data_6H5Z
#
_model_server_result.job_id            W16HGzcIwPu4YjBStY3dtQ 
_model_server_result.datetime_utc      '2024-11-24 08:09:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h5z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6H5Z 
#
_exptl.entry_id    6H5Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6H5Z 
_cell.length_a            87.733 
_cell.length_b            87.733 
_cell.length_c            113.625 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H5Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc2 A NE2 HIS 61 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc3 A NE2 HIS 93 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc4 A NE2 HIS 93 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.871 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 83 n n 
C1 O1 DIO sing 84 n n 
C1 H11 DIO sing 85 n n 
C1 H12 DIO sing 86 n n 
C2 C2' DIO sing 87 n n 
C2 O1 DIO sing 88 n n 
C2 H21 DIO sing 89 n n 
C2 H22 DIO sing 90 n n 
C1' O1' DIO sing 91 n n 
C1' "H1'1" DIO sing 92 n n 
C1' "H1'2" DIO sing 93 n n 
C2' O1' DIO sing 94 n n 
C2' "H2'1" DIO sing 95 n n 
C2' "H2'2" DIO sing 96 n n 
#
_atom_sites.entry_id                     6H5Z 
_atom_sites.fract_transf_matrix[1][1]    0.011398 
_atom_sites.fract_transf_matrix[1][2]    0.006581 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013162 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008801 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 200 HEM HEM . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 4 DIO A 1 203 2 DIO DIO . 
E 5 HOH A 1 301 1 HOH HOH . 
E 5 HOH A 2 302 38 HOH HOH . 
E 5 HOH A 3 303 32 HOH HOH . 
E 5 HOH A 4 304 7 HOH HOH . 
E 5 HOH A 5 305 64 HOH HOH . 
E 5 HOH A 6 306 56 HOH HOH . 
E 5 HOH A 7 307 2 HOH HOH . 
E 5 HOH A 8 308 25 HOH HOH . 
E 5 HOH A 9 309 18 HOH HOH . 
E 5 HOH A 10 310 55 HOH HOH . 
E 5 HOH A 11 311 24 HOH HOH . 
E 5 HOH A 12 312 20 HOH HOH . 
E 5 HOH A 13 313 17 HOH HOH . 
E 5 HOH A 14 314 46 HOH HOH . 
E 5 HOH A 15 315 19 HOH HOH . 
E 5 HOH A 16 316 8 HOH HOH . 
E 5 HOH A 17 317 31 HOH HOH . 
E 5 HOH A 18 318 39 HOH HOH . 
E 5 HOH A 19 319 22 HOH HOH . 
E 5 HOH A 20 320 23 HOH HOH . 
E 5 HOH A 21 321 45 HOH HOH . 
E 5 HOH A 22 322 29 HOH HOH . 
E 5 HOH A 23 323 53 HOH HOH . 
E 5 HOH A 24 324 35 HOH HOH . 
E 5 HOH A 25 325 27 HOH HOH . 
E 5 HOH A 26 326 13 HOH HOH . 
E 5 HOH A 27 327 44 HOH HOH . 
E 5 HOH A 28 328 33 HOH HOH . 
E 5 HOH A 29 329 26 HOH HOH . 
E 5 HOH A 30 330 21 HOH HOH . 
E 5 HOH A 31 331 50 HOH HOH . 
E 5 HOH A 32 332 4 HOH HOH . 
E 5 HOH A 33 333 34 HOH HOH . 
E 5 HOH A 34 334 15 HOH HOH . 
E 5 HOH A 35 335 16 HOH HOH . 
E 5 HOH A 36 336 43 HOH HOH . 
E 5 HOH A 37 337 5 HOH HOH . 
E 5 HOH A 38 338 28 HOH HOH . 
E 5 HOH A 39 339 61 HOH HOH . 
E 5 HOH A 40 340 62 HOH HOH . 
E 5 HOH A 41 341 42 HOH HOH . 
E 5 HOH A 42 342 6 HOH HOH . 
E 5 HOH A 43 343 63 HOH HOH . 
E 5 HOH A 44 344 40 HOH HOH . 
E 5 HOH A 45 345 66 HOH HOH . 
E 5 HOH A 46 346 37 HOH HOH . 
E 5 HOH A 47 347 67 HOH HOH . 
E 5 HOH A 48 348 41 HOH HOH . 
E 5 HOH A 49 349 52 HOH HOH . 
E 5 HOH A 50 350 58 HOH HOH . 
E 5 HOH A 51 351 9 HOH HOH . 
E 5 HOH A 52 352 30 HOH HOH . 
E 5 HOH A 53 353 48 HOH HOH . 
E 5 HOH A 54 354 10 HOH HOH . 
E 5 HOH A 55 355 65 HOH HOH . 
E 5 HOH A 56 356 3 HOH HOH . 
E 5 HOH A 57 357 49 HOH HOH . 
E 5 HOH A 58 358 54 HOH HOH . 
E 5 HOH A 59 359 51 HOH HOH . 
E 5 HOH A 60 360 68 HOH HOH . 
E 5 HOH A 61 361 60 HOH HOH . 
E 5 HOH A 62 362 47 HOH HOH . 
E 5 HOH A 63 363 59 HOH HOH . 
E 5 HOH A 64 364 14 HOH HOH . 
E 5 HOH A 65 365 36 HOH HOH . 
E 5 HOH A 66 366 11 HOH HOH . 
E 5 HOH A 67 367 12 HOH HOH . 
E 5 HOH A 68 368 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . D 4 -19.255 -19.576 -2.61 1 73.19 ? C1 DIO 203 A 1 
HETATM 2 C C2 DIO . . . D 4 -19.427 -18.436 -4.713 1 61.83 ? C2 DIO 203 A 1 
HETATM 3 C C1' DIO . . . D 4 -18.119 -20.45 -3.178 1 71.77 ? C1' DIO 203 A 1 
HETATM 4 C C2' DIO . . . D 4 -18.378 -19.451 -5.228 1 65.65 ? C2' DIO 203 A 1 
HETATM 5 O O1 DIO . . . D 4 -19.323 -18.299 -3.29 1 71.66 ? O1 DIO 203 A 1 
HETATM 6 O O1' DIO . . . D 4 -18.476 -20.698 -4.554 1 73.67 ? O1' DIO 203 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           64 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#