data_6H5Y
#
_model_server_result.job_id            A9-edw7tfgMALlGrrDMbhg 
_model_server_result.datetime_utc      '2024-12-01 19:26:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":502}' 
#
_entry.id    6H5Y 
#
_exptl.entry_id    6H5Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H5Y 
_cell.length_a            202.61 
_cell.length_b            202.61 
_cell.length_c            202.61 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 85 A CYS 85 1_555 A SG CYS 485 A CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 117 A CYS 117 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 B SG CYS 85 B CYS 85 1_555 B SG CYS 485 B CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 B SG CYS 117 B CYS 117 1_555 B SG CYS 204 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 A ND2 ASN 54 A ASN 54 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 A ND2 ASN 433 A ASN 433 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 B ND2 ASN 54 B ASN 54 1_555 J C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale4 B ND2 ASN 433 B ASN 433 1_555 K C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
metalc ? metalc1 A NE2 HIS 64 A HIS 64 1_555 G CU CU . A CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? 
metalc ? metalc2 A ND1 HIS 66 A HIS 66 1_555 E CU CU . A CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc3 A NE2 HIS 109 A HIS 109 1_555 E CU CU . A CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc4 A NE2 HIS 111 A HIS 111 1_555 F CU CU . A CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc5 A ND1 HIS 394 A HIS 394 1_555 H CU CU . A CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc6 A NE2 HIS 397 A HIS 397 1_555 G CU CU . A CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc7 A NE2 HIS 399 A HIS 399 1_555 F CU CU . A CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc8 A NE2 HIS 449 A HIS 449 1_555 F CU CU . A CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc9 A SG CYS 450 A CYS 450 1_555 H CU CU . A CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc10 A NE2 HIS 451 A HIS 451 1_555 E CU CU . A CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc11 A ND1 HIS 455 A HIS 455 1_555 H CU CU . A CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc12 B NE2 HIS 64 B HIS 64 1_555 M CU CU . B CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc13 B ND1 HIS 66 B HIS 66 1_555 N CU CU . B CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc14 B NE2 HIS 109 B HIS 109 1_555 N CU CU . B CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc15 B NE2 HIS 111 B HIS 111 1_555 L CU CU . B CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc16 B ND1 HIS 394 B HIS 394 1_555 O CU CU . B CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc17 B NE2 HIS 397 B HIS 397 1_555 M CU CU . B CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc18 B NE2 HIS 399 B HIS 399 1_555 L CU CU . B CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc19 B NE2 HIS 449 B HIS 449 1_555 L CU CU . B CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc20 B SG CYS 450 B CYS 450 1_555 O CU CU . B CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc21 B NE2 HIS 451 B HIS 451 1_555 N CU CU . B CU 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc22 B ND1 HIS 455 B HIS 455 1_555 O CU CU . B CU 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc23 M CU CU . B CU 504 1_555 Q O HOH . B HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6H5Y 
_atom_sites.fract_transf_matrix[1][1]    0.004936 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004936 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 501 1 NAG NAG . 
D 2 NAG A 1 502 2 NAG NAG . 
E 3 CU A 1 503 1 CU CU . 
F 3 CU A 1 504 2 CU CU . 
G 3 CU A 1 505 3 CU CU . 
H 3 CU A 1 506 7 CU CU . 
I 4 SO4 A 1 507 1 SO4 SO4 . 
J 2 NAG B 1 501 1 NAG NAG . 
K 2 NAG B 1 502 2 NAG NAG . 
L 3 CU B 1 503 4 CU CU . 
M 3 CU B 1 504 5 CU CU . 
N 3 CU B 1 505 6 CU CU . 
O 3 CU B 1 506 8 CU CU . 
P 5 HOH A 1 601 53 HOH HOH . 
P 5 HOH A 2 602 35 HOH HOH . 
P 5 HOH A 3 603 2 HOH HOH . 
P 5 HOH A 4 604 12 HOH HOH . 
P 5 HOH A 5 605 27 HOH HOH . 
P 5 HOH A 6 606 118 HOH HOH . 
P 5 HOH A 7 607 67 HOH HOH . 
P 5 HOH A 8 608 3 HOH HOH . 
P 5 HOH A 9 609 85 HOH HOH . 
P 5 HOH A 10 610 107 HOH HOH . 
P 5 HOH A 11 611 11 HOH HOH . 
P 5 HOH A 12 612 10 HOH HOH . 
P 5 HOH A 13 613 20 HOH HOH . 
P 5 HOH A 14 614 52 HOH HOH . 
P 5 HOH A 15 615 86 HOH HOH . 
P 5 HOH A 16 616 1 HOH HOH . 
P 5 HOH A 17 617 87 HOH HOH . 
P 5 HOH A 18 618 9 HOH HOH . 
P 5 HOH A 19 619 55 HOH HOH . 
P 5 HOH A 20 620 28 HOH HOH . 
P 5 HOH A 21 621 30 HOH HOH . 
P 5 HOH A 22 622 56 HOH HOH . 
P 5 HOH A 23 623 49 HOH HOH . 
P 5 HOH A 24 624 6 HOH HOH . 
P 5 HOH A 25 625 50 HOH HOH . 
P 5 HOH A 26 626 24 HOH HOH . 
P 5 HOH A 27 627 116 HOH HOH . 
P 5 HOH A 28 628 66 HOH HOH . 
P 5 HOH A 29 629 38 HOH HOH . 
P 5 HOH A 30 630 59 HOH HOH . 
P 5 HOH A 31 631 32 HOH HOH . 
P 5 HOH A 32 632 14 HOH HOH . 
P 5 HOH A 33 633 22 HOH HOH . 
P 5 HOH A 34 634 8 HOH HOH . 
P 5 HOH A 35 635 39 HOH HOH . 
P 5 HOH A 36 636 156 HOH HOH . 
P 5 HOH A 37 637 61 HOH HOH . 
P 5 HOH A 38 638 73 HOH HOH . 
P 5 HOH A 39 639 37 HOH HOH . 
P 5 HOH A 40 640 44 HOH HOH . 
P 5 HOH A 41 641 68 HOH HOH . 
Q 5 HOH B 1 601 29 HOH HOH . 
Q 5 HOH B 2 602 129 HOH HOH . 
Q 5 HOH B 3 603 21 HOH HOH . 
Q 5 HOH B 4 604 99 HOH HOH . 
Q 5 HOH B 5 605 25 HOH HOH . 
Q 5 HOH B 6 606 82 HOH HOH . 
Q 5 HOH B 7 607 72 HOH HOH . 
Q 5 HOH B 8 608 58 HOH HOH . 
Q 5 HOH B 9 609 17 HOH HOH . 
Q 5 HOH B 10 610 7 HOH HOH . 
Q 5 HOH B 11 611 54 HOH HOH . 
Q 5 HOH B 12 612 13 HOH HOH . 
Q 5 HOH B 13 613 16 HOH HOH . 
Q 5 HOH B 14 614 4 HOH HOH . 
Q 5 HOH B 15 615 71 HOH HOH . 
Q 5 HOH B 16 616 138 HOH HOH . 
Q 5 HOH B 17 617 57 HOH HOH . 
Q 5 HOH B 18 618 48 HOH HOH . 
Q 5 HOH B 19 619 33 HOH HOH . 
Q 5 HOH B 20 620 23 HOH HOH . 
Q 5 HOH B 21 621 18 HOH HOH . 
Q 5 HOH B 22 622 42 HOH HOH . 
Q 5 HOH B 23 623 64 HOH HOH . 
Q 5 HOH B 24 624 26 HOH HOH . 
Q 5 HOH B 25 625 63 HOH HOH . 
Q 5 HOH B 26 626 31 HOH HOH . 
Q 5 HOH B 27 627 88 HOH HOH . 
Q 5 HOH B 28 628 51 HOH HOH . 
Q 5 HOH B 29 629 19 HOH HOH . 
Q 5 HOH B 30 630 83 HOH HOH . 
Q 5 HOH B 31 631 15 HOH HOH . 
Q 5 HOH B 32 632 62 HOH HOH . 
Q 5 HOH B 33 633 75 HOH HOH . 
Q 5 HOH B 34 634 60 HOH HOH . 
Q 5 HOH B 35 635 145 HOH HOH . 
Q 5 HOH B 36 636 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . K 2 27.429 -73.483 2.241 1 70.54 ? C1 NAG 502 B 1 
HETATM 2 C C2 NAG . . . K 2 27.961 -74.45 3.322 1 68.41 ? C2 NAG 502 B 1 
HETATM 3 C C3 NAG . . . K 2 27.359 -75.838 3.138 1 70.92 ? C3 NAG 502 B 1 
HETATM 4 C C4 NAG . . . K 2 25.84 -75.77 3.151 1 71.36 ? C4 NAG 502 B 1 
HETATM 5 C C5 NAG . . . K 2 25.346 -74.832 2.053 1 70.46 ? C5 NAG 502 B 1 
HETATM 6 C C6 NAG . . . K 2 23.841 -74.657 2.094 1 64.14 ? C6 NAG 502 B 1 
HETATM 7 C C7 NAG . . . K 2 30.231 -73.711 3.956 1 69.72 ? C7 NAG 502 B 1 
HETATM 8 C C8 NAG . . . K 2 31.694 -74 3.822 1 62.98 ? C8 NAG 502 B 1 
HETATM 9 N N2 NAG . . . K 2 29.412 -74.541 3.299 1 70.23 ? N2 NAG 502 B 1 
HETATM 10 O O3 NAG . . . K 2 27.815 -76.685 4.185 1 69.26 ? O3 NAG 502 B 1 
HETATM 11 O O4 NAG . . . K 2 25.303 -77.071 2.939 1 73.09 ? O4 NAG 502 B 1 
HETATM 12 O O5 NAG . . . K 2 25.938 -73.528 2.211 1 71.76 ? O5 NAG 502 B 1 
HETATM 13 O O6 NAG . . . K 2 23.376 -73.558 1.323 1 70.08 ? O6 NAG 502 B 1 
HETATM 14 O O7 NAG . . . K 2 29.812 -72.76 4.612 1 75.27 ? O7 NAG 502 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#