data_6H1D
#
_model_server_result.job_id            8My9U4jGpaa6_lWhE6A5Bg 
_model_server_result.datetime_utc      '2024-11-16 23:25:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h1d 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
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_entry.id    6H1D 
#
_exptl.entry_id    6H1D 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H1D 
_cell.length_a            71.841 
_cell.length_b            71.841 
_cell.length_c            131.113 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6H1D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    'P 4n 2n' 
_symmetry.space_group_name_H-M     'P 42 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     6H1D 
_atom_sites.fract_transf_matrix[1][1]    0.01392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01392 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007627 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SAH A 1 301 301 SAH SAH . 
D 4 HOH A 1 401 48 HOH HOH . 
D 4 HOH A 2 402 17 HOH HOH . 
D 4 HOH A 3 403 9 HOH HOH . 
D 4 HOH A 4 404 15 HOH HOH . 
D 4 HOH A 5 405 22 HOH HOH . 
D 4 HOH A 6 406 42 HOH HOH . 
D 4 HOH A 7 407 32 HOH HOH . 
D 4 HOH A 8 408 24 HOH HOH . 
D 4 HOH A 9 409 38 HOH HOH . 
D 4 HOH A 10 410 29 HOH HOH . 
D 4 HOH A 11 411 8 HOH HOH . 
D 4 HOH A 12 412 36 HOH HOH . 
D 4 HOH A 13 413 19 HOH HOH . 
D 4 HOH A 14 414 30 HOH HOH . 
D 4 HOH A 15 415 7 HOH HOH . 
D 4 HOH A 16 416 21 HOH HOH . 
D 4 HOH A 17 417 20 HOH HOH . 
D 4 HOH A 18 418 10 HOH HOH . 
D 4 HOH A 19 419 33 HOH HOH . 
D 4 HOH A 20 420 31 HOH HOH . 
D 4 HOH A 21 421 47 HOH HOH . 
D 4 HOH A 22 422 28 HOH HOH . 
D 4 HOH A 23 423 46 HOH HOH . 
E 4 HOH B 1 201 3 HOH HOH . 
E 4 HOH B 2 202 45 HOH HOH . 
E 4 HOH B 3 203 18 HOH HOH . 
E 4 HOH B 4 204 44 HOH HOH . 
E 4 HOH B 5 205 11 HOH HOH . 
E 4 HOH B 6 206 2 HOH HOH . 
E 4 HOH B 7 207 40 HOH HOH . 
E 4 HOH B 8 208 37 HOH HOH . 
E 4 HOH B 9 209 14 HOH HOH . 
E 4 HOH B 10 210 43 HOH HOH . 
E 4 HOH B 11 211 1 HOH HOH . 
E 4 HOH B 12 212 35 HOH HOH . 
E 4 HOH B 13 213 4 HOH HOH . 
E 4 HOH B 14 214 6 HOH HOH . 
E 4 HOH B 15 215 41 HOH HOH . 
E 4 HOH B 16 216 12 HOH HOH . 
E 4 HOH B 17 217 5 HOH HOH . 
E 4 HOH B 18 218 26 HOH HOH . 
E 4 HOH B 19 219 23 HOH HOH . 
E 4 HOH B 20 220 16 HOH HOH . 
E 4 HOH B 21 221 34 HOH HOH . 
E 4 HOH B 22 222 49 HOH HOH . 
E 4 HOH B 23 223 13 HOH HOH . 
E 4 HOH B 24 224 39 HOH HOH . 
E 4 HOH B 25 225 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 3 -14.156 -11.827 -22.198 1 24.19 ? N SAH 301 A 1 
HETATM 2 C CA SAH . . . C 3 -12.782 -12.328 -22.282 1 30.08 ? CA SAH 301 A 1 
HETATM 3 C CB SAH . . . C 3 -12.575 -13.622 -21.498 1 20.76 ? CB SAH 301 A 1 
HETATM 4 C CG SAH . . . C 3 -13.243 -14.879 -22.061 1 25.13 ? CG SAH 301 A 1 
HETATM 5 S SD SAH . . . C 3 -12.567 -16.366 -21.268 1 25.11 ? SD SAH 301 A 1 
HETATM 6 C C SAH . . . C 3 -12.413 -12.578 -23.729 1 34.6 ? C SAH 301 A 1 
HETATM 7 O O SAH . . . C 3 -13.294 -12.737 -24.574 1 33.76 ? O SAH 301 A 1 
HETATM 8 O OXT SAH . . . C 3 -11.226 -12.64 -24.064 1 37.93 ? OXT SAH 301 A 1 
HETATM 9 C C5' SAH . . . C 3 -14.025 -16.659 -20.231 1 26.3 ? C5' SAH 301 A 1 
HETATM 10 C C4' SAH . . . C 3 -13.986 -15.866 -18.924 1 18.67 ? C4' SAH 301 A 1 
HETATM 11 O O4' SAH . . . C 3 -15.179 -16.151 -18.21 1 21.6 ? O4' SAH 301 A 1 
HETATM 12 C C3' SAH . . . C 3 -12.823 -16.261 -18.015 1 19.58 ? C3' SAH 301 A 1 
HETATM 13 O O3' SAH . . . C 3 -12.168 -15.1 -17.553 1 17.17 ? O3' SAH 301 A 1 
HETATM 14 C C2' SAH . . . C 3 -13.469 -16.971 -16.826 1 16.67 ? C2' SAH 301 A 1 
HETATM 15 O O2' SAH . . . C 3 -12.806 -16.734 -15.595 1 17.75 ? O2' SAH 301 A 1 
HETATM 16 C C1' SAH . . . C 3 -14.858 -16.367 -16.851 1 13.29 ? C1' SAH 301 A 1 
HETATM 17 N N9 SAH . . . C 3 -15.862 -17.23 -16.217 1 20.24 ? N9 SAH 301 A 1 
HETATM 18 C C8 SAH . . . C 3 -16.002 -18.582 -16.356 1 19.96 ? C8 SAH 301 A 1 
HETATM 19 N N7 SAH . . . C 3 -17.034 -18.985 -15.593 1 18.84 ? N7 SAH 301 A 1 
HETATM 20 C C5 SAH . . . C 3 -17.557 -17.912 -14.965 1 21.88 ? C5 SAH 301 A 1 
HETATM 21 C C6 SAH . . . C 3 -18.606 -17.762 -14.068 1 20.8 ? C6 SAH 301 A 1 
HETATM 22 N N6 SAH . . . C 3 -19.355 -18.801 -13.668 1 20.16 ? N6 SAH 301 A 1 
HETATM 23 N N1 SAH . . . C 3 -18.882 -16.498 -13.602 1 18.49 ? N1 SAH 301 A 1 
HETATM 24 C C2 SAH . . . C 3 -18.129 -15.412 -13.989 1 19.19 ? C2 SAH 301 A 1 
HETATM 25 N N3 SAH . . . C 3 -17.083 -15.571 -14.866 1 22.77 ? N3 SAH 301 A 1 
HETATM 26 C C4 SAH . . . C 3 -16.809 -16.8 -15.347 1 19.38 ? C4 SAH 301 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           436 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#