data_6H34 # _model_server_result.job_id exRgjqKXbJfN_aQw68uFEA _model_server_result.datetime_utc '2024-11-29 19:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6H34 # _exptl.entry_id 6H34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.34 _cell.angle_gamma 90 _cell.entry_id 6H34 _cell.length_a 42.32 _cell.length_b 41.34 _cell.length_c 72.11 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 96 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc2 A NE2 HIS 98 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc3 A ND1 HIS 121 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N1 FKK . A FKK 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 177 n n C1 C2 GOL sing 178 n n C1 H11 GOL sing 179 n n C1 H12 GOL sing 180 n n O1 HO1 GOL sing 181 n n C2 O2 GOL sing 182 n n C2 C3 GOL sing 183 n n C2 H2 GOL sing 184 n n O2 HO2 GOL sing 185 n n C3 O3 GOL sing 186 n n C3 H31 GOL sing 187 n n C3 H32 GOL sing 188 n n O3 HO3 GOL sing 189 n n # _atom_sites.entry_id 6H34 _atom_sites.fract_transf_matrix[1][1] 0.023629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006041 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 FKK A 1 302 263 FKK CH7 . D 4 GOL A 1 303 264 GOL GOL . E 5 HOH A 1 401 423 HOH HOH . E 5 HOH A 2 402 469 HOH HOH . E 5 HOH A 3 403 339 HOH HOH . E 5 HOH A 4 404 343 HOH HOH . E 5 HOH A 5 405 399 HOH HOH . E 5 HOH A 6 406 325 HOH HOH . E 5 HOH A 7 407 510 HOH HOH . E 5 HOH A 8 408 479 HOH HOH . E 5 HOH A 9 409 393 HOH HOH . E 5 HOH A 10 410 373 HOH HOH . E 5 HOH A 11 411 473 HOH HOH . E 5 HOH A 12 412 445 HOH HOH . E 5 HOH A 13 413 463 HOH HOH . E 5 HOH A 14 414 497 HOH HOH . E 5 HOH A 15 415 400 HOH HOH . E 5 HOH A 16 416 450 HOH HOH . E 5 HOH A 17 417 495 HOH HOH . E 5 HOH A 18 418 361 HOH HOH . E 5 HOH A 19 419 337 HOH HOH . E 5 HOH A 20 420 317 HOH HOH . E 5 HOH A 21 421 305 HOH HOH . E 5 HOH A 22 422 336 HOH HOH . E 5 HOH A 23 423 316 HOH HOH . E 5 HOH A 24 424 387 HOH HOH . E 5 HOH A 25 425 432 HOH HOH . E 5 HOH A 26 426 301 HOH HOH . E 5 HOH A 27 427 502 HOH HOH . E 5 HOH A 28 428 428 HOH HOH . E 5 HOH A 29 429 330 HOH HOH . E 5 HOH A 30 430 366 HOH HOH . E 5 HOH A 31 431 370 HOH HOH . E 5 HOH A 32 432 349 HOH HOH . E 5 HOH A 33 433 333 HOH HOH . E 5 HOH A 34 434 490 HOH HOH . E 5 HOH A 35 435 304 HOH HOH . E 5 HOH A 36 436 378 HOH HOH . E 5 HOH A 37 437 430 HOH HOH . E 5 HOH A 38 438 488 HOH HOH . E 5 HOH A 39 439 355 HOH HOH . E 5 HOH A 40 440 425 HOH HOH . E 5 HOH A 41 441 411 HOH HOH . E 5 HOH A 42 442 441 HOH HOH . E 5 HOH A 43 443 345 HOH HOH . E 5 HOH A 44 444 348 HOH HOH . E 5 HOH A 45 445 319 HOH HOH . E 5 HOH A 46 446 380 HOH HOH . E 5 HOH A 47 447 321 HOH HOH . E 5 HOH A 48 448 447 HOH HOH . E 5 HOH A 49 449 500 HOH HOH . E 5 HOH A 50 450 326 HOH HOH . E 5 HOH A 51 451 422 HOH HOH . E 5 HOH A 52 452 397 HOH HOH . E 5 HOH A 53 453 357 HOH HOH . E 5 HOH A 54 454 389 HOH HOH . E 5 HOH A 55 455 412 HOH HOH . E 5 HOH A 56 456 303 HOH HOH . E 5 HOH A 57 457 394 HOH HOH . E 5 HOH A 58 458 302 HOH HOH . E 5 HOH A 59 459 444 HOH HOH . E 5 HOH A 60 460 344 HOH HOH . E 5 HOH A 61 461 456 HOH HOH . E 5 HOH A 62 462 382 HOH HOH . E 5 HOH A 63 463 372 HOH HOH . E 5 HOH A 64 464 458 HOH HOH . E 5 HOH A 65 465 413 HOH HOH . E 5 HOH A 66 466 308 HOH HOH . E 5 HOH A 67 467 322 HOH HOH . E 5 HOH A 68 468 523 HOH HOH . E 5 HOH A 69 469 374 HOH HOH . E 5 HOH A 70 470 379 HOH HOH . E 5 HOH A 71 471 318 HOH HOH . E 5 HOH A 72 472 406 HOH HOH . E 5 HOH A 73 473 314 HOH HOH . E 5 HOH A 74 474 320 HOH HOH . E 5 HOH A 75 475 307 HOH HOH . E 5 HOH A 76 476 376 HOH HOH . E 5 HOH A 77 477 440 HOH HOH . E 5 HOH A 78 478 340 HOH HOH . E 5 HOH A 79 479 311 HOH HOH . E 5 HOH A 80 480 420 HOH HOH . E 5 HOH A 81 481 381 HOH HOH . E 5 HOH A 82 482 501 HOH HOH . E 5 HOH A 83 483 454 HOH HOH . E 5 HOH A 84 484 309 HOH HOH . E 5 HOH A 85 485 369 HOH HOH . E 5 HOH A 86 486 474 HOH HOH . E 5 HOH A 87 487 334 HOH HOH . E 5 HOH A 88 488 352 HOH HOH . E 5 HOH A 89 489 315 HOH HOH . E 5 HOH A 90 490 312 HOH HOH . E 5 HOH A 91 491 415 HOH HOH . E 5 HOH A 92 492 306 HOH HOH . E 5 HOH A 93 493 341 HOH HOH . E 5 HOH A 94 494 524 HOH HOH . E 5 HOH A 95 495 442 HOH HOH . E 5 HOH A 96 496 521 HOH HOH . E 5 HOH A 97 497 504 HOH HOH . E 5 HOH A 98 498 364 HOH HOH . E 5 HOH A 99 499 462 HOH HOH . E 5 HOH A 100 500 455 HOH HOH . E 5 HOH A 101 501 362 HOH HOH . E 5 HOH A 102 502 324 HOH HOH . E 5 HOH A 103 503 353 HOH HOH . E 5 HOH A 104 504 449 HOH HOH . E 5 HOH A 105 505 527 HOH HOH . E 5 HOH A 106 506 347 HOH HOH . E 5 HOH A 107 507 395 HOH HOH . E 5 HOH A 108 508 335 HOH HOH . E 5 HOH A 109 509 338 HOH HOH . E 5 HOH A 110 510 367 HOH HOH . E 5 HOH A 111 511 424 HOH HOH . E 5 HOH A 112 512 377 HOH HOH . E 5 HOH A 113 513 414 HOH HOH . E 5 HOH A 114 514 508 HOH HOH . E 5 HOH A 115 515 371 HOH HOH . E 5 HOH A 116 516 492 HOH HOH . E 5 HOH A 117 517 359 HOH HOH . E 5 HOH A 118 518 354 HOH HOH . E 5 HOH A 119 519 391 HOH HOH . E 5 HOH A 120 520 368 HOH HOH . E 5 HOH A 121 521 475 HOH HOH . E 5 HOH A 122 522 327 HOH HOH . E 5 HOH A 123 523 356 HOH HOH . E 5 HOH A 124 524 405 HOH HOH . E 5 HOH A 125 525 385 HOH HOH . E 5 HOH A 126 526 452 HOH HOH . E 5 HOH A 127 527 509 HOH HOH . E 5 HOH A 128 528 529 HOH HOH . E 5 HOH A 129 529 506 HOH HOH . E 5 HOH A 130 530 409 HOH HOH . E 5 HOH A 131 531 446 HOH HOH . E 5 HOH A 132 532 417 HOH HOH . E 5 HOH A 133 533 323 HOH HOH . E 5 HOH A 134 534 310 HOH HOH . E 5 HOH A 135 535 487 HOH HOH . E 5 HOH A 136 536 526 HOH HOH . E 5 HOH A 137 537 396 HOH HOH . E 5 HOH A 138 538 375 HOH HOH . E 5 HOH A 139 539 329 HOH HOH . E 5 HOH A 140 540 498 HOH HOH . E 5 HOH A 141 541 358 HOH HOH . E 5 HOH A 142 542 489 HOH HOH . E 5 HOH A 143 543 507 HOH HOH . E 5 HOH A 144 544 486 HOH HOH . E 5 HOH A 145 545 363 HOH HOH . E 5 HOH A 146 546 398 HOH HOH . E 5 HOH A 147 547 419 HOH HOH . E 5 HOH A 148 548 434 HOH HOH . E 5 HOH A 149 549 342 HOH HOH . E 5 HOH A 150 550 332 HOH HOH . E 5 HOH A 151 551 421 HOH HOH . E 5 HOH A 152 552 459 HOH HOH . E 5 HOH A 153 553 386 HOH HOH . E 5 HOH A 154 554 388 HOH HOH . E 5 HOH A 155 555 346 HOH HOH . E 5 HOH A 156 556 511 HOH HOH . E 5 HOH A 157 557 313 HOH HOH . E 5 HOH A 158 558 466 HOH HOH . E 5 HOH A 159 559 471 HOH HOH . E 5 HOH A 160 560 416 HOH HOH . E 5 HOH A 161 561 384 HOH HOH . E 5 HOH A 162 562 468 HOH HOH . E 5 HOH A 163 563 407 HOH HOH . E 5 HOH A 164 564 476 HOH HOH . E 5 HOH A 165 565 431 HOH HOH . E 5 HOH A 166 566 491 HOH HOH . E 5 HOH A 167 567 496 HOH HOH . E 5 HOH A 168 568 351 HOH HOH . E 5 HOH A 169 569 467 HOH HOH . E 5 HOH A 170 570 512 HOH HOH . E 5 HOH A 171 571 403 HOH HOH . E 5 HOH A 172 572 438 HOH HOH . E 5 HOH A 173 573 470 HOH HOH . E 5 HOH A 174 574 451 HOH HOH . E 5 HOH A 175 575 433 HOH HOH . E 5 HOH A 176 576 448 HOH HOH . E 5 HOH A 177 577 503 HOH HOH . E 5 HOH A 178 578 427 HOH HOH . E 5 HOH A 179 579 408 HOH HOH . E 5 HOH A 180 580 331 HOH HOH . E 5 HOH A 181 581 350 HOH HOH . E 5 HOH A 182 582 460 HOH HOH . E 5 HOH A 183 583 453 HOH HOH . E 5 HOH A 184 584 477 HOH HOH . E 5 HOH A 185 585 365 HOH HOH . E 5 HOH A 186 586 478 HOH HOH . E 5 HOH A 187 587 328 HOH HOH . E 5 HOH A 188 588 360 HOH HOH . E 5 HOH A 189 589 493 HOH HOH . E 5 HOH A 190 590 443 HOH HOH . E 5 HOH A 191 591 481 HOH HOH . E 5 HOH A 192 592 410 HOH HOH . E 5 HOH A 193 593 390 HOH HOH . E 5 HOH A 194 594 480 HOH HOH . E 5 HOH A 195 595 437 HOH HOH . E 5 HOH A 196 596 484 HOH HOH . E 5 HOH A 197 597 505 HOH HOH . E 5 HOH A 198 598 464 HOH HOH . E 5 HOH A 199 599 426 HOH HOH . E 5 HOH A 200 600 528 HOH HOH . E 5 HOH A 201 601 435 HOH HOH . E 5 HOH A 202 602 515 HOH HOH . E 5 HOH A 203 603 418 HOH HOH . E 5 HOH A 204 604 461 HOH HOH . E 5 HOH A 205 605 514 HOH HOH . E 5 HOH A 206 606 401 HOH HOH . E 5 HOH A 207 607 472 HOH HOH . E 5 HOH A 208 608 517 HOH HOH . E 5 HOH A 209 609 519 HOH HOH . E 5 HOH A 210 610 516 HOH HOH . E 5 HOH A 211 611 404 HOH HOH . E 5 HOH A 212 612 522 HOH HOH . E 5 HOH A 213 613 457 HOH HOH . E 5 HOH A 214 614 465 HOH HOH . E 5 HOH A 215 615 392 HOH HOH . E 5 HOH A 216 616 520 HOH HOH . E 5 HOH A 217 617 439 HOH HOH . E 5 HOH A 218 618 483 HOH HOH . E 5 HOH A 219 619 518 HOH HOH . E 5 HOH A 220 620 436 HOH HOH . E 5 HOH A 221 621 499 HOH HOH . E 5 HOH A 222 622 494 HOH HOH . E 5 HOH A 223 623 383 HOH HOH . E 5 HOH A 224 624 402 HOH HOH . E 5 HOH A 225 625 513 HOH HOH . E 5 HOH A 226 626 482 HOH HOH . E 5 HOH A 227 627 525 HOH HOH . E 5 HOH A 228 628 485 HOH HOH . E 5 HOH A 229 629 429 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -4.773 2.008 11.225 1 22.85 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 -5.501 2.948 10.449 1 26.76 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 -5.226 0.596 10.944 1 22.72 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 -5.164 0.347 9.538 1 21.64 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 -4.332 -0.398 11.645 1 20.13 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 -3.068 -0.449 11.002 1 16.94 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #