data_6H6J
#
_model_server_result.job_id            C5_GjDxwXtbPuQSBDEwNFQ 
_model_server_result.datetime_utc      '2024-11-01 08:34:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h6j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    6H6J 
#
_exptl.entry_id    6H6J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6H6J 
_cell.length_a            74.859 
_cell.length_b            74.859 
_cell.length_c            77.229 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H6J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D O4 SO4 . A SO4 203 1_555 K S SO4 . A SO4 210 3_664 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? 
metalc ? metalc1 A NE2 HIS 64 A HIS 63 1_555 B FE HEM . A HEM 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 95 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc3 A NE2 HIS 96 A HIS 95 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc4 B FE HEM . A HEM 201 1_555 C O CMO . A CMO 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.627 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 130 n n 
C1 C2 GOL sing 131 n n 
C1 H11 GOL sing 132 n n 
C1 H12 GOL sing 133 n n 
O1 HO1 GOL sing 134 n n 
C2 O2 GOL sing 135 n n 
C2 C3 GOL sing 136 n n 
C2 H2 GOL sing 137 n n 
O2 HO2 GOL sing 138 n n 
C3 O3 GOL sing 139 n n 
C3 H31 GOL sing 140 n n 
C3 H32 GOL sing 141 n n 
O3 HO3 GOL sing 142 n n 
#
_atom_sites.entry_id                     6H6J 
_atom_sites.fract_transf_matrix[1][1]    0.013358 
_atom_sites.fract_transf_matrix[1][2]    0.007713 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 200 HEM HEM . 
C 3 CMO A 1 202 201 CMO CMO . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 5 TRS A 1 204 2 TRS TRS . 
F 6 GOL A 1 205 3 GOL GOL . 
G 6 GOL A 1 206 4 GOL GOL . 
H 7 PEG A 1 207 5 PEG PEG . 
I 7 PEG A 1 208 6 PEG PEG . 
J 7 PEG A 1 209 7 PEG PEG . 
K 4 SO4 A 1 210 8 SO4 SO4 . 
L 8 HOH A 1 301 59 HOH HOH . 
L 8 HOH A 2 302 73 HOH HOH . 
L 8 HOH A 3 303 29 HOH HOH . 
L 8 HOH A 4 304 44 HOH HOH . 
L 8 HOH A 5 305 47 HOH HOH . 
L 8 HOH A 6 306 8 HOH HOH . 
L 8 HOH A 7 307 1 HOH HOH . 
L 8 HOH A 8 308 41 HOH HOH . 
L 8 HOH A 9 309 53 HOH HOH . 
L 8 HOH A 10 310 7 HOH HOH . 
L 8 HOH A 11 311 72 HOH HOH . 
L 8 HOH A 12 312 27 HOH HOH . 
L 8 HOH A 13 313 48 HOH HOH . 
L 8 HOH A 14 314 43 HOH HOH . 
L 8 HOH A 15 315 11 HOH HOH . 
L 8 HOH A 16 316 58 HOH HOH . 
L 8 HOH A 17 317 23 HOH HOH . 
L 8 HOH A 18 318 6 HOH HOH . 
L 8 HOH A 19 319 3 HOH HOH . 
L 8 HOH A 20 320 22 HOH HOH . 
L 8 HOH A 21 321 5 HOH HOH . 
L 8 HOH A 22 322 32 HOH HOH . 
L 8 HOH A 23 323 52 HOH HOH . 
L 8 HOH A 24 324 20 HOH HOH . 
L 8 HOH A 25 325 17 HOH HOH . 
L 8 HOH A 26 326 10 HOH HOH . 
L 8 HOH A 27 327 25 HOH HOH . 
L 8 HOH A 28 328 19 HOH HOH . 
L 8 HOH A 29 329 57 HOH HOH . 
L 8 HOH A 30 330 51 HOH HOH . 
L 8 HOH A 31 331 33 HOH HOH . 
L 8 HOH A 32 332 70 HOH HOH . 
L 8 HOH A 33 333 62 HOH HOH . 
L 8 HOH A 34 334 28 HOH HOH . 
L 8 HOH A 35 335 65 HOH HOH . 
L 8 HOH A 36 336 30 HOH HOH . 
L 8 HOH A 37 337 66 HOH HOH . 
L 8 HOH A 38 338 61 HOH HOH . 
L 8 HOH A 39 339 71 HOH HOH . 
L 8 HOH A 40 340 24 HOH HOH . 
L 8 HOH A 41 341 35 HOH HOH . 
L 8 HOH A 42 342 67 HOH HOH . 
L 8 HOH A 43 343 34 HOH HOH . 
L 8 HOH A 44 344 69 HOH HOH . 
L 8 HOH A 45 345 14 HOH HOH . 
L 8 HOH A 46 346 55 HOH HOH . 
L 8 HOH A 47 347 4 HOH HOH . 
L 8 HOH A 48 348 36 HOH HOH . 
L 8 HOH A 49 349 42 HOH HOH . 
L 8 HOH A 50 350 64 HOH HOH . 
L 8 HOH A 51 351 46 HOH HOH . 
L 8 HOH A 52 352 60 HOH HOH . 
L 8 HOH A 53 353 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 6 40.801 3.737 -14.985 1 68.47 ? C1 GOL 206 A 1 
HETATM 2 O O1 GOL . . . G 6 39.83 3.524 -13.95 1 72.87 ? O1 GOL 206 A 1 
HETATM 3 C C2 GOL . . . G 6 42.141 3.367 -14.421 1 66.17 ? C2 GOL 206 A 1 
HETATM 4 O O2 GOL . . . G 6 42.698 4.586 -13.927 1 71.73 ? O2 GOL 206 A 1 
HETATM 5 C C3 GOL . . . G 6 41.886 2.291 -13.361 1 59.88 ? C3 GOL 206 A 1 
HETATM 6 O O3 GOL . . . G 6 40.666 1.578 -13.669 1 53.9 ? O3 GOL 206 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#