data_6H6D # _model_server_result.job_id PhVnOej16G7dW1mGmdN2fQ _model_server_result.datetime_utc '2024-11-02 05:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":103}' # _entry.id 6H6D # _exptl.entry_id 6H6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 84.2 _cell.angle_beta 86.69 _cell.angle_gamma 81.75 _cell.entry_id 6H6D _cell.length_a 47.14 _cell.length_b 69.24 _cell.length_c 87.16 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,DA,EA,FA 1 1 D,E,F,V,W,X,Y,Z,AA,BA,CA,GA,HA,IA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 Q N N ? 5 R N N ? 5 V N N ? 5 Z N N ? 5 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 E SG CYS 25 E CYS 25 1_555 E SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6H6D _atom_sites.fract_transf_matrix[1][1] 0.021213 _atom_sites.fract_transf_matrix[1][2] -0.003077 _atom_sites.fract_transf_matrix[1][3] -0.000941 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014594 _atom_sites.fract_transf_matrix[2][3] -0.001376 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 SO4 A 1 401 2 SO4 SO4 . H 4 SO4 A 1 402 3 SO4 SO4 . I 5 GOL A 1 403 3 GOL GOL . J 5 GOL A 1 404 7 GOL GOL . K 5 GOL A 1 405 9 GOL GOL . L 6 CL A 1 406 2 CL CL . M 6 CL A 1 407 5 CL CL . N 6 CL A 1 408 13 CL CL . O 6 CL A 1 409 14 CL CL . P 4 SO4 B 1 101 1 SO4 SO4 . Q 5 GOL B 1 102 1 GOL GOL . R 5 GOL B 1 103 5 GOL GOL . S 6 CL B 1 104 1 CL CL . T 6 CL B 1 105 7 CL CL . U 6 CL B 1 106 12 CL CL . V 5 GOL D 1 401 2 GOL GOL . W 6 CL D 1 402 6 CL CL . X 6 CL D 1 403 9 CL CL . Y 4 SO4 E 1 101 4 SO4 SO4 . Z 5 GOL E 1 102 6 GOL GOL . AA 5 GOL E 1 103 8 GOL GOL . BA 6 CL E 1 104 10 CL CL . CA 6 CL E 1 105 11 CL CL . DA 7 HOH A 1 501 83 HOH HOH . DA 7 HOH A 2 502 11 HOH HOH . DA 7 HOH A 3 503 38 HOH HOH . DA 7 HOH A 4 504 4 HOH HOH . DA 7 HOH A 5 505 22 HOH HOH . DA 7 HOH A 6 506 88 HOH HOH . DA 7 HOH A 7 507 110 HOH HOH . DA 7 HOH A 8 508 2 HOH HOH . DA 7 HOH A 9 509 311 HOH HOH . DA 7 HOH A 10 510 97 HOH HOH . DA 7 HOH A 11 511 81 HOH HOH . DA 7 HOH A 12 512 46 HOH HOH . DA 7 HOH A 13 513 16 HOH HOH . DA 7 HOH A 14 514 73 HOH HOH . DA 7 HOH A 15 515 12 HOH HOH . DA 7 HOH A 16 516 102 HOH HOH . DA 7 HOH A 17 517 103 HOH HOH . DA 7 HOH A 18 518 77 HOH HOH . DA 7 HOH A 19 519 70 HOH HOH . DA 7 HOH A 20 520 54 HOH HOH . DA 7 HOH A 21 521 30 HOH HOH . DA 7 HOH A 22 522 57 HOH HOH . DA 7 HOH A 23 523 34 HOH HOH . DA 7 HOH A 24 524 78 HOH HOH . DA 7 HOH A 25 525 60 HOH HOH . DA 7 HOH A 26 526 7 HOH HOH . DA 7 HOH A 27 527 43 HOH HOH . DA 7 HOH A 28 528 91 HOH HOH . DA 7 HOH A 29 529 51 HOH HOH . DA 7 HOH A 30 530 71 HOH HOH . DA 7 HOH A 31 531 85 HOH HOH . DA 7 HOH A 32 532 53 HOH HOH . DA 7 HOH A 33 533 57 HOH HOH . DA 7 HOH A 34 534 47 HOH HOH . DA 7 HOH A 35 535 192 HOH HOH . DA 7 HOH A 36 536 9 HOH HOH . DA 7 HOH A 37 537 42 HOH HOH . DA 7 HOH A 38 538 70 HOH HOH . DA 7 HOH A 39 539 12 HOH HOH . DA 7 HOH A 40 540 49 HOH HOH . DA 7 HOH A 41 541 42 HOH HOH . DA 7 HOH A 42 542 22 HOH HOH . DA 7 HOH A 43 543 63 HOH HOH . DA 7 HOH A 44 544 62 HOH HOH . DA 7 HOH A 45 545 73 HOH HOH . DA 7 HOH A 46 546 39 HOH HOH . DA 7 HOH A 47 547 111 HOH HOH . DA 7 HOH A 48 548 310 HOH HOH . DA 7 HOH A 49 549 178 HOH HOH . DA 7 HOH A 50 550 28 HOH HOH . DA 7 HOH A 51 551 312 HOH HOH . DA 7 HOH A 52 552 297 HOH HOH . EA 7 HOH B 1 201 48 HOH HOH . EA 7 HOH B 2 202 125 HOH HOH . EA 7 HOH B 3 203 35 HOH HOH . EA 7 HOH B 4 204 157 HOH HOH . EA 7 HOH B 5 205 32 HOH HOH . EA 7 HOH B 6 206 43 HOH HOH . EA 7 HOH B 7 207 88 HOH HOH . EA 7 HOH B 8 208 35 HOH HOH . EA 7 HOH B 9 209 16 HOH HOH . EA 7 HOH B 10 210 108 HOH HOH . EA 7 HOH B 11 211 36 HOH HOH . EA 7 HOH B 12 212 89 HOH HOH . EA 7 HOH B 13 213 80 HOH HOH . EA 7 HOH B 14 214 18 HOH HOH . EA 7 HOH B 15 215 19 HOH HOH . EA 7 HOH B 16 216 179 HOH HOH . FA 7 HOH C 1 101 82 HOH HOH . GA 7 HOH D 1 501 20 HOH HOH . GA 7 HOH D 2 502 104 HOH HOH . GA 7 HOH D 3 503 6 HOH HOH . GA 7 HOH D 4 504 52 HOH HOH . GA 7 HOH D 5 505 99 HOH HOH . GA 7 HOH D 6 506 27 HOH HOH . GA 7 HOH D 7 507 20 HOH HOH . GA 7 HOH D 8 508 29 HOH HOH . GA 7 HOH D 9 509 19 HOH HOH . GA 7 HOH D 10 510 113 HOH HOH . GA 7 HOH D 11 511 65 HOH HOH . GA 7 HOH D 12 512 107 HOH HOH . GA 7 HOH D 13 513 60 HOH HOH . GA 7 HOH D 14 514 41 HOH HOH . GA 7 HOH D 15 515 9 HOH HOH . GA 7 HOH D 16 516 42 HOH HOH . GA 7 HOH D 17 517 56 HOH HOH . GA 7 HOH D 18 518 106 HOH HOH . GA 7 HOH D 19 519 72 HOH HOH . GA 7 HOH D 20 520 140 HOH HOH . GA 7 HOH D 21 521 90 HOH HOH . GA 7 HOH D 22 522 94 HOH HOH . GA 7 HOH D 23 523 72 HOH HOH . GA 7 HOH D 24 524 3 HOH HOH . GA 7 HOH D 25 525 28 HOH HOH . GA 7 HOH D 26 526 57 HOH HOH . GA 7 HOH D 27 527 294 HOH HOH . GA 7 HOH D 28 528 96 HOH HOH . GA 7 HOH D 29 529 97 HOH HOH . GA 7 HOH D 30 530 293 HOH HOH . GA 7 HOH D 31 531 7 HOH HOH . GA 7 HOH D 32 532 318 HOH HOH . GA 7 HOH D 33 533 35 HOH HOH . GA 7 HOH D 34 534 21 HOH HOH . GA 7 HOH D 35 535 26 HOH HOH . GA 7 HOH D 36 536 33 HOH HOH . GA 7 HOH D 37 537 314 HOH HOH . GA 7 HOH D 38 538 137 HOH HOH . GA 7 HOH D 39 539 321 HOH HOH . HA 7 HOH E 1 201 15 HOH HOH . HA 7 HOH E 2 202 21 HOH HOH . HA 7 HOH E 3 203 90 HOH HOH . HA 7 HOH E 4 204 14 HOH HOH . HA 7 HOH E 5 205 8 HOH HOH . HA 7 HOH E 6 206 70 HOH HOH . HA 7 HOH E 7 207 221 HOH HOH . HA 7 HOH E 8 208 95 HOH HOH . HA 7 HOH E 9 209 180 HOH HOH . HA 7 HOH E 10 210 66 HOH HOH . HA 7 HOH E 11 211 62 HOH HOH . HA 7 HOH E 12 212 113 HOH HOH . IA 7 HOH F 1 101 68 HOH HOH . IA 7 HOH F 2 102 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . AA 5 11.775 55.303 -47.305 1 61.62 ? C1 GOL 103 E 1 HETATM 2 O O1 GOL . . . AA 5 12.678 56.038 -48.145 1 62.95 ? O1 GOL 103 E 1 HETATM 3 C C2 GOL . . . AA 5 12.549 54.876 -46.066 1 58.81 ? C2 GOL 103 E 1 HETATM 4 O O2 GOL . . . AA 5 13.883 54.689 -46.508 1 55.58 ? O2 GOL 103 E 1 HETATM 5 C C3 GOL . . . AA 5 12.066 53.593 -45.411 1 60.72 ? C3 GOL 103 E 1 HETATM 6 O O3 GOL . . . AA 5 10.649 53.57 -45.365 1 66.17 ? O3 GOL 103 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #