data_6H5T # _model_server_result.job_id Lx0EPs2RlZ5H0-BWgrAnSg _model_server_result.datetime_utc '2024-11-25 23:15:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 6H5T # _exptl.entry_id 6H5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H5T _cell.length_a 86.792 _cell.length_b 86.792 _cell.length_c 141.768 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 3 A HIS 739 1_555 E ZN ZN . A ZN 903 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A NE2 HIS 20 A HIS 756 1_555 F ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 A OD2 ASP 21 A ASP 757 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 A OD2 ASP 34 A ASP 770 1_555 E ZN ZN . A ZN 903 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc5 A OE2 GLU 35 A GLU 771 1_555 E ZN ZN . A ZN 903 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc6 A OE2 GLU 47 A GLU 783 1_555 F ZN ZN . A ZN 904 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc7 F ZN ZN . A ZN 904 3_655 B NE2 HIS 20 B HIS 756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc8 F ZN ZN . A ZN 904 1_555 B OE1 GLU 47 B GLU 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc9 B ND1 HIS 3 B HIS 739 1_555 I ZN ZN . B ZN 903 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc10 B OD2 ASP 21 B ASP 757 1_555 I ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc11 B OD2 ASP 34 B ASP 770 1_555 I ZN ZN . B ZN 903 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc12 B OE2 GLU 35 B GLU 771 1_555 I ZN ZN . B ZN 903 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? # _chem_comp.formula 'C17 H36 O9' _chem_comp.formula_weight 384.462 _chem_comp.id 7PG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C1 7PG sing 1 n n OXT HOXT 7PG sing 2 n n C1 C2 7PG sing 3 n n C1 H11 7PG sing 4 n n C1 H12 7PG sing 5 n n C2 O1 7PG sing 6 n n C2 H21 7PG sing 7 n n C2 H22 7PG sing 8 n n O1 C3 7PG sing 9 n n C3 C4 7PG sing 10 n n C3 H31 7PG sing 11 n n C3 H32 7PG sing 12 n n C4 O2 7PG sing 13 n n C4 H41 7PG sing 14 n n C4 H42 7PG sing 15 n n O2 C5 7PG sing 16 n n C5 C6 7PG sing 17 n n C5 H51 7PG sing 18 n n C5 H52 7PG sing 19 n n C6 O3 7PG sing 20 n n C6 H61 7PG sing 21 n n C6 H62 7PG sing 22 n n O3 C7 7PG sing 23 n n C7 C8 7PG sing 24 n n C7 H71 7PG sing 25 n n C7 H72 7PG sing 26 n n C8 O4 7PG sing 27 n n C8 H81 7PG sing 28 n n C8 H82 7PG sing 29 n n O4 C9 7PG sing 30 n n C9 C10 7PG sing 31 n n C9 H91 7PG sing 32 n n C9 H92 7PG sing 33 n n C10 O5 7PG sing 34 n n C10 H101 7PG sing 35 n n C10 H102 7PG sing 36 n n O5 C11 7PG sing 37 n n C11 C12 7PG sing 38 n n C11 H111 7PG sing 39 n n C11 H112 7PG sing 40 n n C12 O6 7PG sing 41 n n C12 H121 7PG sing 42 n n C12 H122 7PG sing 43 n n O6 C13 7PG sing 44 n n C13 C14 7PG sing 45 n n C13 H131 7PG sing 46 n n C13 H132 7PG sing 47 n n C14 O7 7PG sing 48 n n C14 H141 7PG sing 49 n n C14 H142 7PG sing 50 n n O7 C15 7PG sing 51 n n C15 C16 7PG sing 52 n n C15 H151 7PG sing 53 n n C15 H152 7PG sing 54 n n C16 O8 7PG sing 55 n n C16 H161 7PG sing 56 n n C16 H162 7PG sing 57 n n O8 C17 7PG sing 58 n n C17 H171 7PG sing 59 n n C17 H172 7PG sing 60 n n C17 H173 7PG sing 61 n n # _atom_sites.entry_id 6H5T _atom_sites.fract_transf_matrix[1][1] 0.011522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7PG A 1 901 2 7PG 7PG . D 3 CL A 1 902 1 CL CL . E 4 ZN A 1 903 3 ZN ZN . F 4 ZN A 1 904 4 ZN ZN . G 2 7PG B 1 901 1 7PG 7PG . H 5 ACT B 1 902 1 ACT ACT . I 4 ZN B 1 903 2 ZN ZN . J 6 HOH A 1 1001 25 HOH HOH . J 6 HOH A 2 1002 70 HOH HOH . J 6 HOH A 3 1003 88 HOH HOH . J 6 HOH A 4 1004 116 HOH HOH . J 6 HOH A 5 1005 69 HOH HOH . J 6 HOH A 6 1006 175 HOH HOH . J 6 HOH A 7 1007 10 HOH HOH . J 6 HOH A 8 1008 193 HOH HOH . J 6 HOH A 9 1009 53 HOH HOH . J 6 HOH A 10 1010 79 HOH HOH . J 6 HOH A 11 1011 68 HOH HOH . J 6 HOH A 12 1012 71 HOH HOH . J 6 HOH A 13 1013 120 HOH HOH . J 6 HOH A 14 1014 54 HOH HOH . J 6 HOH A 15 1015 51 HOH HOH . J 6 HOH A 16 1016 112 HOH HOH . J 6 HOH A 17 1017 135 HOH HOH . J 6 HOH A 18 1018 58 HOH HOH . J 6 HOH A 19 1019 180 HOH HOH . J 6 HOH A 20 1020 36 HOH HOH . J 6 HOH A 21 1021 50 HOH HOH . J 6 HOH A 22 1022 124 HOH HOH . J 6 HOH A 23 1023 73 HOH HOH . J 6 HOH A 24 1024 59 HOH HOH . J 6 HOH A 25 1025 52 HOH HOH . J 6 HOH A 26 1026 23 HOH HOH . J 6 HOH A 27 1027 157 HOH HOH . J 6 HOH A 28 1028 111 HOH HOH . J 6 HOH A 29 1029 126 HOH HOH . J 6 HOH A 30 1030 16 HOH HOH . J 6 HOH A 31 1031 159 HOH HOH . J 6 HOH A 32 1032 19 HOH HOH . J 6 HOH A 33 1033 13 HOH HOH . J 6 HOH A 34 1034 32 HOH HOH . J 6 HOH A 35 1035 66 HOH HOH . J 6 HOH A 36 1036 134 HOH HOH . J 6 HOH A 37 1037 47 HOH HOH . J 6 HOH A 38 1038 27 HOH HOH . J 6 HOH A 39 1039 62 HOH HOH . J 6 HOH A 40 1040 165 HOH HOH . J 6 HOH A 41 1041 67 HOH HOH . J 6 HOH A 42 1042 192 HOH HOH . J 6 HOH A 43 1043 191 HOH HOH . J 6 HOH A 44 1044 29 HOH HOH . J 6 HOH A 45 1045 114 HOH HOH . J 6 HOH A 46 1046 87 HOH HOH . J 6 HOH A 47 1047 24 HOH HOH . J 6 HOH A 48 1048 21 HOH HOH . J 6 HOH A 49 1049 103 HOH HOH . J 6 HOH A 50 1050 113 HOH HOH . J 6 HOH A 51 1051 74 HOH HOH . J 6 HOH A 52 1052 96 HOH HOH . J 6 HOH A 53 1053 33 HOH HOH . J 6 HOH A 54 1054 91 HOH HOH . J 6 HOH A 55 1055 182 HOH HOH . J 6 HOH A 56 1056 48 HOH HOH . J 6 HOH A 57 1057 12 HOH HOH . J 6 HOH A 58 1058 18 HOH HOH . J 6 HOH A 59 1059 108 HOH HOH . J 6 HOH A 60 1060 39 HOH HOH . J 6 HOH A 61 1061 171 HOH HOH . J 6 HOH A 62 1062 123 HOH HOH . J 6 HOH A 63 1063 179 HOH HOH . J 6 HOH A 64 1064 164 HOH HOH . J 6 HOH A 65 1065 148 HOH HOH . J 6 HOH A 66 1066 178 HOH HOH . J 6 HOH A 67 1067 136 HOH HOH . J 6 HOH A 68 1068 170 HOH HOH . J 6 HOH A 69 1069 173 HOH HOH . J 6 HOH A 70 1070 132 HOH HOH . J 6 HOH A 71 1071 145 HOH HOH . J 6 HOH A 72 1072 26 HOH HOH . J 6 HOH A 73 1073 146 HOH HOH . J 6 HOH A 74 1074 131 HOH HOH . J 6 HOH A 75 1075 150 HOH HOH . J 6 HOH A 76 1076 181 HOH HOH . J 6 HOH A 77 1077 95 HOH HOH . J 6 HOH A 78 1078 100 HOH HOH . J 6 HOH A 79 1079 125 HOH HOH . J 6 HOH A 80 1080 190 HOH HOH . K 6 HOH B 1 1001 104 HOH HOH . K 6 HOH B 2 1002 61 HOH HOH . K 6 HOH B 3 1003 105 HOH HOH . K 6 HOH B 4 1004 118 HOH HOH . K 6 HOH B 5 1005 155 HOH HOH . K 6 HOH B 6 1006 92 HOH HOH . K 6 HOH B 7 1007 109 HOH HOH . K 6 HOH B 8 1008 156 HOH HOH . K 6 HOH B 9 1009 121 HOH HOH . K 6 HOH B 10 1010 43 HOH HOH . K 6 HOH B 11 1011 162 HOH HOH . K 6 HOH B 12 1012 89 HOH HOH . K 6 HOH B 13 1013 196 HOH HOH . K 6 HOH B 14 1014 144 HOH HOH . K 6 HOH B 15 1015 9 HOH HOH . K 6 HOH B 16 1016 75 HOH HOH . K 6 HOH B 17 1017 81 HOH HOH . K 6 HOH B 18 1018 45 HOH HOH . K 6 HOH B 19 1019 20 HOH HOH . K 6 HOH B 20 1020 110 HOH HOH . K 6 HOH B 21 1021 14 HOH HOH . K 6 HOH B 22 1022 194 HOH HOH . K 6 HOH B 23 1023 35 HOH HOH . K 6 HOH B 24 1024 22 HOH HOH . K 6 HOH B 25 1025 90 HOH HOH . K 6 HOH B 26 1026 142 HOH HOH . K 6 HOH B 27 1027 3 HOH HOH . K 6 HOH B 28 1028 143 HOH HOH . K 6 HOH B 29 1029 8 HOH HOH . K 6 HOH B 30 1030 42 HOH HOH . K 6 HOH B 31 1031 7 HOH HOH . K 6 HOH B 32 1032 28 HOH HOH . K 6 HOH B 33 1033 40 HOH HOH . K 6 HOH B 34 1034 44 HOH HOH . K 6 HOH B 35 1035 55 HOH HOH . K 6 HOH B 36 1036 5 HOH HOH . K 6 HOH B 37 1037 154 HOH HOH . K 6 HOH B 38 1038 78 HOH HOH . K 6 HOH B 39 1039 6 HOH HOH . K 6 HOH B 40 1040 80 HOH HOH . K 6 HOH B 41 1041 34 HOH HOH . K 6 HOH B 42 1042 117 HOH HOH . K 6 HOH B 43 1043 41 HOH HOH . K 6 HOH B 44 1044 115 HOH HOH . K 6 HOH B 45 1045 11 HOH HOH . K 6 HOH B 46 1046 72 HOH HOH . K 6 HOH B 47 1047 94 HOH HOH . K 6 HOH B 48 1048 64 HOH HOH . K 6 HOH B 49 1049 98 HOH HOH . K 6 HOH B 50 1050 46 HOH HOH . K 6 HOH B 51 1051 4 HOH HOH . K 6 HOH B 52 1052 139 HOH HOH . K 6 HOH B 53 1053 2 HOH HOH . K 6 HOH B 54 1054 17 HOH HOH . K 6 HOH B 55 1055 102 HOH HOH . K 6 HOH B 56 1056 60 HOH HOH . K 6 HOH B 57 1057 57 HOH HOH . K 6 HOH B 58 1058 149 HOH HOH . K 6 HOH B 59 1059 167 HOH HOH . K 6 HOH B 60 1060 65 HOH HOH . K 6 HOH B 61 1061 99 HOH HOH . K 6 HOH B 62 1062 31 HOH HOH . K 6 HOH B 63 1063 163 HOH HOH . K 6 HOH B 64 1064 37 HOH HOH . K 6 HOH B 65 1065 97 HOH HOH . K 6 HOH B 66 1066 101 HOH HOH . K 6 HOH B 67 1067 77 HOH HOH . K 6 HOH B 68 1068 15 HOH HOH . K 6 HOH B 69 1069 76 HOH HOH . K 6 HOH B 70 1070 151 HOH HOH . K 6 HOH B 71 1071 184 HOH HOH . K 6 HOH B 72 1072 141 HOH HOH . K 6 HOH B 73 1073 161 HOH HOH . K 6 HOH B 74 1074 30 HOH HOH . K 6 HOH B 75 1075 153 HOH HOH . K 6 HOH B 76 1076 186 HOH HOH . K 6 HOH B 77 1077 160 HOH HOH . K 6 HOH B 78 1078 93 HOH HOH . K 6 HOH B 79 1079 56 HOH HOH . K 6 HOH B 80 1080 185 HOH HOH . K 6 HOH B 81 1081 158 HOH HOH . K 6 HOH B 82 1082 138 HOH HOH . K 6 HOH B 83 1083 166 HOH HOH . K 6 HOH B 84 1084 49 HOH HOH . K 6 HOH B 85 1085 195 HOH HOH . K 6 HOH B 86 1086 137 HOH HOH . K 6 HOH B 87 1087 168 HOH HOH . K 6 HOH B 88 1088 82 HOH HOH . K 6 HOH B 89 1089 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 7PG . . . C 2 44.637 32.386 55.168 1 40.36 ? O1 7PG 901 A 1 HETATM 2 C C3 7PG . . . C 2 43.863 33.475 55.702 1 52.63 ? C3 7PG 901 A 1 HETATM 3 C C4 7PG . . . C 2 42.416 33.096 56.092 1 44.69 ? C4 7PG 901 A 1 HETATM 4 O O2 7PG . . . C 2 41.699 34.109 56.798 1 49.34 ? O2 7PG 901 A 1 HETATM 5 C C5 7PG . . . C 2 40.558 34.598 56.153 1 45.06 ? C5 7PG 901 A 1 HETATM 6 C C6 7PG . . . C 2 40.671 36.047 55.714 1 55.86 ? C6 7PG 901 A 1 HETATM 7 O O3 7PG . . . C 2 40.228 36.168 54.384 1 59.02 ? O3 7PG 901 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #