data_6H1E
#
_model_server_result.job_id            GnWaDQy3sEnMkuJALNQjCA 
_model_server_result.datetime_utc      '2024-11-29 10:47:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h1e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6H1E 
#
_exptl.entry_id    6H1E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H1E 
_cell.length_a            71.231 
_cell.length_b            71.231 
_cell.length_c            130.808 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H1E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    'P 4n 2n' 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C GLY 11 S GLY 11 1_555 C N MLZ 12 S MLZ 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 C C MLZ 12 S MLZ 12 1_555 C N GLY 13 S GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 303 n n 
N HN1 SAH sing 304 n n 
N HN2 SAH sing 305 n n 
CA CB SAH sing 306 n n 
CA C SAH sing 307 n n 
CA HA SAH sing 308 n n 
CB CG SAH sing 309 n n 
CB HB1 SAH sing 310 n n 
CB HB2 SAH sing 311 n n 
CG SD SAH sing 312 n n 
CG HG1 SAH sing 313 n n 
CG HG2 SAH sing 314 n n 
SD C5' SAH sing 315 n n 
C O SAH doub 316 n n 
C OXT SAH sing 317 n n 
OXT HXT SAH sing 318 n n 
C5' C4' SAH sing 319 n n 
C5' "H5'1" SAH sing 320 n n 
C5' "H5'2" SAH sing 321 n n 
C4' O4' SAH sing 322 n n 
C4' C3' SAH sing 323 n n 
C4' H4' SAH sing 324 n n 
O4' C1' SAH sing 325 n n 
C3' O3' SAH sing 326 n n 
C3' C2' SAH sing 327 n n 
C3' H3' SAH sing 328 n n 
O3' HO3' SAH sing 329 n n 
C2' O2' SAH sing 330 n n 
C2' C1' SAH sing 331 n n 
C2' H2' SAH sing 332 n n 
O2' HO2' SAH sing 333 n n 
C1' N9 SAH sing 334 n n 
C1' H1' SAH sing 335 n n 
N9 C8 SAH sing 336 n y 
N9 C4 SAH sing 337 n y 
C8 N7 SAH doub 338 n y 
C8 H8 SAH sing 339 n n 
N7 C5 SAH sing 340 n y 
C5 C6 SAH sing 341 n y 
C5 C4 SAH doub 342 n y 
C6 N6 SAH sing 343 n n 
C6 N1 SAH doub 344 n y 
N6 HN61 SAH sing 345 n n 
N6 HN62 SAH sing 346 n n 
N1 C2 SAH sing 347 n y 
C2 N3 SAH doub 348 n y 
C2 H2 SAH sing 349 n n 
N3 C4 SAH sing 350 n y 
#
_atom_sites.entry_id                     6H1E 
_atom_sites.fract_transf_matrix[1][1]    0.014039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014039 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007645 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 SAH A 1 301 301 SAH SAH . 
E 5 HOH A 1 401 67 HOH HOH . 
E 5 HOH A 2 402 61 HOH HOH . 
E 5 HOH A 3 403 73 HOH HOH . 
E 5 HOH A 4 404 52 HOH HOH . 
E 5 HOH A 5 405 2 HOH HOH . 
E 5 HOH A 6 406 9 HOH HOH . 
E 5 HOH A 7 407 34 HOH HOH . 
E 5 HOH A 8 408 77 HOH HOH . 
E 5 HOH A 9 409 75 HOH HOH . 
E 5 HOH A 10 410 49 HOH HOH . 
E 5 HOH A 11 411 48 HOH HOH . 
E 5 HOH A 12 412 26 HOH HOH . 
E 5 HOH A 13 413 50 HOH HOH . 
E 5 HOH A 14 414 8 HOH HOH . 
E 5 HOH A 15 415 51 HOH HOH . 
E 5 HOH A 16 416 5 HOH HOH . 
E 5 HOH A 17 417 78 HOH HOH . 
E 5 HOH A 18 418 79 HOH HOH . 
E 5 HOH A 19 419 54 HOH HOH . 
E 5 HOH A 20 420 69 HOH HOH . 
E 5 HOH A 21 421 17 HOH HOH . 
E 5 HOH A 22 422 36 HOH HOH . 
E 5 HOH A 23 423 25 HOH HOH . 
E 5 HOH A 24 424 43 HOH HOH . 
E 5 HOH A 25 425 16 HOH HOH . 
E 5 HOH A 26 426 55 HOH HOH . 
E 5 HOH A 27 427 62 HOH HOH . 
E 5 HOH A 28 428 44 HOH HOH . 
E 5 HOH A 29 429 41 HOH HOH . 
E 5 HOH A 30 430 35 HOH HOH . 
E 5 HOH A 31 431 58 HOH HOH . 
E 5 HOH A 32 432 56 HOH HOH . 
E 5 HOH A 33 433 19 HOH HOH . 
E 5 HOH A 34 434 76 HOH HOH . 
E 5 HOH A 35 435 53 HOH HOH . 
E 5 HOH A 36 436 28 HOH HOH . 
E 5 HOH A 37 437 64 HOH HOH . 
E 5 HOH A 38 438 70 HOH HOH . 
F 5 HOH B 1 201 63 HOH HOH . 
F 5 HOH B 2 202 65 HOH HOH . 
F 5 HOH B 3 203 1 HOH HOH . 
F 5 HOH B 4 204 7 HOH HOH . 
F 5 HOH B 5 205 3 HOH HOH . 
F 5 HOH B 6 206 4 HOH HOH . 
F 5 HOH B 7 207 33 HOH HOH . 
F 5 HOH B 8 208 23 HOH HOH . 
F 5 HOH B 9 209 21 HOH HOH . 
F 5 HOH B 10 210 37 HOH HOH . 
F 5 HOH B 11 211 31 HOH HOH . 
F 5 HOH B 12 212 10 HOH HOH . 
F 5 HOH B 13 213 14 HOH HOH . 
F 5 HOH B 14 214 38 HOH HOH . 
F 5 HOH B 15 215 11 HOH HOH . 
F 5 HOH B 16 216 59 HOH HOH . 
F 5 HOH B 17 217 18 HOH HOH . 
F 5 HOH B 18 218 15 HOH HOH . 
F 5 HOH B 19 219 24 HOH HOH . 
F 5 HOH B 20 220 27 HOH HOH . 
F 5 HOH B 21 221 32 HOH HOH . 
F 5 HOH B 22 222 39 HOH HOH . 
F 5 HOH B 23 223 6 HOH HOH . 
F 5 HOH B 24 224 40 HOH HOH . 
F 5 HOH B 25 225 20 HOH HOH . 
F 5 HOH B 26 226 47 HOH HOH . 
F 5 HOH B 27 227 71 HOH HOH . 
F 5 HOH B 28 228 66 HOH HOH . 
F 5 HOH B 29 229 60 HOH HOH . 
F 5 HOH B 30 230 46 HOH HOH . 
F 5 HOH B 31 231 30 HOH HOH . 
F 5 HOH B 32 232 22 HOH HOH . 
F 5 HOH B 33 233 74 HOH HOH . 
F 5 HOH B 34 234 68 HOH HOH . 
F 5 HOH B 35 235 81 HOH HOH . 
F 5 HOH B 36 236 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 4 -13.876 -11.796 -22.077 1 23.04 ? N SAH 301 A 1 
HETATM 2 C CA SAH . . . D 4 -12.481 -12.227 -22.181 1 20.77 ? CA SAH 301 A 1 
HETATM 3 C CB SAH . . . D 4 -12.237 -13.507 -21.383 1 21.27 ? CB SAH 301 A 1 
HETATM 4 C CG SAH . . . D 4 -12.813 -14.791 -21.97 1 26.26 ? CG SAH 301 A 1 
HETATM 5 S SD SAH . . . D 4 -12.147 -16.235 -21.089 1 27.81 ? SD SAH 301 A 1 
HETATM 6 C C SAH . . . D 4 -12.149 -12.429 -23.657 1 30.81 ? C SAH 301 A 1 
HETATM 7 O O SAH . . . D 4 -13.046 -12.328 -24.5 1 32.99 ? O SAH 301 A 1 
HETATM 8 O OXT SAH . . . D 4 -11.01 -12.705 -24.04 1 32.95 ? OXT SAH 301 A 1 
HETATM 9 C C5' SAH . . . D 4 -13.684 -16.498 -20.174 1 27.53 ? C5' SAH 301 A 1 
HETATM 10 C C4' SAH . . . D 4 -13.669 -15.796 -18.823 1 21.97 ? C4' SAH 301 A 1 
HETATM 11 O O4' SAH . . . D 4 -14.843 -16.212 -18.181 1 24.73 ? O4' SAH 301 A 1 
HETATM 12 C C3' SAH . . . D 4 -12.512 -16.188 -17.9 1 25.25 ? C3' SAH 301 A 1 
HETATM 13 O O3' SAH . . . D 4 -11.893 -15.013 -17.405 1 29.54 ? O3' SAH 301 A 1 
HETATM 14 C C2' SAH . . . D 4 -13.163 -16.983 -16.773 1 24.83 ? C2' SAH 301 A 1 
HETATM 15 O O2' SAH . . . D 4 -12.562 -16.801 -15.503 1 23.68 ? O2' SAH 301 A 1 
HETATM 16 C C1' SAH . . . D 4 -14.577 -16.419 -16.822 1 22.69 ? C1' SAH 301 A 1 
HETATM 17 N N9 SAH . . . D 4 -15.631 -17.256 -16.233 1 22.87 ? N9 SAH 301 A 1 
HETATM 18 C C8 SAH . . . D 4 -15.852 -18.59 -16.43 1 29.05 ? C8 SAH 301 A 1 
HETATM 19 N N7 SAH . . . D 4 -16.918 -18.957 -15.688 1 24.16 ? N7 SAH 301 A 1 
HETATM 20 C C5 SAH . . . D 4 -17.402 -17.884 -15.032 1 21.5 ? C5 SAH 301 A 1 
HETATM 21 C C6 SAH . . . D 4 -18.472 -17.712 -14.153 1 22.42 ? C6 SAH 301 A 1 
HETATM 22 N N6 SAH . . . D 4 -19.266 -18.721 -13.793 1 21.27 ? N6 SAH 301 A 1 
HETATM 23 N N1 SAH . . . D 4 -18.711 -16.464 -13.622 1 23.66 ? N1 SAH 301 A 1 
HETATM 24 C C2 SAH . . . D 4 -17.892 -15.412 -13.974 1 21.22 ? C2 SAH 301 A 1 
HETATM 25 N N3 SAH . . . D 4 -16.837 -15.583 -14.851 1 18.28 ? N3 SAH 301 A 1 
HETATM 26 C C4 SAH . . . D 4 -16.595 -16.807 -15.373 1 21.09 ? C4 SAH 301 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#