data_6H53 # _model_server_result.job_id 0LS6Af5MhL7dcZCUuO9x8A _model_server_result.datetime_utc '2024-11-21 14:32:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 6H53 # _exptl.entry_id 6H53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.92 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H53 _cell.length_a 69.726 _cell.length_b 72.896 _cell.length_c 102.452 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C34 H70' _chem_comp.formula_weight 478.92 _chem_comp.id UPL _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'UNKNOWN PHOSPHOLIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UPL sing 344 n n C1 H11 UPL sing 345 n n C1 H12 UPL sing 346 n n C1 H13 UPL sing 347 n n C2 C3 UPL sing 348 n n C2 H21 UPL sing 349 n n C2 H22 UPL sing 350 n n C3 C4 UPL sing 351 n n C3 H31 UPL sing 352 n n C3 H32 UPL sing 353 n n C4 C5 UPL sing 354 n n C4 H41 UPL sing 355 n n C4 H42 UPL sing 356 n n C5 C6 UPL sing 357 n n C5 H51 UPL sing 358 n n C5 H52 UPL sing 359 n n C6 C7 UPL sing 360 n n C6 H61 UPL sing 361 n n C6 H62 UPL sing 362 n n C7 C8 UPL sing 363 n n C7 H71 UPL sing 364 n n C7 H72 UPL sing 365 n n C8 C9 UPL sing 366 n n C8 H81 UPL sing 367 n n C8 H82 UPL sing 368 n n C9 C10 UPL sing 369 n n C9 H91 UPL sing 370 n n C9 H92 UPL sing 371 n n C10 C11 UPL sing 372 n n C10 H101 UPL sing 373 n n C10 H102 UPL sing 374 n n C11 C12 UPL sing 375 n n C11 H111 UPL sing 376 n n C11 H112 UPL sing 377 n n C12 C13 UPL sing 378 n n C12 C26 UPL sing 379 n n C12 H121 UPL sing 380 n n C13 C14 UPL sing 381 n n C13 H131 UPL sing 382 n n C13 H132 UPL sing 383 n n C14 C15 UPL sing 384 n n C14 H141 UPL sing 385 n n C14 H142 UPL sing 386 n n C15 C16 UPL sing 387 n n C15 H151 UPL sing 388 n n C15 H152 UPL sing 389 n n C16 C17 UPL sing 390 n n C16 H161 UPL sing 391 n n C16 H162 UPL sing 392 n n C17 C18 UPL sing 393 n n C17 H171 UPL sing 394 n n C17 H172 UPL sing 395 n n C18 C19 UPL sing 396 n n C18 H181 UPL sing 397 n n C18 H182 UPL sing 398 n n C19 C20 UPL sing 399 n n C19 H191 UPL sing 400 n n C19 H192 UPL sing 401 n n C20 C21 UPL sing 402 n n C20 H201 UPL sing 403 n n C20 H202 UPL sing 404 n n C21 C22 UPL sing 405 n n C21 H211 UPL sing 406 n n C21 H212 UPL sing 407 n n C22 C23 UPL sing 408 n n C22 H221 UPL sing 409 n n C22 H222 UPL sing 410 n n C23 C24 UPL sing 411 n n C23 H231 UPL sing 412 n n C23 H232 UPL sing 413 n n C24 C25 UPL sing 414 n n C24 H241 UPL sing 415 n n C24 H242 UPL sing 416 n n C25 H251 UPL sing 417 n n C25 H252 UPL sing 418 n n C25 H253 UPL sing 419 n n C26 C27 UPL sing 420 n n C26 H261 UPL sing 421 n n C26 H262 UPL sing 422 n n C27 C28 UPL sing 423 n n C27 H271 UPL sing 424 n n C27 H272 UPL sing 425 n n C28 C29 UPL sing 426 n n C28 H281 UPL sing 427 n n C28 H282 UPL sing 428 n n C29 C30 UPL sing 429 n n C29 H291 UPL sing 430 n n C29 H292 UPL sing 431 n n C30 C31 UPL sing 432 n n C30 H301 UPL sing 433 n n C30 H302 UPL sing 434 n n C31 C32 UPL sing 435 n n C31 H311 UPL sing 436 n n C31 H312 UPL sing 437 n n C32 C33 UPL sing 438 n n C32 H321 UPL sing 439 n n C32 H322 UPL sing 440 n n C33 C34 UPL sing 441 n n C33 H331 UPL sing 442 n n C33 H332 UPL sing 443 n n C34 H341 UPL sing 444 n n C34 H342 UPL sing 445 n n C34 H343 UPL sing 446 n n # _atom_sites.entry_id 6H53 _atom_sites.fract_transf_matrix[1][1] 0.014342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 210 SO4 SO4 . D 3 UPL A 1 302 211 UPL 13C . E 3 UPL A 1 303 212 UPL 13C . F 3 UPL A 1 304 213 UPL 14C . G 3 UPL A 1 305 214 UPL 14C . H 2 SO4 A 1 306 211 SO4 SO4 . I 2 SO4 B 1 301 210 SO4 SO4 . J 3 UPL B 1 302 212 UPL 14C . K 3 UPL B 1 303 213 UPL 14C . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UPL . . . J 3 -31.668 5.321 -1.228 1 39.42 ? C1 UPL 302 B 1 HETATM 2 C C2 UPL . . . J 3 -30.986 4.518 -0.132 1 48.62 ? C2 UPL 302 B 1 HETATM 3 C C3 UPL . . . J 3 -29.948 5.349 0.591 1 41.01 ? C3 UPL 302 B 1 HETATM 4 C C4 UPL . . . J 3 -29.633 4.928 2.025 1 39.64 ? C4 UPL 302 B 1 HETATM 5 C C5 UPL . . . J 3 -30.354 5.768 3.057 1 29.27 ? C5 UPL 302 B 1 HETATM 6 C C6 UPL . . . J 3 -29.734 5.622 4.421 1 36.52 ? C6 UPL 302 B 1 HETATM 7 C C7 UPL . . . J 3 -30.071 4.325 5.121 1 42.91 ? C7 UPL 302 B 1 HETATM 8 C C8 UPL . . . J 3 -31.057 4.487 6.26 1 44.25 ? C8 UPL 302 B 1 HETATM 9 C C9 UPL . . . J 3 -30.819 3.471 7.361 1 46.16 ? C9 UPL 302 B 1 HETATM 10 C C10 UPL . . . J 3 -32.018 3.317 8.285 1 40.41 ? C10 UPL 302 B 1 HETATM 11 C C11 UPL . . . J 3 -31.911 4.082 9.587 1 47.08 ? C11 UPL 302 B 1 HETATM 12 C C12 UPL . . . J 3 -32.619 3.389 10.735 1 45.21 ? C12 UPL 302 B 1 HETATM 13 C C13 UPL . . . J 3 -32.853 4.314 11.9 1 48.69 ? C13 UPL 302 B 1 HETATM 14 C C14 UPL . . . J 3 -33.435 3.576 13.08 1 42.16 ? C14 UPL 302 B 1 HETATM 15 H H11 UPL . . . J 3 -32.301 4.751 -1.703 1 48.69 ? H11 UPL 302 B 1 HETATM 16 H H12 UPL . . . J 3 -32.144 6.075 -0.83 1 48.69 ? H12 UPL 302 B 1 HETATM 17 H H13 UPL . . . J 3 -30.996 5.654 -1.853 1 48.69 ? H13 UPL 302 B 1 HETATM 18 H H21 UPL . . . J 3 -30.552 3.74 -0.53 1 59.72 ? H21 UPL 302 B 1 HETATM 19 H H22 UPL . . . J 3 -31.658 4.218 0.509 1 59.72 ? H22 UPL 302 B 1 HETATM 20 H H31 UPL . . . J 3 -29.12 5.315 0.076 1 50.59 ? H31 UPL 302 B 1 HETATM 21 H H32 UPL . . . J 3 -30.258 6.275 0.608 1 50.59 ? H32 UPL 302 B 1 HETATM 22 H H41 UPL . . . J 3 -28.671 5.008 2.171 1 48.95 ? H41 UPL 302 B 1 HETATM 23 H H42 UPL . . . J 3 -29.893 3.995 2.142 1 48.95 ? H42 UPL 302 B 1 HETATM 24 H H51 UPL . . . J 3 -30.316 6.705 2.788 1 36.5 ? H51 UPL 302 B 1 HETATM 25 H H52 UPL . . . J 3 -31.288 5.486 3.1 1 36.5 ? H52 UPL 302 B 1 HETATM 26 H H61 UPL . . . J 3 -28.764 5.681 4.328 1 45.2 ? H61 UPL 302 B 1 HETATM 27 H H62 UPL . . . J 3 -30.037 6.363 4.979 1 45.2 ? H62 UPL 302 B 1 HETATM 28 H H71 UPL . . . J 3 -29.248 3.939 5.474 1 52.87 ? H71 UPL 302 B 1 HETATM 29 H H72 UPL . . . J 3 -30.45 3.708 4.466 1 52.87 ? H72 UPL 302 B 1 HETATM 30 H H81 UPL . . . J 3 -31.963 4.374 5.915 1 54.49 ? H81 UPL 302 B 1 HETATM 31 H H82 UPL . . . J 3 -30.968 5.385 6.632 1 54.49 ? H82 UPL 302 B 1 HETATM 32 H H91 UPL . . . J 3 -30.049 3.754 7.89 1 56.78 ? H91 UPL 302 B 1 HETATM 33 H H101 UPL . . . J 3 -32.129 2.37 8.491 1 49.88 ? H101 UPL 302 B 1 HETATM 34 H H102 UPL . . . J 3 -32.814 3.626 7.811 1 49.88 ? H102 UPL 302 B 1 HETATM 35 H H111 UPL . . . J 3 -32.302 4.967 9.465 1 57.88 ? H111 UPL 302 B 1 HETATM 36 H H112 UPL . . . J 3 -30.967 4.183 9.815 1 57.88 ? H112 UPL 302 B 1 HETATM 37 H H121 UPL . . . J 3 -32.075 2.636 11.033 1 55.64 ? H121 UPL 302 B 1 HETATM 38 H H131 UPL . . . J 3 -33.471 5.019 11.629 1 59.82 ? H131 UPL 302 B 1 HETATM 39 H H132 UPL . . . J 3 -32.004 4.717 12.163 1 59.82 ? H132 UPL 302 B 1 HETATM 40 H H141 UPL . . . J 3 -34.307 3.21 12.837 1 51.97 ? H141 UPL 302 B 1 HETATM 41 H H142 UPL . . . J 3 -32.837 2.849 13.337 1 51.97 ? H142 UPL 302 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 542 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #