data_6H35
#
_model_server_result.job_id            wwse3bmgIyMN3kiLL0KTNg 
_model_server_result.datetime_utc      '2024-11-16 04:57:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    6H35 
#
_exptl.entry_id    6H35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H35 
_cell.length_a            88.6 
_cell.length_b            116.65 
_cell.length_c            49.11 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,O 1 1 
B,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 K N N 
#
_chem_comp.formula           'C10 H15 N5 O11 P2' 
_chem_comp.formula_weight    443.201 
_chem_comp.id                GDP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B GDP doub 83 n n 
PB O2B GDP sing 84 n n 
PB O3B GDP sing 85 n n 
PB O3A GDP sing 86 n n 
O2B HOB2 GDP sing 87 n n 
O3B HOB3 GDP sing 88 n n 
O3A PA GDP sing 89 n n 
PA O1A GDP doub 90 n n 
PA O2A GDP sing 91 n n 
PA O5' GDP sing 92 n n 
O2A HOA2 GDP sing 93 n n 
O5' C5' GDP sing 94 n n 
C5' C4' GDP sing 95 n n 
C5' H5' GDP sing 96 n n 
C5' "H5''" GDP sing 97 n n 
C4' O4' GDP sing 98 n n 
C4' C3' GDP sing 99 n n 
C4' H4' GDP sing 100 n n 
O4' C1' GDP sing 101 n n 
C3' O3' GDP sing 102 n n 
C3' C2' GDP sing 103 n n 
C3' H3' GDP sing 104 n n 
O3' HO3' GDP sing 105 n n 
C2' O2' GDP sing 106 n n 
C2' C1' GDP sing 107 n n 
C2' H2' GDP sing 108 n n 
O2' HO2' GDP sing 109 n n 
C1' N9 GDP sing 110 n n 
C1' H1' GDP sing 111 n n 
N9 C8 GDP sing 112 n y 
N9 C4 GDP sing 113 n y 
C8 N7 GDP doub 114 n y 
C8 H8 GDP sing 115 n n 
N7 C5 GDP sing 116 n y 
C5 C6 GDP sing 117 n n 
C5 C4 GDP doub 118 n y 
C6 O6 GDP doub 119 n n 
C6 N1 GDP sing 120 n n 
N1 C2 GDP sing 121 n n 
N1 HN1 GDP sing 122 n n 
C2 N2 GDP sing 123 n n 
C2 N3 GDP doub 124 n n 
N2 HN21 GDP sing 125 n n 
N2 HN22 GDP sing 126 n n 
N3 C4 GDP sing 127 n n 
#
_atom_sites.entry_id                     6H35 
_atom_sites.fract_transf_matrix[1][1]    0.011287 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDP A 1 301 301 GDP GDP . 
D 3 PO4 A 1 302 302 PO4 PO4 . 
E 4 MPD A 1 303 1 MPD MPD . 
F 4 MPD A 1 304 5 MPD MPD . 
G 4 MPD A 1 305 6 MPD MPD . 
H 4 MPD A 1 306 7 MPD MPD . 
I 4 MPD A 1 307 8 MPD MPD . 
J 4 MPD A 1 308 10 MPD MPD . 
K 2 GDP B 1 301 301 GDP GDP . 
L 4 MPD B 1 302 2 MPD MPD . 
M 4 MPD B 1 303 3 MPD MPD . 
N 4 MPD B 1 304 9 MPD MPD . 
O 5 HOH A 1 401 167 HOH HOH . 
O 5 HOH A 2 402 169 HOH HOH . 
O 5 HOH A 3 403 34 HOH HOH . 
O 5 HOH A 4 404 37 HOH HOH . 
O 5 HOH A 5 405 44 HOH HOH . 
O 5 HOH A 6 406 3 HOH HOH . 
O 5 HOH A 7 407 150 HOH HOH . 
O 5 HOH A 8 408 13 HOH HOH . 
O 5 HOH A 9 409 10 HOH HOH . 
O 5 HOH A 10 410 105 HOH HOH . 
O 5 HOH A 11 411 41 HOH HOH . 
O 5 HOH A 12 412 114 HOH HOH . 
O 5 HOH A 13 413 101 HOH HOH . 
O 5 HOH A 14 414 36 HOH HOH . 
O 5 HOH A 15 415 56 HOH HOH . 
O 5 HOH A 16 416 170 HOH HOH . 
O 5 HOH A 17 417 54 HOH HOH . 
O 5 HOH A 18 418 30 HOH HOH . 
O 5 HOH A 19 419 137 HOH HOH . 
O 5 HOH A 20 420 25 HOH HOH . 
O 5 HOH A 21 421 91 HOH HOH . 
O 5 HOH A 22 422 40 HOH HOH . 
O 5 HOH A 23 423 103 HOH HOH . 
O 5 HOH A 24 424 111 HOH HOH . 
O 5 HOH A 25 425 98 HOH HOH . 
O 5 HOH A 26 426 51 HOH HOH . 
O 5 HOH A 27 427 163 HOH HOH . 
O 5 HOH A 28 428 53 HOH HOH . 
O 5 HOH A 29 429 31 HOH HOH . 
O 5 HOH A 30 430 149 HOH HOH . 
O 5 HOH A 31 431 17 HOH HOH . 
O 5 HOH A 32 432 81 HOH HOH . 
O 5 HOH A 33 433 158 HOH HOH . 
O 5 HOH A 34 434 18 HOH HOH . 
O 5 HOH A 35 435 28 HOH HOH . 
O 5 HOH A 36 436 12 HOH HOH . 
O 5 HOH A 37 437 130 HOH HOH . 
O 5 HOH A 38 438 71 HOH HOH . 
O 5 HOH A 39 439 58 HOH HOH . 
O 5 HOH A 40 440 147 HOH HOH . 
O 5 HOH A 41 441 118 HOH HOH . 
O 5 HOH A 42 442 139 HOH HOH . 
O 5 HOH A 43 443 82 HOH HOH . 
O 5 HOH A 44 444 66 HOH HOH . 
O 5 HOH A 45 445 45 HOH HOH . 
O 5 HOH A 46 446 154 HOH HOH . 
O 5 HOH A 47 447 43 HOH HOH . 
O 5 HOH A 48 448 47 HOH HOH . 
O 5 HOH A 49 449 112 HOH HOH . 
O 5 HOH A 50 450 87 HOH HOH . 
O 5 HOH A 51 451 65 HOH HOH . 
O 5 HOH A 52 452 133 HOH HOH . 
O 5 HOH A 53 453 176 HOH HOH . 
O 5 HOH A 54 454 116 HOH HOH . 
O 5 HOH A 55 455 73 HOH HOH . 
O 5 HOH A 56 456 86 HOH HOH . 
O 5 HOH A 57 457 80 HOH HOH . 
O 5 HOH A 58 458 52 HOH HOH . 
O 5 HOH A 59 459 121 HOH HOH . 
O 5 HOH A 60 460 113 HOH HOH . 
O 5 HOH A 61 461 159 HOH HOH . 
O 5 HOH A 62 462 79 HOH HOH . 
O 5 HOH A 63 463 1 HOH HOH . 
O 5 HOH A 64 464 95 HOH HOH . 
O 5 HOH A 65 465 22 HOH HOH . 
O 5 HOH A 66 466 153 HOH HOH . 
O 5 HOH A 67 467 110 HOH HOH . 
O 5 HOH A 68 468 29 HOH HOH . 
O 5 HOH A 69 469 74 HOH HOH . 
O 5 HOH A 70 470 107 HOH HOH . 
O 5 HOH A 71 471 78 HOH HOH . 
O 5 HOH A 72 472 164 HOH HOH . 
O 5 HOH A 73 473 175 HOH HOH . 
O 5 HOH A 74 474 131 HOH HOH . 
O 5 HOH A 75 475 48 HOH HOH . 
O 5 HOH A 76 476 39 HOH HOH . 
O 5 HOH A 77 477 72 HOH HOH . 
O 5 HOH A 78 478 168 HOH HOH . 
O 5 HOH A 79 479 109 HOH HOH . 
O 5 HOH A 80 480 143 HOH HOH . 
O 5 HOH A 81 481 152 HOH HOH . 
O 5 HOH A 82 482 83 HOH HOH . 
O 5 HOH A 83 483 142 HOH HOH . 
P 5 HOH B 1 401 156 HOH HOH . 
P 5 HOH B 2 402 104 HOH HOH . 
P 5 HOH B 3 403 102 HOH HOH . 
P 5 HOH B 4 404 123 HOH HOH . 
P 5 HOH B 5 405 2 HOH HOH . 
P 5 HOH B 6 406 61 HOH HOH . 
P 5 HOH B 7 407 5 HOH HOH . 
P 5 HOH B 8 408 108 HOH HOH . 
P 5 HOH B 9 409 49 HOH HOH . 
P 5 HOH B 10 410 8 HOH HOH . 
P 5 HOH B 11 411 33 HOH HOH . 
P 5 HOH B 12 412 26 HOH HOH . 
P 5 HOH B 13 413 140 HOH HOH . 
P 5 HOH B 14 414 19 HOH HOH . 
P 5 HOH B 15 415 6 HOH HOH . 
P 5 HOH B 16 416 89 HOH HOH . 
P 5 HOH B 17 417 77 HOH HOH . 
P 5 HOH B 18 418 69 HOH HOH . 
P 5 HOH B 19 419 173 HOH HOH . 
P 5 HOH B 20 420 124 HOH HOH . 
P 5 HOH B 21 421 165 HOH HOH . 
P 5 HOH B 22 422 46 HOH HOH . 
P 5 HOH B 23 423 129 HOH HOH . 
P 5 HOH B 24 424 132 HOH HOH . 
P 5 HOH B 25 425 62 HOH HOH . 
P 5 HOH B 26 426 64 HOH HOH . 
P 5 HOH B 27 427 138 HOH HOH . 
P 5 HOH B 28 428 92 HOH HOH . 
P 5 HOH B 29 429 21 HOH HOH . 
P 5 HOH B 30 430 151 HOH HOH . 
P 5 HOH B 31 431 67 HOH HOH . 
P 5 HOH B 32 432 93 HOH HOH . 
P 5 HOH B 33 433 117 HOH HOH . 
P 5 HOH B 34 434 42 HOH HOH . 
P 5 HOH B 35 435 119 HOH HOH . 
P 5 HOH B 36 436 15 HOH HOH . 
P 5 HOH B 37 437 38 HOH HOH . 
P 5 HOH B 38 438 55 HOH HOH . 
P 5 HOH B 39 439 161 HOH HOH . 
P 5 HOH B 40 440 20 HOH HOH . 
P 5 HOH B 41 441 70 HOH HOH . 
P 5 HOH B 42 442 148 HOH HOH . 
P 5 HOH B 43 443 106 HOH HOH . 
P 5 HOH B 44 444 63 HOH HOH . 
P 5 HOH B 45 445 122 HOH HOH . 
P 5 HOH B 46 446 125 HOH HOH . 
P 5 HOH B 47 447 115 HOH HOH . 
P 5 HOH B 48 448 135 HOH HOH . 
P 5 HOH B 49 449 94 HOH HOH . 
P 5 HOH B 50 450 96 HOH HOH . 
P 5 HOH B 51 451 84 HOH HOH . 
P 5 HOH B 52 452 128 HOH HOH . 
P 5 HOH B 53 453 144 HOH HOH . 
P 5 HOH B 54 454 145 HOH HOH . 
P 5 HOH B 55 455 120 HOH HOH . 
P 5 HOH B 56 456 90 HOH HOH . 
P 5 HOH B 57 457 88 HOH HOH . 
P 5 HOH B 58 458 59 HOH HOH . 
P 5 HOH B 59 459 155 HOH HOH . 
P 5 HOH B 60 460 136 HOH HOH . 
P 5 HOH B 61 461 141 HOH HOH . 
P 5 HOH B 62 462 76 HOH HOH . 
P 5 HOH B 63 463 127 HOH HOH . 
P 5 HOH B 64 464 134 HOH HOH . 
P 5 HOH B 65 465 75 HOH HOH . 
P 5 HOH B 66 466 146 HOH HOH . 
P 5 HOH B 67 467 85 HOH HOH . 
P 5 HOH B 68 468 57 HOH HOH . 
P 5 HOH B 69 469 126 HOH HOH . 
P 5 HOH B 70 470 172 HOH HOH . 
P 5 HOH B 71 471 171 HOH HOH . 
P 5 HOH B 72 472 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB GDP . . . C 2 44.485 24.432 70.375 1 25.2 ? PB GDP 301 A 1 
HETATM 2 O O1B GDP . . . C 2 45.079 25.002 69.105 1 25.71 ? O1B GDP 301 A 1 
HETATM 3 O O2B GDP . . . C 2 45.082 23.06 70.551 1 24.41 ? O2B GDP 301 A 1 
HETATM 4 O O3B GDP . . . C 2 42.984 24.353 70.268 1 26.21 ? O3B GDP 301 A 1 
HETATM 5 O O3A GDP . . . C 2 44.891 25.372 71.616 1 26.75 ? O3A GDP 301 A 1 
HETATM 6 P PA GDP . . . C 2 43.849 26.072 72.627 1 25.95 ? PA GDP 301 A 1 
HETATM 7 O O1A GDP . . . C 2 42.841 26.962 71.944 1 26.19 ? O1A GDP 301 A 1 
HETATM 8 O O2A GDP . . . C 2 43.174 25.047 73.498 1 26.37 ? O2A GDP 301 A 1 
HETATM 9 O O5' GDP . . . C 2 44.847 26.953 73.519 1 25.83 ? O5' GDP 301 A 1 
HETATM 10 C C5' GDP . . . C 2 45.816 26.277 74.312 1 25.31 ? C5' GDP 301 A 1 
HETATM 11 C C4' GDP . . . C 2 46.148 27.156 75.501 1 25.24 ? C4' GDP 301 A 1 
HETATM 12 O O4' GDP . . . C 2 46.724 28.377 75.042 1 25.39 ? O4' GDP 301 A 1 
HETATM 13 C C3' GDP . . . C 2 44.883 27.518 76.245 1 25.02 ? C3' GDP 301 A 1 
HETATM 14 O O3' GDP . . . C 2 45.155 27.33 77.63 1 25.7 ? O3' GDP 301 A 1 
HETATM 15 C C2' GDP . . . C 2 44.647 28.986 75.959 1 25.26 ? C2' GDP 301 A 1 
HETATM 16 O O2' GDP . . . C 2 44.127 29.667 77.103 1 25.91 ? O2' GDP 301 A 1 
HETATM 17 C C1' GDP . . . C 2 46.033 29.492 75.608 1 25.55 ? C1' GDP 301 A 1 
HETATM 18 N N9 GDP . . . C 2 45.99 30.587 74.616 1 25.51 ? N9 GDP 301 A 1 
HETATM 19 C C8 GDP . . . C 2 45.397 30.553 73.407 1 25 ? C8 GDP 301 A 1 
HETATM 20 N N7 GDP . . . C 2 45.57 31.73 72.75 1 25.08 ? N7 GDP 301 A 1 
HETATM 21 C C5 GDP . . . C 2 46.307 32.533 73.546 1 25.85 ? C5 GDP 301 A 1 
HETATM 22 C C6 GDP . . . C 2 46.854 33.907 73.472 1 26.65 ? C6 GDP 301 A 1 
HETATM 23 O O6 GDP . . . C 2 46.662 34.623 72.467 1 27.22 ? O6 GDP 301 A 1 
HETATM 24 N N1 GDP . . . C 2 47.556 34.365 74.513 1 27.35 ? N1 GDP 301 A 1 
HETATM 25 C C2 GDP . . . C 2 47.78 33.619 75.612 1 27.77 ? C2 GDP 301 A 1 
HETATM 26 N N2 GDP . . . C 2 48.507 34.156 76.625 1 28.28 ? N2 GDP 301 A 1 
HETATM 27 N N3 GDP . . . C 2 47.308 32.353 75.752 1 27.44 ? N3 GDP 301 A 1 
HETATM 28 C C4 GDP . . . C 2 46.577 31.773 74.773 1 26.24 ? C4 GDP 301 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           28 
#