data_6H2A # _model_server_result.job_id 4eXCfea-svMCA4aVkcYnsQ _model_server_result.datetime_utc '2024-11-28 02:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":403}' # _entry.id 6H2A # _exptl.entry_id 6H2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H2A _cell.length_a 108.864 _cell.length_b 108.864 _cell.length_c 260.577 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,U 1 1 B,L,M,N,O,P,Q,V 2 1 C,R,S,T,W 3 1 D,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 P N N ? 6 Q N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C6 TAM . A TAM 501 1_555 I P PO4 . A PO4 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? covale ? covale2 E C6 TAM . A TAM 501 1_555 I O4 PO4 . A PO4 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.544 ? covale ? covale3 E O6 TAM . A TAM 501 1_555 I P PO4 . A PO4 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 6H2A _atom_sites.fract_transf_matrix[1][1] 0.009186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TAM A 1 501 501 TAM TAM . F 4 DTT A 1 502 4 DTT DTT . G 5 PO4 A 1 503 3 PO4 PO4 . H 5 PO4 A 1 504 5 PO4 PO4 . I 5 PO4 A 1 505 6 PO4 PO4 . J 3 TAM A 1 506 2 TAM TAM . K 6 GOL A 1 507 3 GOL GOL . L 4 DTT B 1 401 401 DTT DTT . M 4 DTT B 1 402 5 DTT DTT . N 5 PO4 B 1 403 1 PO4 PO4 . O 5 PO4 B 1 404 4 PO4 PO4 . P 6 GOL B 1 405 1 GOL GOL . Q 6 GOL B 1 406 4 GOL GOL . R 4 DTT C 1 401 401 DTT DTT . S 5 PO4 C 1 402 7 PO4 PO4 . T 6 GOL C 1 403 2 GOL GOL . U 7 HOH A 1 601 18 HOH HOH . U 7 HOH A 2 602 46 HOH HOH . U 7 HOH A 3 603 23 HOH HOH . U 7 HOH A 4 604 6 HOH HOH . U 7 HOH A 5 605 28 HOH HOH . U 7 HOH A 6 606 65 HOH HOH . U 7 HOH A 7 607 43 HOH HOH . U 7 HOH A 8 608 21 HOH HOH . U 7 HOH A 9 609 64 HOH HOH . U 7 HOH A 10 610 34 HOH HOH . U 7 HOH A 11 611 16 HOH HOH . U 7 HOH A 12 612 15 HOH HOH . U 7 HOH A 13 613 69 HOH HOH . U 7 HOH A 14 614 8 HOH HOH . U 7 HOH A 15 615 24 HOH HOH . U 7 HOH A 16 616 66 HOH HOH . U 7 HOH A 17 617 12 HOH HOH . U 7 HOH A 18 618 63 HOH HOH . U 7 HOH A 19 619 53 HOH HOH . U 7 HOH A 20 620 51 HOH HOH . U 7 HOH A 21 621 67 HOH HOH . U 7 HOH A 22 622 9 HOH HOH . U 7 HOH A 23 623 17 HOH HOH . U 7 HOH A 24 624 55 HOH HOH . U 7 HOH A 25 625 61 HOH HOH . V 7 HOH B 1 501 58 HOH HOH . V 7 HOH B 2 502 45 HOH HOH . V 7 HOH B 3 503 47 HOH HOH . V 7 HOH B 4 504 7 HOH HOH . V 7 HOH B 5 505 26 HOH HOH . V 7 HOH B 6 506 5 HOH HOH . V 7 HOH B 7 507 40 HOH HOH . V 7 HOH B 8 508 35 HOH HOH . V 7 HOH B 9 509 59 HOH HOH . V 7 HOH B 10 510 57 HOH HOH . V 7 HOH B 11 511 25 HOH HOH . V 7 HOH B 12 512 2 HOH HOH . V 7 HOH B 13 513 70 HOH HOH . V 7 HOH B 14 514 71 HOH HOH . V 7 HOH B 15 515 20 HOH HOH . V 7 HOH B 16 516 68 HOH HOH . V 7 HOH B 17 517 62 HOH HOH . V 7 HOH B 18 518 30 HOH HOH . W 7 HOH C 1 501 50 HOH HOH . W 7 HOH C 2 502 37 HOH HOH . W 7 HOH C 3 503 38 HOH HOH . W 7 HOH C 4 504 4 HOH HOH . W 7 HOH C 5 505 1 HOH HOH . W 7 HOH C 6 506 32 HOH HOH . W 7 HOH C 7 507 22 HOH HOH . W 7 HOH C 8 508 13 HOH HOH . W 7 HOH C 9 509 41 HOH HOH . X 7 HOH H 1 101 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . T 6 27.705 15.709 -10.437 1 81.2 ? C1 GOL 403 C 1 HETATM 2 O O1 GOL . . . T 6 26.761 16.202 -9.467 1 77.61 ? O1 GOL 403 C 1 HETATM 3 C C2 GOL . . . T 6 29.028 16.505 -10.671 1 80.73 ? C2 GOL 403 C 1 HETATM 4 O O2 GOL . . . T 6 29.939 16.434 -9.554 1 77.72 ? O2 GOL 403 C 1 HETATM 5 C C3 GOL . . . T 6 29.829 15.945 -11.864 1 75.14 ? C3 GOL 403 C 1 HETATM 6 O O3 GOL . . . T 6 31.153 15.599 -11.442 1 60.48 ? O3 GOL 403 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #