 HETATM 17 C C17 Y70 . . . K 5 -49.409 22.431 -65.272 1 75 ? C17 Y70 502 E 1 HETATM 18 C C18 Y70 . . . K 5 -48.506 21.497 -64.436 1 75 ? C18 Y70 502 E 1 HETATM 19 O O19 Y70 . . . K 5 -52.492 20.33 -65.161 1 75 ? O19 Y70 502 E 1 HETATM 20 O O20 Y70 . . . K 5 -49.016 23.43 -65.793 1 75 ? O20 Y70 502 E 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #