data_6H5B # _model_server_result.job_id psP0nERw1-zMJc-UYyBIVA _model_server_result.datetime_utc '2024-11-16 06:51:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 6H5B # _exptl.entry_id 6H5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6H5B _cell.length_a 135.101 _cell.length_b 135.101 _cell.length_c 60.382 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,M 1 1 B,I,J,N 2 1 C,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 25 A LYS 25 1_555 D O2B GSP . A GSP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? metalc ? metalc1 A OG1 THR 26 A THR 26 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 A OG1 THR 54 A THR 54 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 D O2G GSP . A GSP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 D O1B GSP . A GSP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # _atom_sites.entry_id 6H5B _atom_sites.fract_transf_matrix[1][1] 0.007402 _atom_sites.fract_transf_matrix[1][2] 0.004273 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GSP A 1 301 301 GSP GSP . E 4 MG A 1 302 302 MG MG . F 5 EPE A 1 303 303 EPE EPE . G 5 EPE A 1 304 304 EPE EPE . H 6 1PE A 1 305 305 1PE 1PE . I 7 PEG B 1 201 201 PEG PEG . J 7 PEG B 1 202 201 PEG PEG . K 6 1PE C 1 201 306 1PE 1PE . L 7 PEG C 1 202 202 PEG PEG . M 8 HOH A 1 401 415 HOH HOH . M 8 HOH A 2 402 416 HOH HOH . M 8 HOH A 3 403 401 HOH HOH . M 8 HOH A 4 404 405 HOH HOH . M 8 HOH A 5 405 409 HOH HOH . M 8 HOH A 6 406 404 HOH HOH . M 8 HOH A 7 407 414 HOH HOH . M 8 HOH A 8 408 407 HOH HOH . M 8 HOH A 9 409 406 HOH HOH . N 8 HOH B 1 301 412 HOH HOH . N 8 HOH B 2 302 411 HOH HOH . N 8 HOH B 3 303 408 HOH HOH . O 8 HOH C 1 301 413 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 5 -40.079 2.487 26.473 1 121.75 ? N1 EPE 303 A 1 HETATM 2 C C2 EPE . . . F 5 -38.782 2.255 25.805 1 110.63 ? C2 EPE 303 A 1 HETATM 3 C C3 EPE . . . F 5 -37.801 1.549 26.734 1 104.27 ? C3 EPE 303 A 1 HETATM 4 N N4 EPE . . . F 5 -37.588 2.328 27.937 1 107.43 ? N4 EPE 303 A 1 HETATM 5 C C5 EPE . . . F 5 -38.564 3.362 28.19 1 107.29 ? C5 EPE 303 A 1 HETATM 6 C C6 EPE . . . F 5 -39.948 2.803 27.907 1 118.04 ? C6 EPE 303 A 1 HETATM 7 C C7 EPE . . . F 5 -36.981 1.677 29.077 1 110.19 ? C7 EPE 303 A 1 HETATM 8 C C8 EPE . . . F 5 -38.02 0.888 29.861 1 111.69 ? C8 EPE 303 A 1 HETATM 9 O O8 EPE . . . F 5 -37.368 0.062 30.793 1 115.4 ? O8 EPE 303 A 1 HETATM 10 C C9 EPE . . . F 5 -40.769 3.597 25.805 1 150.56 ? C9 EPE 303 A 1 HETATM 11 C C10 EPE . . . F 5 -42.236 3.239 25.604 1 172.75 ? C10 EPE 303 A 1 HETATM 12 S S EPE . . . F 5 -43.227 4.705 25.219 1 196.4 ? S EPE 303 A 1 HETATM 13 O O1S EPE . . . F 5 -44.638 4.404 25.443 1 198.56 ? O1S EPE 303 A 1 HETATM 14 O O2S EPE . . . F 5 -43.014 5.078 23.821 1 200.48 ? O2S EPE 303 A 1 HETATM 15 O O3S EPE . . . F 5 -42.83 5.811 26.087 1 201.4 ? O3S EPE 303 A 1 HETATM 16 H H21 EPE . . . F 5 -38.938 1.647 24.913 1 135.22 ? H21 EPE 303 A 1 HETATM 17 H H22 EPE . . . F 5 -38.361 3.21 25.49 1 135.22 ? H22 EPE 303 A 1 HETATM 18 H H31 EPE . . . F 5 -36.851 1.405 26.22 1 127.58 ? H31 EPE 303 A 1 HETATM 19 H H32 EPE . . . F 5 -38.191 0.567 26.999 1 127.58 ? H32 EPE 303 A 1 HETATM 20 H H51 EPE . . . F 5 -38.498 3.693 29.226 1 131.21 ? H51 EPE 303 A 1 HETATM 21 H H52 EPE . . . F 5 -38.371 4.224 27.551 1 131.21 ? H52 EPE 303 A 1 HETATM 22 H H61 EPE . . . F 5 -40.11 1.902 28.499 1 144.11 ? H61 EPE 303 A 1 HETATM 23 H H62 EPE . . . F 5 -40.706 3.532 28.194 1 144.11 ? H62 EPE 303 A 1 HETATM 24 H H71 EPE . . . F 5 -36.193 1.005 28.738 1 134.69 ? H71 EPE 303 A 1 HETATM 25 H H72 EPE . . . F 5 -36.526 2.426 29.726 1 134.69 ? H72 EPE 303 A 1 HETATM 26 H H81 EPE . . . F 5 -38.693 1.572 30.378 1 136.49 ? H81 EPE 303 A 1 HETATM 27 H H82 EPE . . . F 5 -38.617 0.282 29.18 1 136.49 ? H82 EPE 303 A 1 HETATM 28 H HO8 EPE . . . F 5 -36.4 0.111 30.652 1 140.94 ? HO8 EPE 303 A 1 HETATM 29 H H91 EPE . . . F 5 -40.689 4.5 26.41 1 183.14 ? H91 EPE 303 A 1 HETATM 30 H H92 EPE . . . F 5 -40.302 3.796 24.841 1 183.14 ? H92 EPE 303 A 1 HETATM 31 H H101 EPE . . . F 5 -42.324 2.519 24.79 1 209.77 ? H101 EPE 303 A 1 HETATM 32 H H102 EPE . . . F 5 -42.621 2.771 26.509 1 209.77 ? H102 EPE 303 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #