data_6H6D
#
_model_server_result.job_id            TnDwzEAAbdKHHFzcN1aP1A 
_model_server_result.datetime_utc      '2024-11-02 05:21:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":405}' 
#
_entry.id    6H6D 
#
_exptl.entry_id    6H6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         84.2 
_cell.angle_beta          86.69 
_cell.angle_gamma         81.75 
_cell.entry_id            6H6D 
_cell.length_a            47.14 
_cell.length_b            69.24 
_cell.length_c            87.16 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,DA,EA,FA 1 1 
D,E,F,V,W,X,Y,Z,AA,BA,CA,GA,HA,IA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 Q N N 
? 5 R N N 
? 5 V N N 
? 5 Z N N 
? 5 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 E SG CYS 25 E CYS 25 1_555 E SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6H6D 
_atom_sites.fract_transf_matrix[1][1]    0.021213 
_atom_sites.fract_transf_matrix[1][2]    -0.003077 
_atom_sites.fract_transf_matrix[1][3]    -0.000941 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014594 
_atom_sites.fract_transf_matrix[2][3]    -0.001376 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 SO4 A 1 401 2 SO4 SO4 . 
H 4 SO4 A 1 402 3 SO4 SO4 . 
I 5 GOL A 1 403 3 GOL GOL . 
J 5 GOL A 1 404 7 GOL GOL . 
K 5 GOL A 1 405 9 GOL GOL . 
L 6 CL A 1 406 2 CL CL . 
M 6 CL A 1 407 5 CL CL . 
N 6 CL A 1 408 13 CL CL . 
O 6 CL A 1 409 14 CL CL . 
P 4 SO4 B 1 101 1 SO4 SO4 . 
Q 5 GOL B 1 102 1 GOL GOL . 
R 5 GOL B 1 103 5 GOL GOL . 
S 6 CL B 1 104 1 CL CL . 
T 6 CL B 1 105 7 CL CL . 
U 6 CL B 1 106 12 CL CL . 
V 5 GOL D 1 401 2 GOL GOL . 
W 6 CL D 1 402 6 CL CL . 
X 6 CL D 1 403 9 CL CL . 
Y 4 SO4 E 1 101 4 SO4 SO4 . 
Z 5 GOL E 1 102 6 GOL GOL . 
AA 5 GOL E 1 103 8 GOL GOL . 
BA 6 CL E 1 104 10 CL CL . 
CA 6 CL E 1 105 11 CL CL . 
DA 7 HOH A 1 501 83 HOH HOH . 
DA 7 HOH A 2 502 11 HOH HOH . 
DA 7 HOH A 3 503 38 HOH HOH . 
DA 7 HOH A 4 504 4 HOH HOH . 
DA 7 HOH A 5 505 22 HOH HOH . 
DA 7 HOH A 6 506 88 HOH HOH . 
DA 7 HOH A 7 507 110 HOH HOH . 
DA 7 HOH A 8 508 2 HOH HOH . 
DA 7 HOH A 9 509 311 HOH HOH . 
DA 7 HOH A 10 510 97 HOH HOH . 
DA 7 HOH A 11 511 81 HOH HOH . 
DA 7 HOH A 12 512 46 HOH HOH . 
DA 7 HOH A 13 513 16 HOH HOH . 
DA 7 HOH A 14 514 73 HOH HOH . 
DA 7 HOH A 15 515 12 HOH HOH . 
DA 7 HOH A 16 516 102 HOH HOH . 
DA 7 HOH A 17 517 103 HOH HOH . 
DA 7 HOH A 18 518 77 HOH HOH . 
DA 7 HOH A 19 519 70 HOH HOH . 
DA 7 HOH A 20 520 54 HOH HOH . 
DA 7 HOH A 21 521 30 HOH HOH . 
DA 7 HOH A 22 522 57 HOH HOH . 
DA 7 HOH A 23 523 34 HOH HOH . 
DA 7 HOH A 24 524 78 HOH HOH . 
DA 7 HOH A 25 525 60 HOH HOH . 
DA 7 HOH A 26 526 7 HOH HOH . 
DA 7 HOH A 27 527 43 HOH HOH . 
DA 7 HOH A 28 528 91 HOH HOH . 
DA 7 HOH A 29 529 51 HOH HOH . 
DA 7 HOH A 30 530 71 HOH HOH . 
DA 7 HOH A 31 531 85 HOH HOH . 
DA 7 HOH A 32 532 53 HOH HOH . 
DA 7 HOH A 33 533 57 HOH HOH . 
DA 7 HOH A 34 534 47 HOH HOH . 
DA 7 HOH A 35 535 192 HOH HOH . 
DA 7 HOH A 36 536 9 HOH HOH . 
DA 7 HOH A 37 537 42 HOH HOH . 
DA 7 HOH A 38 538 70 HOH HOH . 
DA 7 HOH A 39 539 12 HOH HOH . 
DA 7 HOH A 40 540 49 HOH HOH . 
DA 7 HOH A 41 541 42 HOH HOH . 
DA 7 HOH A 42 542 22 HOH HOH . 
DA 7 HOH A 43 543 63 HOH HOH . 
DA 7 HOH A 44 544 62 HOH HOH . 
DA 7 HOH A 45 545 73 HOH HOH . 
DA 7 HOH A 46 546 39 HOH HOH . 
DA 7 HOH A 47 547 111 HOH HOH . 
DA 7 HOH A 48 548 310 HOH HOH . 
DA 7 HOH A 49 549 178 HOH HOH . 
DA 7 HOH A 50 550 28 HOH HOH . 
DA 7 HOH A 51 551 312 HOH HOH . 
DA 7 HOH A 52 552 297 HOH HOH . 
EA 7 HOH B 1 201 48 HOH HOH . 
EA 7 HOH B 2 202 125 HOH HOH . 
EA 7 HOH B 3 203 35 HOH HOH . 
EA 7 HOH B 4 204 157 HOH HOH . 
EA 7 HOH B 5 205 32 HOH HOH . 
EA 7 HOH B 6 206 43 HOH HOH . 
EA 7 HOH B 7 207 88 HOH HOH . 
EA 7 HOH B 8 208 35 HOH HOH . 
EA 7 HOH B 9 209 16 HOH HOH . 
EA 7 HOH B 10 210 108 HOH HOH . 
EA 7 HOH B 11 211 36 HOH HOH . 
EA 7 HOH B 12 212 89 HOH HOH . 
EA 7 HOH B 13 213 80 HOH HOH . 
EA 7 HOH B 14 214 18 HOH HOH . 
EA 7 HOH B 15 215 19 HOH HOH . 
EA 7 HOH B 16 216 179 HOH HOH . 
FA 7 HOH C 1 101 82 HOH HOH . 
GA 7 HOH D 1 501 20 HOH HOH . 
GA 7 HOH D 2 502 104 HOH HOH . 
GA 7 HOH D 3 503 6 HOH HOH . 
GA 7 HOH D 4 504 52 HOH HOH . 
GA 7 HOH D 5 505 99 HOH HOH . 
GA 7 HOH D 6 506 27 HOH HOH . 
GA 7 HOH D 7 507 20 HOH HOH . 
GA 7 HOH D 8 508 29 HOH HOH . 
GA 7 HOH D 9 509 19 HOH HOH . 
GA 7 HOH D 10 510 113 HOH HOH . 
GA 7 HOH D 11 511 65 HOH HOH . 
GA 7 HOH D 12 512 107 HOH HOH . 
GA 7 HOH D 13 513 60 HOH HOH . 
GA 7 HOH D 14 514 41 HOH HOH . 
GA 7 HOH D 15 515 9 HOH HOH . 
GA 7 HOH D 16 516 42 HOH HOH . 
GA 7 HOH D 17 517 56 HOH HOH . 
GA 7 HOH D 18 518 106 HOH HOH . 
GA 7 HOH D 19 519 72 HOH HOH . 
GA 7 HOH D 20 520 140 HOH HOH . 
GA 7 HOH D 21 521 90 HOH HOH . 
GA 7 HOH D 22 522 94 HOH HOH . 
GA 7 HOH D 23 523 72 HOH HOH . 
GA 7 HOH D 24 524 3 HOH HOH . 
GA 7 HOH D 25 525 28 HOH HOH . 
GA 7 HOH D 26 526 57 HOH HOH . 
GA 7 HOH D 27 527 294 HOH HOH . 
GA 7 HOH D 28 528 96 HOH HOH . 
GA 7 HOH D 29 529 97 HOH HOH . 
GA 7 HOH D 30 530 293 HOH HOH . 
GA 7 HOH D 31 531 7 HOH HOH . 
GA 7 HOH D 32 532 318 HOH HOH . 
GA 7 HOH D 33 533 35 HOH HOH . 
GA 7 HOH D 34 534 21 HOH HOH . 
GA 7 HOH D 35 535 26 HOH HOH . 
GA 7 HOH D 36 536 33 HOH HOH . 
GA 7 HOH D 37 537 314 HOH HOH . 
GA 7 HOH D 38 538 137 HOH HOH . 
GA 7 HOH D 39 539 321 HOH HOH . 
HA 7 HOH E 1 201 15 HOH HOH . 
HA 7 HOH E 2 202 21 HOH HOH . 
HA 7 HOH E 3 203 90 HOH HOH . 
HA 7 HOH E 4 204 14 HOH HOH . 
HA 7 HOH E 5 205 8 HOH HOH . 
HA 7 HOH E 6 206 70 HOH HOH . 
HA 7 HOH E 7 207 221 HOH HOH . 
HA 7 HOH E 8 208 95 HOH HOH . 
HA 7 HOH E 9 209 180 HOH HOH . 
HA 7 HOH E 10 210 66 HOH HOH . 
HA 7 HOH E 11 211 62 HOH HOH . 
HA 7 HOH E 12 212 113 HOH HOH . 
IA 7 HOH F 1 101 68 HOH HOH . 
IA 7 HOH F 2 102 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 5 4.413 17.988 -17.214 1 44.6 ? C1 GOL 405 A 1 
HETATM 2 O O1 GOL . . . K 5 4.552 18.537 -18.553 1 35.72 ? O1 GOL 405 A 1 
HETATM 3 C C2 GOL . . . K 5 4.935 18.851 -16.084 1 43.72 ? C2 GOL 405 A 1 
HETATM 4 O O2 GOL . . . K 5 6.331 18.721 -16.283 1 64.36 ? O2 GOL 405 A 1 
HETATM 5 C C3 GOL . . . K 5 4.521 18.459 -14.642 1 46.18 ? C3 GOL 405 A 1 
HETATM 6 O O3 GOL . . . K 5 5.286 17.424 -13.979 1 47.66 ? O3 GOL 405 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#