data_6H65
#
_model_server_result.job_id            O69MTq3We5eNbjP8ZY6zJA 
_model_server_result.datetime_utc      '2024-12-26 11:06:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    6H65 
#
_exptl.entry_id    6H65 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H65 
_cell.length_a            95.08 
_cell.length_b            164.93 
_cell.length_c            254.22 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,M 1 1,2 
B,H,N 2 1,3 
C,I,O 3 1 
E,K,Q 3 3 
D,J,P 4 1 
F,L,R 4 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 95.08 0 127.11 
3 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 167 A LYS 167 1_555 G C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? 
covale ? covale2 B NZ LYS 167 B LYS 167 1_555 H C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale3 C NZ LYS 167 C LYS 167 1_555 I C4A PLP . C PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale4 D NZ LYS 167 D LYS 167 1_555 J C4A PLP . D PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? 
covale ? covale5 E NZ LYS 167 E LYS 167 1_555 K C4A PLP . E PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale6 F NZ LYS 167 F LYS 167 1_555 L C4A PLP . F PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     6H65 
_atom_sites.fract_transf_matrix[1][1]    0.010517 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PLP A 1 401 1 PLP PLP . 
H 2 PLP B 1 401 2 PLP PLP . 
I 2 PLP C 1 401 3 PLP PLP . 
J 2 PLP D 1 401 5 PLP PLP . 
K 2 PLP E 1 401 4 PLP PLP . 
L 2 PLP F 1 401 6 PLP PLP . 
M 3 HOH A 1 501 37 HOH HOH . 
M 3 HOH A 2 502 46 HOH HOH . 
M 3 HOH A 3 503 14 HOH HOH . 
M 3 HOH A 4 504 71 HOH HOH . 
M 3 HOH A 5 505 11 HOH HOH . 
M 3 HOH A 6 506 62 HOH HOH . 
M 3 HOH A 7 507 35 HOH HOH . 
M 3 HOH A 8 508 31 HOH HOH . 
M 3 HOH A 9 509 90 HOH HOH . 
M 3 HOH A 10 510 104 HOH HOH . 
M 3 HOH A 11 511 80 HOH HOH . 
M 3 HOH A 12 512 10 HOH HOH . 
M 3 HOH A 13 513 41 HOH HOH . 
M 3 HOH A 14 514 88 HOH HOH . 
M 3 HOH A 15 515 44 HOH HOH . 
M 3 HOH A 16 516 85 HOH HOH . 
M 3 HOH A 17 517 73 HOH HOH . 
N 3 HOH B 1 501 103 HOH HOH . 
N 3 HOH B 2 502 53 HOH HOH . 
N 3 HOH B 3 503 60 HOH HOH . 
N 3 HOH B 4 504 110 HOH HOH . 
N 3 HOH B 5 505 107 HOH HOH . 
N 3 HOH B 6 506 15 HOH HOH . 
N 3 HOH B 7 507 32 HOH HOH . 
N 3 HOH B 8 508 3 HOH HOH . 
N 3 HOH B 9 509 69 HOH HOH . 
N 3 HOH B 10 510 82 HOH HOH . 
N 3 HOH B 11 511 67 HOH HOH . 
N 3 HOH B 12 512 75 HOH HOH . 
N 3 HOH B 13 513 23 HOH HOH . 
N 3 HOH B 14 514 76 HOH HOH . 
N 3 HOH B 15 515 91 HOH HOH . 
N 3 HOH B 16 516 83 HOH HOH . 
N 3 HOH B 17 517 1 HOH HOH . 
N 3 HOH B 18 518 64 HOH HOH . 
N 3 HOH B 19 519 63 HOH HOH . 
N 3 HOH B 20 520 109 HOH HOH . 
N 3 HOH B 21 521 42 HOH HOH . 
O 3 HOH C 1 501 78 HOH HOH . 
O 3 HOH C 2 502 70 HOH HOH . 
O 3 HOH C 3 503 38 HOH HOH . 
O 3 HOH C 4 504 65 HOH HOH . 
O 3 HOH C 5 505 13 HOH HOH . 
O 3 HOH C 6 506 20 HOH HOH . 
O 3 HOH C 7 507 4 HOH HOH . 
O 3 HOH C 8 508 5 HOH HOH . 
O 3 HOH C 9 509 99 HOH HOH . 
O 3 HOH C 10 510 25 HOH HOH . 
O 3 HOH C 11 511 12 HOH HOH . 
O 3 HOH C 12 512 108 HOH HOH . 
O 3 HOH C 13 513 79 HOH HOH . 
O 3 HOH C 14 514 95 HOH HOH . 
O 3 HOH C 15 515 54 HOH HOH . 
O 3 HOH C 16 516 74 HOH HOH . 
O 3 HOH C 17 517 24 HOH HOH . 
O 3 HOH C 18 518 111 HOH HOH . 
O 3 HOH C 19 519 61 HOH HOH . 
O 3 HOH C 20 520 49 HOH HOH . 
O 3 HOH C 21 521 47 HOH HOH . 
O 3 HOH C 22 522 84 HOH HOH . 
O 3 HOH C 23 523 16 HOH HOH . 
O 3 HOH C 24 524 101 HOH HOH . 
O 3 HOH C 25 525 112 HOH HOH . 
P 3 HOH D 1 501 92 HOH HOH . 
P 3 HOH D 2 502 26 HOH HOH . 
P 3 HOH D 3 503 48 HOH HOH . 
P 3 HOH D 4 504 39 HOH HOH . 
P 3 HOH D 5 505 93 HOH HOH . 
P 3 HOH D 6 506 56 HOH HOH . 
P 3 HOH D 7 507 45 HOH HOH . 
P 3 HOH D 8 508 27 HOH HOH . 
P 3 HOH D 9 509 68 HOH HOH . 
P 3 HOH D 10 510 18 HOH HOH . 
P 3 HOH D 11 511 40 HOH HOH . 
P 3 HOH D 12 512 98 HOH HOH . 
P 3 HOH D 13 513 94 HOH HOH . 
P 3 HOH D 14 514 7 HOH HOH . 
P 3 HOH D 15 515 87 HOH HOH . 
P 3 HOH D 16 516 77 HOH HOH . 
Q 3 HOH E 1 501 51 HOH HOH . 
Q 3 HOH E 2 502 57 HOH HOH . 
Q 3 HOH E 3 503 33 HOH HOH . 
Q 3 HOH E 4 504 21 HOH HOH . 
Q 3 HOH E 5 505 22 HOH HOH . 
Q 3 HOH E 6 506 86 HOH HOH . 
Q 3 HOH E 7 507 2 HOH HOH . 
Q 3 HOH E 8 508 36 HOH HOH . 
Q 3 HOH E 9 509 34 HOH HOH . 
Q 3 HOH E 10 510 43 HOH HOH . 
Q 3 HOH E 11 511 100 HOH HOH . 
Q 3 HOH E 12 512 52 HOH HOH . 
Q 3 HOH E 13 513 66 HOH HOH . 
Q 3 HOH E 14 514 72 HOH HOH . 
Q 3 HOH E 15 515 96 HOH HOH . 
Q 3 HOH E 16 516 19 HOH HOH . 
Q 3 HOH E 17 517 97 HOH HOH . 
Q 3 HOH E 18 518 30 HOH HOH . 
Q 3 HOH E 19 519 50 HOH HOH . 
R 3 HOH F 1 501 89 HOH HOH . 
R 3 HOH F 2 502 17 HOH HOH . 
R 3 HOH F 3 503 55 HOH HOH . 
R 3 HOH F 4 504 58 HOH HOH . 
R 3 HOH F 5 505 102 HOH HOH . 
R 3 HOH F 6 506 6 HOH HOH . 
R 3 HOH F 7 507 9 HOH HOH . 
R 3 HOH F 8 508 29 HOH HOH . 
R 3 HOH F 9 509 59 HOH HOH . 
R 3 HOH F 10 510 8 HOH HOH . 
R 3 HOH F 11 511 28 HOH HOH . 
R 3 HOH F 12 512 81 HOH HOH . 
R 3 HOH F 13 513 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . J 2 61.715 -42.014 51.085 1 47.73 ? N1 PLP 401 D 1 
HETATM 2 C C2 PLP . . . J 2 62.454 -41.734 52.185 1 48.29 ? C2 PLP 401 D 1 
HETATM 3 C C2A PLP . . . J 2 61.808 -41.282 53.496 1 45.92 ? C2A PLP 401 D 1 
HETATM 4 C C3 PLP . . . J 2 63.926 -41.86 52.096 1 47.11 ? C3 PLP 401 D 1 
HETATM 5 O O3 PLP . . . J 2 64.655 -41.519 53.157 1 49.93 ? O3 PLP 401 D 1 
HETATM 6 C C4 PLP . . . J 2 64.509 -42.261 50.837 1 47.8 ? C4 PLP 401 D 1 
HETATM 7 C C4A PLP . . . J 2 65.948 -42.31 50.756 1 47.8 ? C4A PLP 401 D 1 
HETATM 8 C C5 PLP . . . J 2 63.529 -42.49 49.709 1 50.15 ? C5 PLP 401 D 1 
HETATM 9 C C6 PLP . . . J 2 62.195 -42.394 49.907 1 47.61 ? C6 PLP 401 D 1 
HETATM 10 C C5A PLP . . . J 2 63.89 -42.896 48.305 1 53.02 ? C5A PLP 401 D 1 
HETATM 11 O O4P PLP . . . J 2 64.772 -41.887 47.68 1 52.51 ? O4P PLP 401 D 1 
HETATM 12 P P PLP . . . J 2 65.611 -42.225 46.374 1 49.29 ? P PLP 401 D 1 
HETATM 13 O O1P PLP . . . J 2 64.565 -42.769 45.354 1 53.21 ? O1P PLP 401 D 1 
HETATM 14 O O2P PLP . . . J 2 66.2 -40.879 46.219 1 50.38 ? O2P PLP 401 D 1 
HETATM 15 O O3P PLP . . . J 2 66.476 -43.284 46.864 1 52.56 ? O3P PLP 401 D 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#