data_6H54
#
_model_server_result.job_id            ic4gjyXlq0RvNT7HVaoHoA 
_model_server_result.datetime_utc      '2025-07-16 03:56:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    6H54 
#
_exptl.entry_id    6H54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.801 
_cell.angle_gamma         90 
_cell.entry_id            6H54 
_cell.length_a            66.19 
_cell.length_b            49.34 
_cell.length_c            86.96 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 227 n n 
C1 C2 GOL sing 228 n n 
C1 H11 GOL sing 229 n n 
C1 H12 GOL sing 230 n n 
O1 HO1 GOL sing 231 n n 
C2 O2 GOL sing 232 n n 
C2 C3 GOL sing 233 n n 
C2 H2 GOL sing 234 n n 
O2 HO2 GOL sing 235 n n 
C3 O3 GOL sing 236 n n 
C3 H31 GOL sing 237 n n 
C3 H32 GOL sing 238 n n 
O3 HO3 GOL sing 239 n n 
#
_atom_sites.entry_id                     6H54 
_atom_sites.fract_transf_matrix[1][1]    0.015108 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00261 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020268 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TMO A 1 601 601 TMO TMO . 
C 3 3FD A 1 602 602 3FD 3FD . 
D 4 EPE A 1 603 603 EPE EPE . 
E 5 GOL A 1 604 604 GOL GOL . 
F 6 HOH A 1 701 704 HOH HOH . 
F 6 HOH A 2 702 791 HOH HOH . 
F 6 HOH A 3 703 712 HOH HOH . 
F 6 HOH A 4 704 703 HOH HOH . 
F 6 HOH A 5 705 713 HOH HOH . 
F 6 HOH A 6 706 844 HOH HOH . 
F 6 HOH A 7 707 702 HOH HOH . 
F 6 HOH A 8 708 701 HOH HOH . 
F 6 HOH A 9 709 721 HOH HOH . 
F 6 HOH A 10 710 728 HOH HOH . 
F 6 HOH A 11 711 749 HOH HOH . 
F 6 HOH A 12 712 732 HOH HOH . 
F 6 HOH A 13 713 718 HOH HOH . 
F 6 HOH A 14 714 753 HOH HOH . 
F 6 HOH A 15 715 711 HOH HOH . 
F 6 HOH A 16 716 717 HOH HOH . 
F 6 HOH A 17 717 706 HOH HOH . 
F 6 HOH A 18 718 778 HOH HOH . 
F 6 HOH A 19 719 719 HOH HOH . 
F 6 HOH A 20 720 715 HOH HOH . 
F 6 HOH A 21 721 710 HOH HOH . 
F 6 HOH A 22 722 799 HOH HOH . 
F 6 HOH A 23 723 809 HOH HOH . 
F 6 HOH A 24 724 737 HOH HOH . 
F 6 HOH A 25 725 739 HOH HOH . 
F 6 HOH A 26 726 742 HOH HOH . 
F 6 HOH A 27 727 722 HOH HOH . 
F 6 HOH A 28 728 745 HOH HOH . 
F 6 HOH A 29 729 756 HOH HOH . 
F 6 HOH A 30 730 770 HOH HOH . 
F 6 HOH A 31 731 736 HOH HOH . 
F 6 HOH A 32 732 767 HOH HOH . 
F 6 HOH A 33 733 733 HOH HOH . 
F 6 HOH A 34 734 747 HOH HOH . 
F 6 HOH A 35 735 741 HOH HOH . 
F 6 HOH A 36 736 714 HOH HOH . 
F 6 HOH A 37 737 708 HOH HOH . 
F 6 HOH A 38 738 705 HOH HOH . 
F 6 HOH A 39 739 720 HOH HOH . 
F 6 HOH A 40 740 707 HOH HOH . 
F 6 HOH A 41 741 929 HOH HOH . 
F 6 HOH A 42 742 781 HOH HOH . 
F 6 HOH A 43 743 709 HOH HOH . 
F 6 HOH A 44 744 784 HOH HOH . 
F 6 HOH A 45 745 730 HOH HOH . 
F 6 HOH A 46 746 757 HOH HOH . 
F 6 HOH A 47 747 724 HOH HOH . 
F 6 HOH A 48 748 716 HOH HOH . 
F 6 HOH A 49 749 725 HOH HOH . 
F 6 HOH A 50 750 729 HOH HOH . 
F 6 HOH A 51 751 726 HOH HOH . 
F 6 HOH A 52 752 772 HOH HOH . 
F 6 HOH A 53 753 825 HOH HOH . 
F 6 HOH A 54 754 786 HOH HOH . 
F 6 HOH A 55 755 788 HOH HOH . 
F 6 HOH A 56 756 891 HOH HOH . 
F 6 HOH A 57 757 734 HOH HOH . 
F 6 HOH A 58 758 752 HOH HOH . 
F 6 HOH A 59 759 785 HOH HOH . 
F 6 HOH A 60 760 761 HOH HOH . 
F 6 HOH A 61 761 750 HOH HOH . 
F 6 HOH A 62 762 771 HOH HOH . 
F 6 HOH A 63 763 816 HOH HOH . 
F 6 HOH A 64 764 735 HOH HOH . 
F 6 HOH A 65 765 823 HOH HOH . 
F 6 HOH A 66 766 804 HOH HOH . 
F 6 HOH A 67 767 776 HOH HOH . 
F 6 HOH A 68 768 760 HOH HOH . 
F 6 HOH A 69 769 848 HOH HOH . 
F 6 HOH A 70 770 777 HOH HOH . 
F 6 HOH A 71 771 758 HOH HOH . 
F 6 HOH A 72 772 740 HOH HOH . 
F 6 HOH A 73 773 867 HOH HOH . 
F 6 HOH A 74 774 806 HOH HOH . 
F 6 HOH A 75 775 793 HOH HOH . 
F 6 HOH A 76 776 763 HOH HOH . 
F 6 HOH A 77 777 766 HOH HOH . 
F 6 HOH A 78 778 731 HOH HOH . 
F 6 HOH A 79 779 780 HOH HOH . 
F 6 HOH A 80 780 874 HOH HOH . 
F 6 HOH A 81 781 819 HOH HOH . 
F 6 HOH A 82 782 807 HOH HOH . 
F 6 HOH A 83 783 723 HOH HOH . 
F 6 HOH A 84 784 774 HOH HOH . 
F 6 HOH A 85 785 887 HOH HOH . 
F 6 HOH A 86 786 841 HOH HOH . 
F 6 HOH A 87 787 782 HOH HOH . 
F 6 HOH A 88 788 820 HOH HOH . 
F 6 HOH A 89 789 812 HOH HOH . 
F 6 HOH A 90 790 783 HOH HOH . 
F 6 HOH A 91 791 792 HOH HOH . 
F 6 HOH A 92 792 773 HOH HOH . 
F 6 HOH A 93 793 839 HOH HOH . 
F 6 HOH A 94 794 817 HOH HOH . 
F 6 HOH A 95 795 748 HOH HOH . 
F 6 HOH A 96 796 779 HOH HOH . 
F 6 HOH A 97 797 810 HOH HOH . 
F 6 HOH A 98 798 768 HOH HOH . 
F 6 HOH A 99 799 849 HOH HOH . 
F 6 HOH A 100 800 855 HOH HOH . 
F 6 HOH A 101 801 830 HOH HOH . 
F 6 HOH A 102 802 738 HOH HOH . 
F 6 HOH A 103 803 845 HOH HOH . 
F 6 HOH A 104 804 803 HOH HOH . 
F 6 HOH A 105 805 794 HOH HOH . 
F 6 HOH A 106 806 822 HOH HOH . 
F 6 HOH A 107 807 797 HOH HOH . 
F 6 HOH A 108 808 828 HOH HOH . 
F 6 HOH A 109 809 775 HOH HOH . 
F 6 HOH A 110 810 821 HOH HOH . 
F 6 HOH A 111 811 743 HOH HOH . 
F 6 HOH A 112 812 835 HOH HOH . 
F 6 HOH A 113 813 759 HOH HOH . 
F 6 HOH A 114 814 928 HOH HOH . 
F 6 HOH A 115 815 805 HOH HOH . 
F 6 HOH A 116 816 746 HOH HOH . 
F 6 HOH A 117 817 842 HOH HOH . 
F 6 HOH A 118 818 764 HOH HOH . 
F 6 HOH A 119 819 826 HOH HOH . 
F 6 HOH A 120 820 858 HOH HOH . 
F 6 HOH A 121 821 840 HOH HOH . 
F 6 HOH A 122 822 795 HOH HOH . 
F 6 HOH A 123 823 787 HOH HOH . 
F 6 HOH A 124 824 893 HOH HOH . 
F 6 HOH A 125 825 888 HOH HOH . 
F 6 HOH A 126 826 829 HOH HOH . 
F 6 HOH A 127 827 727 HOH HOH . 
F 6 HOH A 128 828 818 HOH HOH . 
F 6 HOH A 129 829 856 HOH HOH . 
F 6 HOH A 130 830 847 HOH HOH . 
F 6 HOH A 131 831 859 HOH HOH . 
F 6 HOH A 132 832 765 HOH HOH . 
F 6 HOH A 133 833 796 HOH HOH . 
F 6 HOH A 134 834 869 HOH HOH . 
F 6 HOH A 135 835 877 HOH HOH . 
F 6 HOH A 136 836 876 HOH HOH . 
F 6 HOH A 137 837 846 HOH HOH . 
F 6 HOH A 138 838 827 HOH HOH . 
F 6 HOH A 139 839 836 HOH HOH . 
F 6 HOH A 140 840 879 HOH HOH . 
F 6 HOH A 141 841 831 HOH HOH . 
F 6 HOH A 142 842 851 HOH HOH . 
F 6 HOH A 143 843 860 HOH HOH . 
F 6 HOH A 144 844 843 HOH HOH . 
F 6 HOH A 145 845 790 HOH HOH . 
F 6 HOH A 146 846 857 HOH HOH . 
F 6 HOH A 147 847 798 HOH HOH . 
F 6 HOH A 148 848 850 HOH HOH . 
F 6 HOH A 149 849 833 HOH HOH . 
F 6 HOH A 150 850 852 HOH HOH . 
F 6 HOH A 151 851 889 HOH HOH . 
F 6 HOH A 152 852 832 HOH HOH . 
F 6 HOH A 153 853 744 HOH HOH . 
F 6 HOH A 154 854 814 HOH HOH . 
F 6 HOH A 155 855 864 HOH HOH . 
F 6 HOH A 156 856 909 HOH HOH . 
F 6 HOH A 157 857 895 HOH HOH . 
F 6 HOH A 158 858 863 HOH HOH . 
F 6 HOH A 159 859 837 HOH HOH . 
F 6 HOH A 160 860 903 HOH HOH . 
F 6 HOH A 161 861 834 HOH HOH . 
F 6 HOH A 162 862 854 HOH HOH . 
F 6 HOH A 163 863 811 HOH HOH . 
F 6 HOH A 164 864 769 HOH HOH . 
F 6 HOH A 165 865 824 HOH HOH . 
F 6 HOH A 166 866 800 HOH HOH . 
F 6 HOH A 167 867 813 HOH HOH . 
F 6 HOH A 168 868 905 HOH HOH . 
F 6 HOH A 169 869 870 HOH HOH . 
F 6 HOH A 170 870 881 HOH HOH . 
F 6 HOH A 171 871 890 HOH HOH . 
F 6 HOH A 172 872 853 HOH HOH . 
F 6 HOH A 173 873 880 HOH HOH . 
F 6 HOH A 174 874 884 HOH HOH . 
F 6 HOH A 175 875 838 HOH HOH . 
F 6 HOH A 176 876 904 HOH HOH . 
F 6 HOH A 177 877 808 HOH HOH . 
F 6 HOH A 178 878 751 HOH HOH . 
F 6 HOH A 179 879 754 HOH HOH . 
F 6 HOH A 180 880 865 HOH HOH . 
F 6 HOH A 181 881 802 HOH HOH . 
F 6 HOH A 182 882 762 HOH HOH . 
F 6 HOH A 183 883 801 HOH HOH . 
F 6 HOH A 184 884 882 HOH HOH . 
F 6 HOH A 185 885 878 HOH HOH . 
F 6 HOH A 186 886 789 HOH HOH . 
F 6 HOH A 187 887 862 HOH HOH . 
F 6 HOH A 188 888 868 HOH HOH . 
F 6 HOH A 189 889 873 HOH HOH . 
F 6 HOH A 190 890 899 HOH HOH . 
F 6 HOH A 191 891 883 HOH HOH . 
F 6 HOH A 192 892 894 HOH HOH . 
F 6 HOH A 193 893 875 HOH HOH . 
F 6 HOH A 194 894 861 HOH HOH . 
F 6 HOH A 195 895 886 HOH HOH . 
F 6 HOH A 196 896 815 HOH HOH . 
F 6 HOH A 197 897 892 HOH HOH . 
F 6 HOH A 198 898 866 HOH HOH . 
F 6 HOH A 199 899 872 HOH HOH . 
F 6 HOH A 200 900 896 HOH HOH . 
F 6 HOH A 201 901 897 HOH HOH . 
F 6 HOH A 202 902 932 HOH HOH . 
F 6 HOH A 203 903 901 HOH HOH . 
F 6 HOH A 204 904 933 HOH HOH . 
F 6 HOH A 205 905 900 HOH HOH . 
F 6 HOH A 206 906 898 HOH HOH . 
F 6 HOH A 207 907 908 HOH HOH . 
F 6 HOH A 208 908 916 HOH HOH . 
F 6 HOH A 209 909 755 HOH HOH . 
F 6 HOH A 210 910 912 HOH HOH . 
F 6 HOH A 211 911 885 HOH HOH . 
F 6 HOH A 212 912 917 HOH HOH . 
F 6 HOH A 213 913 918 HOH HOH . 
F 6 HOH A 214 914 915 HOH HOH . 
F 6 HOH A 215 915 911 HOH HOH . 
F 6 HOH A 216 916 913 HOH HOH . 
F 6 HOH A 217 917 930 HOH HOH . 
F 6 HOH A 218 918 910 HOH HOH . 
F 6 HOH A 219 919 920 HOH HOH . 
F 6 HOH A 220 920 931 HOH HOH . 
F 6 HOH A 221 921 934 HOH HOH . 
F 6 HOH A 222 922 914 HOH HOH . 
F 6 HOH A 223 923 919 HOH HOH . 
F 6 HOH A 224 924 923 HOH HOH . 
F 6 HOH A 225 925 922 HOH HOH . 
F 6 HOH A 226 926 925 HOH HOH . 
F 6 HOH A 227 927 924 HOH HOH . 
F 6 HOH A 228 928 927 HOH HOH . 
F 6 HOH A 229 929 926 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 -15.218 -18.661 -19.123 1 53.13 ? C1 GOL 604 A 1 
HETATM 2 O O1 GOL . . . E 5 -14.906 -17.97 -17.953 1 49.66 ? O1 GOL 604 A 1 
HETATM 3 C C2 GOL . . . E 5 -16.483 -19.499 -18.831 1 56.21 ? C2 GOL 604 A 1 
HETATM 4 O O2 GOL . . . E 5 -17.422 -18.775 -18.116 1 61.75 ? O2 GOL 604 A 1 
HETATM 5 C C3 GOL . . . E 5 -17.011 -19.92 -20.225 1 56.28 ? C3 GOL 604 A 1 
HETATM 6 O O3 GOL . . . E 5 -15.906 -20.344 -20.959 1 61.69 ? O3 GOL 604 A 1 
#
_model_server_stats.io_time_ms              126 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#