data_6H33 # _model_server_result.job_id sXzpvUnKLeSTV2QniClqFg _model_server_result.datetime_utc '2024-11-05 10:57:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6H33 # _exptl.entry_id 6H33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.17 _cell.angle_gamma 90 _cell.entry_id 6H33 _cell.length_a 42.3 _cell.length_b 41.2 _cell.length_c 71.78 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 96 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc2 A NE2 HIS 98 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc3 A ND1 HIS 121 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N1 FKQ . A FKQ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 6H33 _atom_sites.fract_transf_matrix[1][1] 0.023641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005969 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 FKQ A 1 302 263 FKQ RG2 . D 4 GOL A 1 303 264 GOL GOL . E 5 HOH A 1 401 364 HOH HOH . E 5 HOH A 2 402 511 HOH HOH . E 5 HOH A 3 403 456 HOH HOH . E 5 HOH A 4 404 363 HOH HOH . E 5 HOH A 5 405 481 HOH HOH . E 5 HOH A 6 406 506 HOH HOH . E 5 HOH A 7 407 460 HOH HOH . E 5 HOH A 8 408 327 HOH HOH . E 5 HOH A 9 409 489 HOH HOH . E 5 HOH A 10 410 447 HOH HOH . E 5 HOH A 11 411 508 HOH HOH . E 5 HOH A 12 412 444 HOH HOH . E 5 HOH A 13 413 504 HOH HOH . E 5 HOH A 14 414 457 HOH HOH . E 5 HOH A 15 415 493 HOH HOH . E 5 HOH A 16 416 341 HOH HOH . E 5 HOH A 17 417 342 HOH HOH . E 5 HOH A 18 418 319 HOH HOH . E 5 HOH A 19 419 434 HOH HOH . E 5 HOH A 20 420 433 HOH HOH . E 5 HOH A 21 421 345 HOH HOH . E 5 HOH A 22 422 330 HOH HOH . E 5 HOH A 23 423 467 HOH HOH . E 5 HOH A 24 424 374 HOH HOH . E 5 HOH A 25 425 332 HOH HOH . E 5 HOH A 26 426 399 HOH HOH . E 5 HOH A 27 427 412 HOH HOH . E 5 HOH A 28 428 348 HOH HOH . E 5 HOH A 29 429 301 HOH HOH . E 5 HOH A 30 430 314 HOH HOH . E 5 HOH A 31 431 400 HOH HOH . E 5 HOH A 32 432 525 HOH HOH . E 5 HOH A 33 433 306 HOH HOH . E 5 HOH A 34 434 402 HOH HOH . E 5 HOH A 35 435 518 HOH HOH . E 5 HOH A 36 436 322 HOH HOH . E 5 HOH A 37 437 480 HOH HOH . E 5 HOH A 38 438 313 HOH HOH . E 5 HOH A 39 439 499 HOH HOH . E 5 HOH A 40 440 377 HOH HOH . E 5 HOH A 41 441 496 HOH HOH . E 5 HOH A 42 442 323 HOH HOH . E 5 HOH A 43 443 448 HOH HOH . E 5 HOH A 44 444 373 HOH HOH . E 5 HOH A 45 445 463 HOH HOH . E 5 HOH A 46 446 418 HOH HOH . E 5 HOH A 47 447 321 HOH HOH . E 5 HOH A 48 448 432 HOH HOH . E 5 HOH A 49 449 484 HOH HOH . E 5 HOH A 50 450 455 HOH HOH . E 5 HOH A 51 451 360 HOH HOH . E 5 HOH A 52 452 392 HOH HOH . E 5 HOH A 53 453 339 HOH HOH . E 5 HOH A 54 454 343 HOH HOH . E 5 HOH A 55 455 383 HOH HOH . E 5 HOH A 56 456 368 HOH HOH . E 5 HOH A 57 457 354 HOH HOH . E 5 HOH A 58 458 472 HOH HOH . E 5 HOH A 59 459 329 HOH HOH . E 5 HOH A 60 460 515 HOH HOH . E 5 HOH A 61 461 312 HOH HOH . E 5 HOH A 62 462 328 HOH HOH . E 5 HOH A 63 463 420 HOH HOH . E 5 HOH A 64 464 318 HOH HOH . E 5 HOH A 65 465 351 HOH HOH . E 5 HOH A 66 466 500 HOH HOH . E 5 HOH A 67 467 316 HOH HOH . E 5 HOH A 68 468 486 HOH HOH . E 5 HOH A 69 469 302 HOH HOH . E 5 HOH A 70 470 466 HOH HOH . E 5 HOH A 71 471 395 HOH HOH . E 5 HOH A 72 472 349 HOH HOH . E 5 HOH A 73 473 438 HOH HOH . E 5 HOH A 74 474 350 HOH HOH . E 5 HOH A 75 475 403 HOH HOH . E 5 HOH A 76 476 391 HOH HOH . E 5 HOH A 77 477 361 HOH HOH . E 5 HOH A 78 478 309 HOH HOH . E 5 HOH A 79 479 510 HOH HOH . E 5 HOH A 80 480 379 HOH HOH . E 5 HOH A 81 481 366 HOH HOH . E 5 HOH A 82 482 304 HOH HOH . E 5 HOH A 83 483 422 HOH HOH . E 5 HOH A 84 484 421 HOH HOH . E 5 HOH A 85 485 305 HOH HOH . E 5 HOH A 86 486 398 HOH HOH . E 5 HOH A 87 487 451 HOH HOH . E 5 HOH A 88 488 324 HOH HOH . E 5 HOH A 89 489 357 HOH HOH . E 5 HOH A 90 490 509 HOH HOH . E 5 HOH A 91 491 352 HOH HOH . E 5 HOH A 92 492 512 HOH HOH . E 5 HOH A 93 493 308 HOH HOH . E 5 HOH A 94 494 378 HOH HOH . E 5 HOH A 95 495 417 HOH HOH . E 5 HOH A 96 496 394 HOH HOH . E 5 HOH A 97 497 413 HOH HOH . E 5 HOH A 98 498 338 HOH HOH . E 5 HOH A 99 499 380 HOH HOH . E 5 HOH A 100 500 440 HOH HOH . E 5 HOH A 101 501 311 HOH HOH . E 5 HOH A 102 502 362 HOH HOH . E 5 HOH A 103 503 340 HOH HOH . E 5 HOH A 104 504 491 HOH HOH . E 5 HOH A 105 505 405 HOH HOH . E 5 HOH A 106 506 406 HOH HOH . E 5 HOH A 107 507 344 HOH HOH . E 5 HOH A 108 508 382 HOH HOH . E 5 HOH A 109 509 303 HOH HOH . E 5 HOH A 110 510 523 HOH HOH . E 5 HOH A 111 511 320 HOH HOH . E 5 HOH A 112 512 407 HOH HOH . E 5 HOH A 113 513 335 HOH HOH . E 5 HOH A 114 514 468 HOH HOH . E 5 HOH A 115 515 336 HOH HOH . E 5 HOH A 116 516 331 HOH HOH . E 5 HOH A 117 517 355 HOH HOH . E 5 HOH A 118 518 415 HOH HOH . E 5 HOH A 119 519 385 HOH HOH . E 5 HOH A 120 520 465 HOH HOH . E 5 HOH A 121 521 411 HOH HOH . E 5 HOH A 122 522 388 HOH HOH . E 5 HOH A 123 523 492 HOH HOH . E 5 HOH A 124 524 410 HOH HOH . E 5 HOH A 125 525 386 HOH HOH . E 5 HOH A 126 526 315 HOH HOH . E 5 HOH A 127 527 334 HOH HOH . E 5 HOH A 128 528 419 HOH HOH . E 5 HOH A 129 529 427 HOH HOH . E 5 HOH A 130 530 462 HOH HOH . E 5 HOH A 131 531 370 HOH HOH . E 5 HOH A 132 532 478 HOH HOH . E 5 HOH A 133 533 317 HOH HOH . E 5 HOH A 134 534 454 HOH HOH . E 5 HOH A 135 535 401 HOH HOH . E 5 HOH A 136 536 337 HOH HOH . E 5 HOH A 137 537 384 HOH HOH . E 5 HOH A 138 538 396 HOH HOH . E 5 HOH A 139 539 375 HOH HOH . E 5 HOH A 140 540 371 HOH HOH . E 5 HOH A 141 541 477 HOH HOH . E 5 HOH A 142 542 470 HOH HOH . E 5 HOH A 143 543 453 HOH HOH . E 5 HOH A 144 544 389 HOH HOH . E 5 HOH A 145 545 490 HOH HOH . E 5 HOH A 146 546 445 HOH HOH . E 5 HOH A 147 547 310 HOH HOH . E 5 HOH A 148 548 485 HOH HOH . E 5 HOH A 149 549 479 HOH HOH . E 5 HOH A 150 550 501 HOH HOH . E 5 HOH A 151 551 425 HOH HOH . E 5 HOH A 152 552 353 HOH HOH . E 5 HOH A 153 553 404 HOH HOH . E 5 HOH A 154 554 505 HOH HOH . E 5 HOH A 155 555 325 HOH HOH . E 5 HOH A 156 556 442 HOH HOH . E 5 HOH A 157 557 516 HOH HOH . E 5 HOH A 158 558 428 HOH HOH . E 5 HOH A 159 559 430 HOH HOH . E 5 HOH A 160 560 307 HOH HOH . E 5 HOH A 161 561 429 HOH HOH . E 5 HOH A 162 562 347 HOH HOH . E 5 HOH A 163 563 469 HOH HOH . E 5 HOH A 164 564 359 HOH HOH . E 5 HOH A 165 565 414 HOH HOH . E 5 HOH A 166 566 409 HOH HOH . E 5 HOH A 167 567 521 HOH HOH . E 5 HOH A 168 568 495 HOH HOH . E 5 HOH A 169 569 476 HOH HOH . E 5 HOH A 170 570 498 HOH HOH . E 5 HOH A 171 571 326 HOH HOH . E 5 HOH A 172 572 381 HOH HOH . E 5 HOH A 173 573 372 HOH HOH . E 5 HOH A 174 574 333 HOH HOH . E 5 HOH A 175 575 376 HOH HOH . E 5 HOH A 176 576 514 HOH HOH . E 5 HOH A 177 577 426 HOH HOH . E 5 HOH A 178 578 488 HOH HOH . E 5 HOH A 179 579 520 HOH HOH . E 5 HOH A 180 580 475 HOH HOH . E 5 HOH A 181 581 487 HOH HOH . E 5 HOH A 182 582 393 HOH HOH . E 5 HOH A 183 583 446 HOH HOH . E 5 HOH A 184 584 369 HOH HOH . E 5 HOH A 185 585 367 HOH HOH . E 5 HOH A 186 586 452 HOH HOH . E 5 HOH A 187 587 365 HOH HOH . E 5 HOH A 188 588 507 HOH HOH . E 5 HOH A 189 589 461 HOH HOH . E 5 HOH A 190 590 423 HOH HOH . E 5 HOH A 191 591 437 HOH HOH . E 5 HOH A 192 592 397 HOH HOH . E 5 HOH A 193 593 435 HOH HOH . E 5 HOH A 194 594 346 HOH HOH . E 5 HOH A 195 595 416 HOH HOH . E 5 HOH A 196 596 464 HOH HOH . E 5 HOH A 197 597 503 HOH HOH . E 5 HOH A 198 598 356 HOH HOH . E 5 HOH A 199 599 522 HOH HOH . E 5 HOH A 200 600 473 HOH HOH . E 5 HOH A 201 601 483 HOH HOH . E 5 HOH A 202 602 449 HOH HOH . E 5 HOH A 203 603 436 HOH HOH . E 5 HOH A 204 604 482 HOH HOH . E 5 HOH A 205 605 441 HOH HOH . E 5 HOH A 206 606 387 HOH HOH . E 5 HOH A 207 607 390 HOH HOH . E 5 HOH A 208 608 474 HOH HOH . E 5 HOH A 209 609 524 HOH HOH . E 5 HOH A 210 610 471 HOH HOH . E 5 HOH A 211 611 439 HOH HOH . E 5 HOH A 212 612 497 HOH HOH . E 5 HOH A 213 613 431 HOH HOH . E 5 HOH A 214 614 519 HOH HOH . E 5 HOH A 215 615 458 HOH HOH . E 5 HOH A 216 616 513 HOH HOH . E 5 HOH A 217 617 459 HOH HOH . E 5 HOH A 218 618 358 HOH HOH . E 5 HOH A 219 619 443 HOH HOH . E 5 HOH A 220 620 424 HOH HOH . E 5 HOH A 221 621 517 HOH HOH . E 5 HOH A 222 622 408 HOH HOH . E 5 HOH A 223 623 494 HOH HOH . E 5 HOH A 224 624 502 HOH HOH . E 5 HOH A 225 625 450 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -4.06 -0.211 11.484 1 15.31 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 -2.75 -0.599 11.103 1 16.56 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 -4.512 0.911 10.583 1 18.45 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 -5.312 0.384 9.523 1 15.46 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 -5.278 1.972 11.333 1 20.05 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 -5.166 3.219 10.664 1 16.31 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #