data_6H3F
#
_model_server_result.job_id            LE6uZSn2xDb9F-dQnQCXLw 
_model_server_result.datetime_utc      '2024-10-14 03:16:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    6H3F 
#
_exptl.entry_id    6H3F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.321 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-4-[[(2~{R})-3-(1~{H}-imidazol-4-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H3F 
_cell.length_a            187.18 
_cell.length_b            49.14 
_cell.length_c            58.71 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 49.14 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H20 N4 O6' 
_chem_comp.formula_weight    328.321 
_chem_comp.id                8UX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-4-[[(2~{R})-3-(1~{H}-imidazol-4-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     staphylopine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAI NAM 8UX sing 1 n y 
CAI CAT 8UX doub 2 n y 
CAL CAT 8UX sing 3 n n 
CAL CAW 8UX sing 4 n n 
NAM CAH 8UX sing 5 n y 
CAT NAP 8UX sing 6 n y 
CAW NAN 8UX sing 7 n n 
CAW CAS 8UX sing 8 n n 
CAH NAP 8UX doub 9 n y 
NAN CAJ 8UX sing 10 n n 
OAD CAS 8UX doub 11 n n 
CAS OAG 8UX sing 12 n n 
CAJ CAK 8UX sing 13 n n 
OAC CAR 8UX doub 14 n n 
CAK CAV 8UX sing 15 n n 
OAF CAR 8UX sing 16 n n 
CAR CAV 8UX sing 17 n n 
CAV N 8UX sing 18 n n 
OXT C 8UX doub 19 n n 
N CA 8UX sing 20 n n 
C CA 8UX sing 21 n n 
C O 8UX sing 22 n n 
CA CB 8UX sing 23 n n 
O H1 8UX sing 24 n n 
CA H2 8UX sing 25 n n 
CB H3 8UX sing 26 n n 
CB H4 8UX sing 27 n n 
CB H5 8UX sing 28 n n 
N H6 8UX sing 29 n n 
CAV H8 8UX sing 30 n n 
OAF H9 8UX sing 31 n n 
CAK H10 8UX sing 32 n n 
CAK H11 8UX sing 33 n n 
CAJ H12 8UX sing 34 n n 
CAJ H13 8UX sing 35 n n 
NAN H14 8UX sing 36 n n 
CAW H16 8UX sing 37 n n 
OAG H17 8UX sing 38 n n 
CAL H18 8UX sing 39 n n 
CAL H19 8UX sing 40 n n 
CAI H20 8UX sing 41 n n 
NAM H21 8UX sing 42 n n 
CAH H22 8UX sing 43 n n 
#
_atom_sites.entry_id                     6H3F 
_atom_sites.fract_transf_matrix[1][1]    0.005342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 600 600 NAP NAP . 
C 3 8UX A 1 601 601 8UX 8UX . 
D 4 GOL A 1 602 602 GOL GOL . 
E 5 PG4 A 1 603 603 PG4 2PE . 
F 6 HOH A 1 701 68 HOH HOH . 
F 6 HOH A 2 702 84 HOH HOH . 
F 6 HOH A 3 703 114 HOH HOH . 
F 6 HOH A 4 704 63 HOH HOH . 
F 6 HOH A 5 705 6 HOH HOH . 
F 6 HOH A 6 706 12 HOH HOH . 
F 6 HOH A 7 707 66 HOH HOH . 
F 6 HOH A 8 708 30 HOH HOH . 
F 6 HOH A 9 709 46 HOH HOH . 
F 6 HOH A 10 710 111 HOH HOH . 
F 6 HOH A 11 711 71 HOH HOH . 
F 6 HOH A 12 712 44 HOH HOH . 
F 6 HOH A 13 713 23 HOH HOH . 
F 6 HOH A 14 714 13 HOH HOH . 
F 6 HOH A 15 715 24 HOH HOH . 
F 6 HOH A 16 716 1 HOH HOH . 
F 6 HOH A 17 717 98 HOH HOH . 
F 6 HOH A 18 718 36 HOH HOH . 
F 6 HOH A 19 719 86 HOH HOH . 
F 6 HOH A 20 720 18 HOH HOH . 
F 6 HOH A 21 721 31 HOH HOH . 
F 6 HOH A 22 722 41 HOH HOH . 
F 6 HOH A 23 723 42 HOH HOH . 
F 6 HOH A 24 724 51 HOH HOH . 
F 6 HOH A 25 725 52 HOH HOH . 
F 6 HOH A 26 726 64 HOH HOH . 
F 6 HOH A 27 727 21 HOH HOH . 
F 6 HOH A 28 728 104 HOH HOH . 
F 6 HOH A 29 729 101 HOH HOH . 
F 6 HOH A 30 730 62 HOH HOH . 
F 6 HOH A 31 731 50 HOH HOH . 
F 6 HOH A 32 732 11 HOH HOH . 
F 6 HOH A 33 733 3 HOH HOH . 
F 6 HOH A 34 734 34 HOH HOH . 
F 6 HOH A 35 735 102 HOH HOH . 
F 6 HOH A 36 736 89 HOH HOH . 
F 6 HOH A 37 737 54 HOH HOH . 
F 6 HOH A 38 738 28 HOH HOH . 
F 6 HOH A 39 739 35 HOH HOH . 
F 6 HOH A 40 740 15 HOH HOH . 
F 6 HOH A 41 741 32 HOH HOH . 
F 6 HOH A 42 742 92 HOH HOH . 
F 6 HOH A 43 743 7 HOH HOH . 
F 6 HOH A 44 744 69 HOH HOH . 
F 6 HOH A 45 745 5 HOH HOH . 
F 6 HOH A 46 746 75 HOH HOH . 
F 6 HOH A 47 747 91 HOH HOH . 
F 6 HOH A 48 748 56 HOH HOH . 
F 6 HOH A 49 749 58 HOH HOH . 
F 6 HOH A 50 750 19 HOH HOH . 
F 6 HOH A 51 751 48 HOH HOH . 
F 6 HOH A 52 752 40 HOH HOH . 
F 6 HOH A 53 753 38 HOH HOH . 
F 6 HOH A 54 754 105 HOH HOH . 
F 6 HOH A 55 755 37 HOH HOH . 
F 6 HOH A 56 756 82 HOH HOH . 
F 6 HOH A 57 757 14 HOH HOH . 
F 6 HOH A 58 758 59 HOH HOH . 
F 6 HOH A 59 759 61 HOH HOH . 
F 6 HOH A 60 760 55 HOH HOH . 
F 6 HOH A 61 761 27 HOH HOH . 
F 6 HOH A 62 762 10 HOH HOH . 
F 6 HOH A 63 763 33 HOH HOH . 
F 6 HOH A 64 764 107 HOH HOH . 
F 6 HOH A 65 765 73 HOH HOH . 
F 6 HOH A 66 766 9 HOH HOH . 
F 6 HOH A 67 767 53 HOH HOH . 
F 6 HOH A 68 768 17 HOH HOH . 
F 6 HOH A 69 769 81 HOH HOH . 
F 6 HOH A 70 770 79 HOH HOH . 
F 6 HOH A 71 771 2 HOH HOH . 
F 6 HOH A 72 772 29 HOH HOH . 
F 6 HOH A 73 773 103 HOH HOH . 
F 6 HOH A 74 774 8 HOH HOH . 
F 6 HOH A 75 775 26 HOH HOH . 
F 6 HOH A 76 776 106 HOH HOH . 
F 6 HOH A 77 777 74 HOH HOH . 
F 6 HOH A 78 778 76 HOH HOH . 
F 6 HOH A 79 779 87 HOH HOH . 
F 6 HOH A 80 780 90 HOH HOH . 
F 6 HOH A 81 781 77 HOH HOH . 
F 6 HOH A 82 782 72 HOH HOH . 
F 6 HOH A 83 783 85 HOH HOH . 
F 6 HOH A 84 784 70 HOH HOH . 
F 6 HOH A 85 785 100 HOH HOH . 
F 6 HOH A 86 786 49 HOH HOH . 
F 6 HOH A 87 787 93 HOH HOH . 
F 6 HOH A 88 788 109 HOH HOH . 
F 6 HOH A 89 789 16 HOH HOH . 
F 6 HOH A 90 790 108 HOH HOH . 
F 6 HOH A 91 791 95 HOH HOH . 
F 6 HOH A 92 792 94 HOH HOH . 
F 6 HOH A 93 793 99 HOH HOH . 
F 6 HOH A 94 794 47 HOH HOH . 
F 6 HOH A 95 795 22 HOH HOH . 
F 6 HOH A 96 796 78 HOH HOH . 
F 6 HOH A 97 797 113 HOH HOH . 
F 6 HOH A 98 798 43 HOH HOH . 
F 6 HOH A 99 799 83 HOH HOH . 
F 6 HOH A 100 800 57 HOH HOH . 
F 6 HOH A 101 801 80 HOH HOH . 
F 6 HOH A 102 802 39 HOH HOH . 
F 6 HOH A 103 803 96 HOH HOH . 
F 6 HOH A 104 804 88 HOH HOH . 
F 6 HOH A 105 805 45 HOH HOH . 
F 6 HOH A 106 806 67 HOH HOH . 
F 6 HOH A 107 807 4 HOH HOH . 
F 6 HOH A 108 808 65 HOH HOH . 
F 6 HOH A 109 809 60 HOH HOH . 
F 6 HOH A 110 810 110 HOH HOH . 
F 6 HOH A 111 811 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O 8UX . . . C 3 -24.648 18.526 -7.755 1 71.31 ? O 8UX 601 A 1 
HETATM 2 C C 8UX . . . C 3 -24.213 18.165 -8.815 1 77.93 ? C 8UX 601 A 1 
HETATM 3 O OXT 8UX . . . C 3 -25.111 18.104 -9.761 1 71.12 ? OXT 8UX 601 A 1 
HETATM 4 C CA 8UX . . . C 3 -22.77 17.774 -9.099 1 103.36 ? CA 8UX 601 A 1 
HETATM 5 C CB 8UX . . . C 3 -21.823 17.981 -7.902 1 97.93 ? CB 8UX 601 A 1 
HETATM 6 N N 8UX . . . C 3 -22.317 18.474 -10.353 1 127.28 ? N 8UX 601 A 1 
HETATM 7 C CAV 8UX . . . C 3 -22.118 19.963 -10.472 1 136.69 ? CAV 8UX 601 A 1 
HETATM 8 C CAR 8UX . . . C 3 -23.222 20.693 -11.226 1 141.72 ? CAR 8UX 601 A 1 
HETATM 9 O OAF 8UX . . . C 3 -23.427 22.006 -11.035 1 136.77 ? OAF 8UX 601 A 1 
HETATM 10 O OAC 8UX . . . C 3 -23.94 20.117 -12.034 1 142.11 ? OAC 8UX 601 A 1 
HETATM 11 C CAK 8UX . . . C 3 -20.785 20.272 -11.176 1 126.26 ? CAK 8UX 601 A 1 
HETATM 12 C CAJ 8UX . . . C 3 -19.715 20.578 -10.146 1 117.56 ? CAJ 8UX 601 A 1 
HETATM 13 N NAN 8UX . . . C 3 -18.447 20.683 -10.889 1 114.57 ? NAN 8UX 601 A 1 
HETATM 14 C CAW 8UX . . . C 3 -17.589 21.806 -10.381 1 110.38 ? CAW 8UX 601 A 1 
HETATM 15 C CAS 8UX . . . C 3 -17.031 21.279 -9.082 1 91.17 ? CAS 8UX 601 A 1 
HETATM 16 O OAG 8UX . . . C 3 -17.319 21.82 -8.021 1 84.49 ? OAG 8UX 601 A 1 
HETATM 17 O OAD 8UX . . . C 3 -16.25 20.209 -9.081 1 68.11 ? OAD 8UX 601 A 1 
HETATM 18 C CAL 8UX . . . C 3 -16.589 22.259 -11.496 1 116.75 ? CAL 8UX 601 A 1 
HETATM 19 C CAT 8UX . . . C 3 -15.263 22.963 -11.093 1 114.97 ? CAT 8UX 601 A 1 
HETATM 20 C CAI 8UX . . . C 3 -14.167 23.238 -11.939 1 104.18 ? CAI 8UX 601 A 1 
HETATM 21 N NAM 8UX . . . C 3 -13.183 23.846 -11.21 1 95.98 ? NAM 8UX 601 A 1 
HETATM 22 C CAH 8UX . . . C 3 -13.647 23.967 -9.936 1 104.71 ? CAH 8UX 601 A 1 
HETATM 23 N NAP 8UX . . . C 3 -14.901 23.437 -9.87 1 110.7 ? NAP 8UX 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#