data_6H62
#
_model_server_result.job_id            zE5NKHE_QZD3kHalcPxTWg 
_model_server_result.datetime_utc      '2024-11-13 00:25:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h62 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    6H62 
#
_exptl.entry_id    6H62 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H62 
_cell.length_a            83.704 
_cell.length_b            93.767 
_cell.length_c            117.127 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H62 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 317 A CYS 317 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc2 A SG CYS 319 A CYS 319 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 A SG CYS 322 A CYS 322 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc4 A ND1 HIS 348 A HIS 348 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc5 B SG CYS 317 B CYS 317 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc6 B SG CYS 319 B CYS 319 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc7 B SG CYS 322 B CYS 322 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc8 B ND1 HIS 348 B HIS 348 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6H62 
_atom_sites.fract_transf_matrix[1][1]    0.011947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008538 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 501 1 ZN ZN . 
D 3 GOL A 1 502 1 GOL GOL . 
E 2 ZN B 1 501 2 ZN ZN . 
F 3 GOL B 1 502 2 GOL GOL . 
G 4 HOH A 1 601 122 HOH HOH . 
G 4 HOH A 2 602 8 HOH HOH . 
G 4 HOH A 3 603 166 HOH HOH . 
G 4 HOH A 4 604 164 HOH HOH . 
G 4 HOH A 5 605 217 HOH HOH . 
G 4 HOH A 6 606 31 HOH HOH . 
G 4 HOH A 7 607 56 HOH HOH . 
G 4 HOH A 8 608 29 HOH HOH . 
G 4 HOH A 9 609 232 HOH HOH . 
G 4 HOH A 10 610 27 HOH HOH . 
G 4 HOH A 11 611 174 HOH HOH . 
G 4 HOH A 12 612 210 HOH HOH . 
G 4 HOH A 13 613 41 HOH HOH . 
G 4 HOH A 14 614 209 HOH HOH . 
G 4 HOH A 15 615 225 HOH HOH . 
G 4 HOH A 16 616 211 HOH HOH . 
G 4 HOH A 17 617 132 HOH HOH . 
G 4 HOH A 18 618 163 HOH HOH . 
G 4 HOH A 19 619 102 HOH HOH . 
G 4 HOH A 20 620 127 HOH HOH . 
G 4 HOH A 21 621 192 HOH HOH . 
G 4 HOH A 22 622 125 HOH HOH . 
G 4 HOH A 23 623 227 HOH HOH . 
G 4 HOH A 24 624 218 HOH HOH . 
G 4 HOH A 25 625 162 HOH HOH . 
G 4 HOH A 26 626 165 HOH HOH . 
G 4 HOH A 27 627 157 HOH HOH . 
G 4 HOH A 28 628 176 HOH HOH . 
G 4 HOH A 29 629 212 HOH HOH . 
G 4 HOH A 30 630 160 HOH HOH . 
G 4 HOH A 31 631 223 HOH HOH . 
G 4 HOH A 32 632 128 HOH HOH . 
G 4 HOH A 33 633 226 HOH HOH . 
H 4 HOH B 1 601 146 HOH HOH . 
H 4 HOH B 2 602 195 HOH HOH . 
H 4 HOH B 3 603 236 HOH HOH . 
H 4 HOH B 4 604 180 HOH HOH . 
H 4 HOH B 5 605 189 HOH HOH . 
H 4 HOH B 6 606 168 HOH HOH . 
H 4 HOH B 7 607 161 HOH HOH . 
H 4 HOH B 8 608 154 HOH HOH . 
H 4 HOH B 9 609 151 HOH HOH . 
H 4 HOH B 10 610 170 HOH HOH . 
H 4 HOH B 11 611 133 HOH HOH . 
H 4 HOH B 12 612 184 HOH HOH . 
H 4 HOH B 13 613 140 HOH HOH . 
H 4 HOH B 14 614 222 HOH HOH . 
H 4 HOH B 15 615 158 HOH HOH . 
H 4 HOH B 16 616 169 HOH HOH . 
H 4 HOH B 17 617 179 HOH HOH . 
H 4 HOH B 18 618 152 HOH HOH . 
H 4 HOH B 19 619 197 HOH HOH . 
H 4 HOH B 20 620 198 HOH HOH . 
H 4 HOH B 21 621 216 HOH HOH . 
H 4 HOH B 22 622 167 HOH HOH . 
H 4 HOH B 23 623 171 HOH HOH . 
H 4 HOH B 24 624 153 HOH HOH . 
H 4 HOH B 25 625 229 HOH HOH . 
H 4 HOH B 26 626 221 HOH HOH . 
H 4 HOH B 27 627 141 HOH HOH . 
H 4 HOH B 28 628 191 HOH HOH . 
H 4 HOH B 29 629 183 HOH HOH . 
H 4 HOH B 30 630 230 HOH HOH . 
H 4 HOH B 31 631 190 HOH HOH . 
H 4 HOH B 32 632 220 HOH HOH . 
H 4 HOH B 33 633 219 HOH HOH . 
H 4 HOH B 34 634 207 HOH HOH . 
H 4 HOH B 35 635 159 HOH HOH . 
H 4 HOH B 36 636 214 HOH HOH . 
H 4 HOH B 37 637 194 HOH HOH . 
H 4 HOH B 38 638 172 HOH HOH . 
H 4 HOH B 39 639 208 HOH HOH . 
H 4 HOH B 40 640 178 HOH HOH . 
H 4 HOH B 41 641 143 HOH HOH . 
H 4 HOH B 42 642 155 HOH HOH . 
H 4 HOH B 43 643 231 HOH HOH . 
H 4 HOH B 44 644 144 HOH HOH . 
H 4 HOH B 45 645 235 HOH HOH . 
H 4 HOH B 46 646 135 HOH HOH . 
H 4 HOH B 47 647 199 HOH HOH . 
H 4 HOH B 48 648 233 HOH HOH . 
H 4 HOH B 49 649 234 HOH HOH . 
H 4 HOH B 50 650 228 HOH HOH . 
H 4 HOH B 51 651 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 23.816 24.03 34.132 1 73.34 ? C1 GOL 502 B 1 
HETATM 2 O O1 GOL . . . F 3 24.861 23.109 34.144 1 72.39 ? O1 GOL 502 B 1 
HETATM 3 C C2 GOL . . . F 3 22.5 23.222 34.233 1 76.94 ? C2 GOL 502 B 1 
HETATM 4 O O2 GOL . . . F 3 22.375 22.587 35.46 1 75.5 ? O2 GOL 502 B 1 
HETATM 5 C C3 GOL . . . F 3 22.559 22.22 33.057 1 77.08 ? C3 GOL 502 B 1 
HETATM 6 O O3 GOL . . . F 3 21.261 21.747 32.868 1 71.83 ? O3 GOL 502 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#