data_6H5O # _model_server_result.job_id Nzj0U_Xqc9hiRyFven6wXw _model_server_result.datetime_utc '2024-11-26 21:57:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6H5O # _exptl.entry_id 6H5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.571 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'Piperacillin (Open Form)' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H5O _cell.length_a 80.713 _cell.length_b 105.014 _cell.length_c 185.624 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,N 1 1 B,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 377 A SER 403 1_555 C C01 JPP . A JPP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale2 B OG SER 377 B SER 403 1_555 L C01 JPP . B JPP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? metalc ? metalc1 A O GLY 109 A GLY 135 1_555 D CD CD . A CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A ND1 HIS 117 A HIS 143 1_555 F CD CD . A CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A OE1 GLU 119 A GLU 145 1_555 F CD CD . A CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc4 A OE2 GLU 119 A GLU 145 1_555 H CD CD . A CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc5 A OE2 GLU 119 A GLU 145 1_555 J CD CD . A CD 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? metalc ? metalc6 A OD2 ASP 183 A ASP 209 1_555 K CD CD . A CD 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc7 A NE2 HIS 285 A HIS 311 1_555 D CD CD . A CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc8 D CD CD . A CD 702 1_555 B OD1 ASP 183 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc9 F CD CD . A CD 704 1_555 B OE1 GLU 119 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc10 J CD CD . A CD 708 1_555 B ND1 HIS 117 B HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc11 J CD CD . A CD 708 1_555 B OE2 GLU 119 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 J CD CD . A CD 708 1_555 O O HOH . B HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc13 K CD CD . A CD 709 1_555 B O GLY 109 B GLY 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C23 H29 N5 O7 S' _chem_comp.formula_weight 519.571 _chem_comp.id JPP _chem_comp.mon_nstd_flag . _chem_comp.name 'Piperacillin (Open Form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C04 JPP doub 160 n n O01 C01 JPP doub 161 n n O02 C04 JPP sing 162 n n C04 C18 JPP sing 163 n n O04 C06 JPP doub 164 n n C01 C20 JPP sing 165 n n C18 N02 JPP sing 166 n n C18 C19 JPP sing 167 n n C07 C12 JPP doub 168 n y C07 C05 JPP sing 169 n y C12 C16 JPP sing 170 n y C09 C10 JPP sing 171 n n C09 N01 JPP sing 172 n n C03 C19 JPP sing 173 n n N02 C17 JPP sing 174 n n N03 C20 JPP sing 175 n n N03 C21 JPP sing 176 n n C06 N01 JPP sing 177 n n C06 N04 JPP sing 178 n n C10 N JPP sing 179 n n CA C05 JPP sing 180 n n CA C21 JPP sing 181 n n CA N04 JPP sing 182 n n C19 C02 JPP sing 183 n n C19 S JPP sing 184 n n C20 C17 JPP sing 185 n n C05 C08 JPP doub 186 n y N01 C11 JPP sing 187 n n C16 C13 JPP doub 188 n y C21 O06 JPP doub 189 n n C17 S JPP sing 190 n n C08 C13 JPP sing 191 n y N C15 JPP sing 192 n n N C14 JPP sing 193 n n C11 O05 JPP doub 194 n n C11 C14 JPP sing 195 n n C C15 JPP sing 196 n n C14 O JPP doub 197 n n O02 H1 JPP sing 198 n n N02 H2 JPP sing 199 n n N03 H4 JPP sing 200 n n N04 H5 JPP sing 201 n n C17 H6 JPP sing 202 n n C18 H7 JPP sing 203 n n C20 H8 JPP sing 204 n n C01 H9 JPP sing 205 n n C02 H10 JPP sing 206 n n C02 H11 JPP sing 207 n n C02 H12 JPP sing 208 n n C03 H13 JPP sing 209 n n C03 H14 JPP sing 210 n n C03 H15 JPP sing 211 n n CA H16 JPP sing 212 n n C07 H17 JPP sing 213 n n C08 H18 JPP sing 214 n n C09 H19 JPP sing 215 n n C09 H20 JPP sing 216 n n C10 H21 JPP sing 217 n n C10 H22 JPP sing 218 n n C12 H23 JPP sing 219 n n C13 H24 JPP sing 220 n n C15 H25 JPP sing 221 n n C15 H26 JPP sing 222 n n C16 H27 JPP sing 223 n n C H28 JPP sing 224 n n C H29 JPP sing 225 n n C H30 JPP sing 226 n n # _atom_sites.entry_id 6H5O _atom_sites.fract_transf_matrix[1][1] 0.01239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JPP A 1 701 800 JPP PA4 . D 3 CD A 1 702 1 CD CD . E 3 CD A 1 703 2 CD CD . F 3 CD A 1 704 5 CD CD . G 3 CD A 1 705 6 CD CD . H 3 CD A 1 706 8 CD CD . I 3 CD A 1 707 9 CD CD . J 3 CD A 1 708 7 CD CD . K 3 CD A 1 709 10 CD CD . L 2 JPP B 1 701 800 JPP PA4 . M 3 CD B 1 702 11 CD CD . N 4 HOH A 1 801 43 HOH HOH . N 4 HOH A 2 802 7 HOH HOH . N 4 HOH A 3 803 136 HOH HOH . N 4 HOH A 4 804 67 HOH HOH . N 4 HOH A 5 805 17 HOH HOH . N 4 HOH A 6 806 119 HOH HOH . N 4 HOH A 7 807 108 HOH HOH . N 4 HOH A 8 808 103 HOH HOH . N 4 HOH A 9 809 148 HOH HOH . N 4 HOH A 10 810 94 HOH HOH . N 4 HOH A 11 811 68 HOH HOH . N 4 HOH A 12 812 72 HOH HOH . N 4 HOH A 13 813 144 HOH HOH . N 4 HOH A 14 814 115 HOH HOH . N 4 HOH A 15 815 66 HOH HOH . N 4 HOH A 16 816 16 HOH HOH . N 4 HOH A 17 817 14 HOH HOH . N 4 HOH A 18 818 106 HOH HOH . N 4 HOH A 19 819 21 HOH HOH . N 4 HOH A 20 820 18 HOH HOH . N 4 HOH A 21 821 91 HOH HOH . N 4 HOH A 22 822 15 HOH HOH . N 4 HOH A 23 823 9 HOH HOH . N 4 HOH A 24 824 37 HOH HOH . N 4 HOH A 25 825 137 HOH HOH . N 4 HOH A 26 826 110 HOH HOH . N 4 HOH A 27 827 30 HOH HOH . N 4 HOH A 28 828 114 HOH HOH . N 4 HOH A 29 829 90 HOH HOH . N 4 HOH A 30 830 4 HOH HOH . N 4 HOH A 31 831 10 HOH HOH . N 4 HOH A 32 832 12 HOH HOH . N 4 HOH A 33 833 112 HOH HOH . N 4 HOH A 34 834 20 HOH HOH . N 4 HOH A 35 835 107 HOH HOH . N 4 HOH A 36 836 29 HOH HOH . N 4 HOH A 37 837 13 HOH HOH . N 4 HOH A 38 838 133 HOH HOH . N 4 HOH A 39 839 70 HOH HOH . N 4 HOH A 40 840 48 HOH HOH . N 4 HOH A 41 841 74 HOH HOH . N 4 HOH A 42 842 44 HOH HOH . N 4 HOH A 43 843 22 HOH HOH . N 4 HOH A 44 844 135 HOH HOH . N 4 HOH A 45 845 71 HOH HOH . N 4 HOH A 46 846 26 HOH HOH . N 4 HOH A 47 847 27 HOH HOH . N 4 HOH A 48 848 113 HOH HOH . N 4 HOH A 49 849 42 HOH HOH . N 4 HOH A 50 850 36 HOH HOH . N 4 HOH A 51 851 73 HOH HOH . N 4 HOH A 52 852 23 HOH HOH . N 4 HOH A 53 853 79 HOH HOH . N 4 HOH A 54 854 69 HOH HOH . N 4 HOH A 55 855 25 HOH HOH . N 4 HOH A 56 856 92 HOH HOH . N 4 HOH A 57 857 64 HOH HOH . O 4 HOH B 1 801 53 HOH HOH . O 4 HOH B 2 802 130 HOH HOH . O 4 HOH B 3 803 81 HOH HOH . O 4 HOH B 4 804 117 HOH HOH . O 4 HOH B 5 805 143 HOH HOH . O 4 HOH B 6 806 97 HOH HOH . O 4 HOH B 7 807 100 HOH HOH . O 4 HOH B 8 808 95 HOH HOH . O 4 HOH B 9 809 138 HOH HOH . O 4 HOH B 10 810 76 HOH HOH . O 4 HOH B 11 811 123 HOH HOH . O 4 HOH B 12 812 104 HOH HOH . O 4 HOH B 13 813 109 HOH HOH . O 4 HOH B 14 814 145 HOH HOH . O 4 HOH B 15 815 116 HOH HOH . O 4 HOH B 16 816 51 HOH HOH . O 4 HOH B 17 817 124 HOH HOH . O 4 HOH B 18 818 142 HOH HOH . O 4 HOH B 19 819 32 HOH HOH . O 4 HOH B 20 820 28 HOH HOH . O 4 HOH B 21 821 141 HOH HOH . O 4 HOH B 22 822 147 HOH HOH . O 4 HOH B 23 823 87 HOH HOH . O 4 HOH B 24 824 102 HOH HOH . O 4 HOH B 25 825 122 HOH HOH . O 4 HOH B 26 826 82 HOH HOH . O 4 HOH B 27 827 31 HOH HOH . O 4 HOH B 28 828 47 HOH HOH . O 4 HOH B 29 829 99 HOH HOH . O 4 HOH B 30 830 77 HOH HOH . O 4 HOH B 31 831 96 HOH HOH . O 4 HOH B 32 832 98 HOH HOH . O 4 HOH B 33 833 125 HOH HOH . O 4 HOH B 34 834 140 HOH HOH . O 4 HOH B 35 835 6 HOH HOH . O 4 HOH B 36 836 128 HOH HOH . O 4 HOH B 37 837 84 HOH HOH . O 4 HOH B 38 838 126 HOH HOH . O 4 HOH B 39 839 139 HOH HOH . O 4 HOH B 40 840 35 HOH HOH . O 4 HOH B 41 841 54 HOH HOH . O 4 HOH B 42 842 33 HOH HOH . O 4 HOH B 43 843 85 HOH HOH . O 4 HOH B 44 844 62 HOH HOH . O 4 HOH B 45 845 134 HOH HOH . O 4 HOH B 46 846 146 HOH HOH . O 4 HOH B 47 847 149 HOH HOH . O 4 HOH B 48 848 121 HOH HOH . O 4 HOH B 49 849 120 HOH HOH . O 4 HOH B 50 850 24 HOH HOH . O 4 HOH B 51 851 118 HOH HOH . O 4 HOH B 52 852 78 HOH HOH . O 4 HOH B 53 853 132 HOH HOH . O 4 HOH B 54 854 89 HOH HOH . O 4 HOH B 55 855 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S JPP . . . C 2 36.148 -3.813 22.266 1 142.7 ? S JPP 701 A 1 HETATM 2 O O01 JPP . . . C 2 32.182 -1.692 24.018 1 127.94 ? O01 JPP 701 A 1 HETATM 3 O O02 JPP . . . C 2 32.666 -7.05 22.655 1 146.69 ? O02 JPP 701 A 1 HETATM 4 O O03 JPP . . . C 2 33.836 -7.686 24.286 1 138.63 -1 O03 JPP 701 A 1 HETATM 5 O O06 JPP . . . C 2 36.207 -0.355 22.412 1 115.94 ? O06 JPP 701 A 1 HETATM 6 O O04 JPP . . . C 2 37.765 0.392 27.073 1 146.61 ? O04 JPP 701 A 1 HETATM 7 O O05 JPP . . . C 2 37.446 3.193 23.828 1 117.52 ? O05 JPP 701 A 1 HETATM 8 O O JPP . . . C 2 38.224 5.807 24.302 1 122.78 ? O JPP 701 A 1 HETATM 9 N N02 JPP . . . C 2 33.557 -4.598 22.345 1 130.42 ? N02 JPP 701 A 1 HETATM 10 N N03 JPP . . . C 2 34.767 -1.727 23.816 1 135.25 ? N03 JPP 701 A 1 HETATM 11 N N04 JPP . . . C 2 37.089 0.831 24.838 1 121.96 ? N04 JPP 701 A 1 HETATM 12 N N01 JPP . . . C 2 38.119 2.606 26.118 1 135.35 ? N01 JPP 701 A 1 HETATM 13 N N JPP . . . C 2 39.217 4.972 26.443 1 155.68 ? N JPP 701 A 1 HETATM 14 C C17 JPP . . . C 2 34.39 -3.425 21.981 1 139.09 ? C17 JPP 701 A 1 HETATM 15 C C19 JPP . . . C 2 35.611 -5.515 22.477 1 140.58 ? C19 JPP 701 A 1 HETATM 16 C C18 JPP . . . C 2 34.298 -5.508 23.274 1 133.97 ? C18 JPP 701 A 1 HETATM 17 C C20 JPP . . . C 2 34.014 -2.049 22.598 1 137.62 ? C20 JPP 701 A 1 HETATM 18 C C01 JPP . . . C 2 32.571 -2.186 22.999 1 128.65 ? C01 JPP 701 A 1 HETATM 19 C C02 JPP . . . C 2 36.552 -6.243 23.45 1 139.08 ? C02 JPP 701 A 1 HETATM 20 C C03 JPP . . . C 2 35.643 -6.086 21.031 1 142.19 ? C03 JPP 701 A 1 HETATM 21 C C04 JPP . . . C 2 33.555 -6.845 23.434 1 140.33 ? C04 JPP 701 A 1 HETATM 22 C C21 JPP . . . C 2 35.832 -0.873 23.691 1 126.6 ? C21 JPP 701 A 1 HETATM 23 C CA JPP . . . C 2 36.644 -0.56 24.939 1 126.67 ? CA JPP 701 A 1 HETATM 24 C C05 JPP . . . C 2 37.778 -1.613 25.046 1 133.79 ? C05 JPP 701 A 1 HETATM 25 C C06 JPP . . . C 2 37.657 1.317 25.992 1 129.21 ? C06 JPP 701 A 1 HETATM 26 C C07 JPP . . . C 2 37.431 -2.979 25.098 1 136.2 ? C07 JPP 701 A 1 HETATM 27 C C08 JPP . . . C 2 39.149 -1.245 25.133 1 146.86 ? C08 JPP 701 A 1 HETATM 28 C C09 JPP . . . C 2 38.699 2.934 27.334 1 153.27 ? C09 JPP 701 A 1 HETATM 29 C C10 JPP . . . C 2 39.501 4.084 27.4 1 156.33 ? C10 JPP 701 A 1 HETATM 30 C C11 JPP . . . C 2 38.023 3.525 25.088 1 127.9 ? C11 JPP 701 A 1 HETATM 31 C C12 JPP . . . C 2 38.436 -3.96 25.211 1 141.3 ? C12 JPP 701 A 1 HETATM 32 C C13 JPP . . . C 2 40.145 -2.229 25.237 1 152.97 ? C13 JPP 701 A 1 HETATM 33 C C14 JPP . . . C 2 38.521 4.824 25.299 1 137.85 ? C14 JPP 701 A 1 HETATM 34 C C15 JPP . . . C 2 39.741 6.349 26.658 1 151.31 ? C15 JPP 701 A 1 HETATM 35 C C16 JPP . . . C 2 39.787 -3.587 25.283 1 153.88 ? C16 JPP 701 A 1 HETATM 36 C C JPP . . . C 2 40.636 6.591 27.907 1 137.41 ? C JPP 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 36 #