data_6H0N # _model_server_result.job_id YP4cDRzp87EJI9gPI3qzzQ _model_server_result.datetime_utc '2024-12-22 02:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6H0N # _exptl.entry_id 6H0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6H0N _cell.length_a 146.028 _cell.length_b 146.028 _cell.length_c 132.845 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6H0N _atom_sites.fract_transf_matrix[1][1] 0.006848 _atom_sites.fract_transf_matrix[1][2] 0.003954 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 800 NAD NAD . D 3 UDP A 1 402 900 UDP UDP . E 4 PO4 A 1 403 902 PO4 PO4 . F 2 NAD B 1 401 800 NAD NAD . G 3 UDP B 1 402 900 UDP UDP . H 4 PO4 B 1 403 902 PO4 PO4 . I 5 HOH A 1 501 112 HOH HOH . I 5 HOH A 2 502 24 HOH HOH . I 5 HOH A 3 503 52 HOH HOH . I 5 HOH A 4 504 20 HOH HOH . I 5 HOH A 5 505 31 HOH HOH . I 5 HOH A 6 506 23 HOH HOH . I 5 HOH A 7 507 29 HOH HOH . I 5 HOH A 8 508 32 HOH HOH . I 5 HOH A 9 509 13 HOH HOH . I 5 HOH A 10 510 12 HOH HOH . I 5 HOH A 11 511 33 HOH HOH . I 5 HOH A 12 512 14 HOH HOH . J 5 HOH B 1 501 95 HOH HOH . J 5 HOH B 2 502 34 HOH HOH . J 5 HOH B 3 503 28 HOH HOH . J 5 HOH B 4 504 15 HOH HOH . J 5 HOH B 5 505 11 HOH HOH . J 5 HOH B 6 506 13 HOH HOH . J 5 HOH B 7 507 37 HOH HOH . J 5 HOH B 8 508 25 HOH HOH . J 5 HOH B 9 509 12 HOH HOH . J 5 HOH B 10 510 11 HOH HOH . J 5 HOH B 11 511 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 -12.576 54.143 70.972 1 71.15 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . C 2 -11.447 53.281 70.471 1 67.27 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . C 2 -12.768 54.324 72.458 1 76.98 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . C 2 -13.937 53.526 70.407 1 81.67 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . C 2 -13.861 52.534 69.38 1 79.26 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . C 2 -14.469 51.246 69.89 1 72.49 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . C 2 -14.755 50.532 68.71 1 73.26 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . C 2 -13.571 50.383 70.757 1 67.65 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . C 2 -14.269 50.036 71.957 1 66.97 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . C 2 -13.254 49.18 69.899 1 68.88 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . C 2 -13.253 47.887 70.521 1 66.95 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . C 2 -14.393 49.198 68.907 1 72.61 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . C 2 -13.956 48.472 67.699 1 72.82 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . C 2 -12.92 48.688 66.863 1 71.12 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . C 2 -12.887 47.728 65.933 1 66.29 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . C 2 -13.908 46.889 66.206 1 66.63 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . C 2 -14.507 45.658 65.657 1 65.61 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . C 2 -13.99 45.06 64.579 1 67.35 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . C 2 -15.603 45.141 66.247 1 72.62 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . C 2 -16.175 45.678 67.345 1 75.79 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . C 2 -15.682 46.787 67.898 1 74.52 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . C 2 -14.595 47.397 67.37 1 68.94 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . C 2 -12.392 55.548 70.211 1 65.04 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . C 2 -13.494 56.696 70.293 1 70.84 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . C 2 -12.863 57.962 70.815 1 62.37 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . C 2 -14.768 56.101 70.929 1 69.16 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . C 2 -13.672 56.929 68.703 1 74.4 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . C 2 -14.947 56.7 68.086 1 75.77 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . C 2 -14.999 57.32 66.702 1 76.22 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . C 2 -14.765 58.733 66.749 1 75.01 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . C 2 -13.927 56.739 65.786 1 80.19 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . C 2 -14.516 56.389 64.516 1 86.57 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . C 2 -12.898 57.841 65.643 1 73.99 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . C 2 -12.309 57.744 64.344 1 70.18 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . C 2 -13.688 59.125 65.883 1 74.02 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . C 2 -12.93 60.273 66.444 1 77.36 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . C 2 -12.76 60.468 67.776 1 82.12 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . C 2 -12.057 61.583 68.296 1 83.3 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . C 2 -11.868 61.82 69.782 1 77.48 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . C 2 -11.393 62.868 70.155 1 71.91 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . C 2 -12.208 60.938 70.714 1 75.83 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . C 2 -11.521 62.509 67.389 1 87.26 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . C 2 -11.71 62.297 66.026 1 87.77 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . C 2 -12.419 61.174 65.59 1 84.45 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #