data_6H2A
#
_model_server_result.job_id            ydjTcxib-l6AGwWuQrgU-A 
_model_server_result.datetime_utc      '2024-11-24 09:08:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h2a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    6H2A 
#
_exptl.entry_id    6H2A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H2A 
_cell.length_a            108.864 
_cell.length_b            108.864 
_cell.length_c            260.577 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H2A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,U 1 1 
B,L,M,N,O,P,Q,V 2 1 
C,R,S,T,W 3 1 
D,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
? 4 M N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C6 TAM . A TAM 501 1_555 I P PO4 . A PO4 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? 
covale ? covale2 E C6 TAM . A TAM 501 1_555 I O4 PO4 . A PO4 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.544 ? 
covale ? covale3 E O6 TAM . A TAM 501 1_555 I P PO4 . A PO4 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 83 n n 
S1 HS1 DTT sing 84 n n 
C1 C2 DTT sing 85 n n 
C1 H11 DTT sing 86 n n 
C1 H12 DTT sing 87 n n 
C2 O2 DTT sing 88 n n 
C2 C3 DTT sing 89 n n 
C2 H2 DTT sing 90 n n 
O2 HO2 DTT sing 91 n n 
C3 O3 DTT sing 92 n n 
C3 C4 DTT sing 93 n n 
C3 H3 DTT sing 94 n n 
O3 HO3 DTT sing 95 n n 
C4 S4 DTT sing 96 n n 
C4 H41 DTT sing 97 n n 
C4 H42 DTT sing 98 n n 
S4 HS2 DTT sing 99 n n 
#
_atom_sites.entry_id                     6H2A 
_atom_sites.fract_transf_matrix[1][1]    0.009186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003838 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 TAM A 1 501 501 TAM TAM . 
F 4 DTT A 1 502 4 DTT DTT . 
G 5 PO4 A 1 503 3 PO4 PO4 . 
H 5 PO4 A 1 504 5 PO4 PO4 . 
I 5 PO4 A 1 505 6 PO4 PO4 . 
J 3 TAM A 1 506 2 TAM TAM . 
K 6 GOL A 1 507 3 GOL GOL . 
L 4 DTT B 1 401 401 DTT DTT . 
M 4 DTT B 1 402 5 DTT DTT . 
N 5 PO4 B 1 403 1 PO4 PO4 . 
O 5 PO4 B 1 404 4 PO4 PO4 . 
P 6 GOL B 1 405 1 GOL GOL . 
Q 6 GOL B 1 406 4 GOL GOL . 
R 4 DTT C 1 401 401 DTT DTT . 
S 5 PO4 C 1 402 7 PO4 PO4 . 
T 6 GOL C 1 403 2 GOL GOL . 
U 7 HOH A 1 601 18 HOH HOH . 
U 7 HOH A 2 602 46 HOH HOH . 
U 7 HOH A 3 603 23 HOH HOH . 
U 7 HOH A 4 604 6 HOH HOH . 
U 7 HOH A 5 605 28 HOH HOH . 
U 7 HOH A 6 606 65 HOH HOH . 
U 7 HOH A 7 607 43 HOH HOH . 
U 7 HOH A 8 608 21 HOH HOH . 
U 7 HOH A 9 609 64 HOH HOH . 
U 7 HOH A 10 610 34 HOH HOH . 
U 7 HOH A 11 611 16 HOH HOH . 
U 7 HOH A 12 612 15 HOH HOH . 
U 7 HOH A 13 613 69 HOH HOH . 
U 7 HOH A 14 614 8 HOH HOH . 
U 7 HOH A 15 615 24 HOH HOH . 
U 7 HOH A 16 616 66 HOH HOH . 
U 7 HOH A 17 617 12 HOH HOH . 
U 7 HOH A 18 618 63 HOH HOH . 
U 7 HOH A 19 619 53 HOH HOH . 
U 7 HOH A 20 620 51 HOH HOH . 
U 7 HOH A 21 621 67 HOH HOH . 
U 7 HOH A 22 622 9 HOH HOH . 
U 7 HOH A 23 623 17 HOH HOH . 
U 7 HOH A 24 624 55 HOH HOH . 
U 7 HOH A 25 625 61 HOH HOH . 
V 7 HOH B 1 501 58 HOH HOH . 
V 7 HOH B 2 502 45 HOH HOH . 
V 7 HOH B 3 503 47 HOH HOH . 
V 7 HOH B 4 504 7 HOH HOH . 
V 7 HOH B 5 505 26 HOH HOH . 
V 7 HOH B 6 506 5 HOH HOH . 
V 7 HOH B 7 507 40 HOH HOH . 
V 7 HOH B 8 508 35 HOH HOH . 
V 7 HOH B 9 509 59 HOH HOH . 
V 7 HOH B 10 510 57 HOH HOH . 
V 7 HOH B 11 511 25 HOH HOH . 
V 7 HOH B 12 512 2 HOH HOH . 
V 7 HOH B 13 513 70 HOH HOH . 
V 7 HOH B 14 514 71 HOH HOH . 
V 7 HOH B 15 515 20 HOH HOH . 
V 7 HOH B 16 516 68 HOH HOH . 
V 7 HOH B 17 517 62 HOH HOH . 
V 7 HOH B 18 518 30 HOH HOH . 
W 7 HOH C 1 501 50 HOH HOH . 
W 7 HOH C 2 502 37 HOH HOH . 
W 7 HOH C 3 503 38 HOH HOH . 
W 7 HOH C 4 504 4 HOH HOH . 
W 7 HOH C 5 505 1 HOH HOH . 
W 7 HOH C 6 506 32 HOH HOH . 
W 7 HOH C 7 507 22 HOH HOH . 
W 7 HOH C 8 508 13 HOH HOH . 
W 7 HOH C 9 509 41 HOH HOH . 
X 7 HOH H 1 101 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . . . F 4 25.917 -24.461 -55.835 1 87.29 ? S1 DTT 502 A 1 
HETATM 2 C C1 DTT . . . F 4 27.022 -23.152 -56.485 1 108.14 ? C1 DTT 502 A 1 
HETATM 3 C C2 DTT . . . F 4 28.249 -23.667 -57.278 1 110.58 ? C2 DTT 502 A 1 
HETATM 4 O O2 DTT . . . F 4 28.832 -24.743 -56.523 1 107.34 ? O2 DTT 502 A 1 
HETATM 5 C C3 DTT . . . F 4 29.284 -22.563 -57.685 1 110.62 ? C3 DTT 502 A 1 
HETATM 6 O O3 DTT . . . F 4 30.648 -22.817 -57.293 1 107.73 ? O3 DTT 502 A 1 
HETATM 7 C C4 DTT . . . F 4 29.386 -22.315 -59.204 1 109.81 ? C4 DTT 502 A 1 
HETATM 8 S S4 DTT . . . F 4 29.463 -20.544 -59.624 1 113.93 ? S4 DTT 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#