data_6H3F
#
_model_server_result.job_id            EXx_2myH1xTAfsRi9I4MBg 
_model_server_result.datetime_utc      '2024-11-28 00:21:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    6H3F 
#
_exptl.entry_id    6H3F 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H3F 
_cell.length_a            187.18 
_cell.length_b            49.14 
_cell.length_c            58.71 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 49.14 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 172 n n 
C1 C2 GOL sing 173 n n 
C1 H11 GOL sing 174 n n 
C1 H12 GOL sing 175 n n 
O1 HO1 GOL sing 176 n n 
C2 O2 GOL sing 177 n n 
C2 C3 GOL sing 178 n n 
C2 H2 GOL sing 179 n n 
O2 HO2 GOL sing 180 n n 
C3 O3 GOL sing 181 n n 
C3 H31 GOL sing 182 n n 
C3 H32 GOL sing 183 n n 
O3 HO3 GOL sing 184 n n 
#
_atom_sites.entry_id                     6H3F 
_atom_sites.fract_transf_matrix[1][1]    0.005342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 600 600 NAP NAP . 
C 3 8UX A 1 601 601 8UX 8UX . 
D 4 GOL A 1 602 602 GOL GOL . 
E 5 PG4 A 1 603 603 PG4 2PE . 
F 6 HOH A 1 701 68 HOH HOH . 
F 6 HOH A 2 702 84 HOH HOH . 
F 6 HOH A 3 703 114 HOH HOH . 
F 6 HOH A 4 704 63 HOH HOH . 
F 6 HOH A 5 705 6 HOH HOH . 
F 6 HOH A 6 706 12 HOH HOH . 
F 6 HOH A 7 707 66 HOH HOH . 
F 6 HOH A 8 708 30 HOH HOH . 
F 6 HOH A 9 709 46 HOH HOH . 
F 6 HOH A 10 710 111 HOH HOH . 
F 6 HOH A 11 711 71 HOH HOH . 
F 6 HOH A 12 712 44 HOH HOH . 
F 6 HOH A 13 713 23 HOH HOH . 
F 6 HOH A 14 714 13 HOH HOH . 
F 6 HOH A 15 715 24 HOH HOH . 
F 6 HOH A 16 716 1 HOH HOH . 
F 6 HOH A 17 717 98 HOH HOH . 
F 6 HOH A 18 718 36 HOH HOH . 
F 6 HOH A 19 719 86 HOH HOH . 
F 6 HOH A 20 720 18 HOH HOH . 
F 6 HOH A 21 721 31 HOH HOH . 
F 6 HOH A 22 722 41 HOH HOH . 
F 6 HOH A 23 723 42 HOH HOH . 
F 6 HOH A 24 724 51 HOH HOH . 
F 6 HOH A 25 725 52 HOH HOH . 
F 6 HOH A 26 726 64 HOH HOH . 
F 6 HOH A 27 727 21 HOH HOH . 
F 6 HOH A 28 728 104 HOH HOH . 
F 6 HOH A 29 729 101 HOH HOH . 
F 6 HOH A 30 730 62 HOH HOH . 
F 6 HOH A 31 731 50 HOH HOH . 
F 6 HOH A 32 732 11 HOH HOH . 
F 6 HOH A 33 733 3 HOH HOH . 
F 6 HOH A 34 734 34 HOH HOH . 
F 6 HOH A 35 735 102 HOH HOH . 
F 6 HOH A 36 736 89 HOH HOH . 
F 6 HOH A 37 737 54 HOH HOH . 
F 6 HOH A 38 738 28 HOH HOH . 
F 6 HOH A 39 739 35 HOH HOH . 
F 6 HOH A 40 740 15 HOH HOH . 
F 6 HOH A 41 741 32 HOH HOH . 
F 6 HOH A 42 742 92 HOH HOH . 
F 6 HOH A 43 743 7 HOH HOH . 
F 6 HOH A 44 744 69 HOH HOH . 
F 6 HOH A 45 745 5 HOH HOH . 
F 6 HOH A 46 746 75 HOH HOH . 
F 6 HOH A 47 747 91 HOH HOH . 
F 6 HOH A 48 748 56 HOH HOH . 
F 6 HOH A 49 749 58 HOH HOH . 
F 6 HOH A 50 750 19 HOH HOH . 
F 6 HOH A 51 751 48 HOH HOH . 
F 6 HOH A 52 752 40 HOH HOH . 
F 6 HOH A 53 753 38 HOH HOH . 
F 6 HOH A 54 754 105 HOH HOH . 
F 6 HOH A 55 755 37 HOH HOH . 
F 6 HOH A 56 756 82 HOH HOH . 
F 6 HOH A 57 757 14 HOH HOH . 
F 6 HOH A 58 758 59 HOH HOH . 
F 6 HOH A 59 759 61 HOH HOH . 
F 6 HOH A 60 760 55 HOH HOH . 
F 6 HOH A 61 761 27 HOH HOH . 
F 6 HOH A 62 762 10 HOH HOH . 
F 6 HOH A 63 763 33 HOH HOH . 
F 6 HOH A 64 764 107 HOH HOH . 
F 6 HOH A 65 765 73 HOH HOH . 
F 6 HOH A 66 766 9 HOH HOH . 
F 6 HOH A 67 767 53 HOH HOH . 
F 6 HOH A 68 768 17 HOH HOH . 
F 6 HOH A 69 769 81 HOH HOH . 
F 6 HOH A 70 770 79 HOH HOH . 
F 6 HOH A 71 771 2 HOH HOH . 
F 6 HOH A 72 772 29 HOH HOH . 
F 6 HOH A 73 773 103 HOH HOH . 
F 6 HOH A 74 774 8 HOH HOH . 
F 6 HOH A 75 775 26 HOH HOH . 
F 6 HOH A 76 776 106 HOH HOH . 
F 6 HOH A 77 777 74 HOH HOH . 
F 6 HOH A 78 778 76 HOH HOH . 
F 6 HOH A 79 779 87 HOH HOH . 
F 6 HOH A 80 780 90 HOH HOH . 
F 6 HOH A 81 781 77 HOH HOH . 
F 6 HOH A 82 782 72 HOH HOH . 
F 6 HOH A 83 783 85 HOH HOH . 
F 6 HOH A 84 784 70 HOH HOH . 
F 6 HOH A 85 785 100 HOH HOH . 
F 6 HOH A 86 786 49 HOH HOH . 
F 6 HOH A 87 787 93 HOH HOH . 
F 6 HOH A 88 788 109 HOH HOH . 
F 6 HOH A 89 789 16 HOH HOH . 
F 6 HOH A 90 790 108 HOH HOH . 
F 6 HOH A 91 791 95 HOH HOH . 
F 6 HOH A 92 792 94 HOH HOH . 
F 6 HOH A 93 793 99 HOH HOH . 
F 6 HOH A 94 794 47 HOH HOH . 
F 6 HOH A 95 795 22 HOH HOH . 
F 6 HOH A 96 796 78 HOH HOH . 
F 6 HOH A 97 797 113 HOH HOH . 
F 6 HOH A 98 798 43 HOH HOH . 
F 6 HOH A 99 799 83 HOH HOH . 
F 6 HOH A 100 800 57 HOH HOH . 
F 6 HOH A 101 801 80 HOH HOH . 
F 6 HOH A 102 802 39 HOH HOH . 
F 6 HOH A 103 803 96 HOH HOH . 
F 6 HOH A 104 804 88 HOH HOH . 
F 6 HOH A 105 805 45 HOH HOH . 
F 6 HOH A 106 806 67 HOH HOH . 
F 6 HOH A 107 807 4 HOH HOH . 
F 6 HOH A 108 808 65 HOH HOH . 
F 6 HOH A 109 809 60 HOH HOH . 
F 6 HOH A 110 810 110 HOH HOH . 
F 6 HOH A 111 811 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -9.642 10.999 -3.346 1 54.36 ? C1 GOL 602 A 1 
HETATM 2 O O1 GOL . . . D 4 -9.681 12.089 -4.291 1 61.11 ? O1 GOL 602 A 1 
HETATM 3 C C2 GOL . . . D 4 -9.009 9.853 -4.13 1 57.13 ? C2 GOL 602 A 1 
HETATM 4 O O2 GOL . . . D 4 -7.702 9.644 -3.598 1 53.63 ? O2 GOL 602 A 1 
HETATM 5 C C3 GOL . . . D 4 -9.881 8.59 -4.115 1 61.28 ? C3 GOL 602 A 1 
HETATM 6 O O3 GOL . . . D 4 -9.196 7.414 -4.598 1 62.68 ? O3 GOL 602 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           712 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#