data_6H6P # _model_server_result.job_id ULYPyZBcfxz7UOKPyonaFg _model_server_result.datetime_utc '2025-03-04 14:10:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":203}' # _entry.id 6H6P # _exptl.entry_id 6H6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H6P _cell.length_a 47.69 _cell.length_b 94.55 _cell.length_c 115.66 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 45 A GLY 45 1_555 G CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc2 A OE1 GLU 51 A GLU 51 1_555 I CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc3 A OG SER 58 A SER 58 1_555 H CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc4 A OE2 GLU 73 A GLU 73 1_555 H CA CA . A CA 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc5 A OD1 ASP 79 A ASP 79 1_555 G CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc6 A OG SER 87 A SER 87 1_555 J CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc7 A O ASP 124 A ASP 124 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc8 A OD1 ASP 124 A ASP 124 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc9 F CA CA . A CA 202 1_555 W O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? metalc ? metalc10 G CA CA . A CA 203 1_555 C O GLY 45 C GLY 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc11 G CA CA . A CA 203 1_555 Y O HOH . C HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc12 J CA CA . A CA 206 2_455 D OG SER 87 D SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc13 L CA CA . A CA 208 1_555 W O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc14 B OE1 GLU 23 B GLU 23 1_555 M CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc15 B OE2 GLU 23 B GLU 23 1_555 M CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc16 B O GLY 45 B GLY 45 1_555 N CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc17 B OG SER 58 B SER 58 1_555 R CA CA . B CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? metalc ? metalc18 B OG SER 87 B SER 87 1_555 T CA CA . C CA 202 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc19 B OE1 GLN 96 B GLN 96 1_555 Q CA CA . B CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc20 B O ASP 124 B ASP 124 1_555 P CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc21 B OD1 ASP 124 B ASP 124 1_555 P CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc22 M CA CA . B CA 201 1_555 D OE2 GLU 65 D GLU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc23 N CA CA . B CA 202 1_555 X O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc24 N CA CA . B CA 202 1_555 D O GLY 45 D GLY 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc25 Q CA CA . B CA 205 1_555 X O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc26 C OG SER 87 C SER 87 1_555 T CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc27 C O ASP 124 C ASP 124 1_555 U CA CA . D CA 201 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc28 C OD1 ASP 124 C ASP 124 1_555 U CA CA . D CA 201 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc29 C OD1 ASP 124 C ASP 124 1_555 V CA CA . D CA 202 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc30 C OD2 ASP 124 C ASP 124 1_555 V CA CA . D CA 202 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc31 Y O HOH . C HOH 304 1_655 V CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc32 D OE1 GLN 96 D GLN 96 1_555 U CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc33 D OD1 ASP 124 D ASP 124 1_555 U CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc34 D OD2 ASP 124 D ASP 124 1_555 U CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc35 D O ASP 124 D ASP 124 1_555 V CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc36 D OD1 ASP 124 D ASP 124 1_555 V CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc37 V CA CA . D CA 202 1_555 Z O HOH . D HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6H6P _atom_sites.fract_transf_matrix[1][1] 0.020969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1PE A 1 201 201 1PE 1PE . F 3 CA A 1 202 8 CA CA . G 3 CA A 1 203 15 CA CA . H 3 CA A 1 204 17 CA CA . I 3 CA A 1 205 18 CA CA . J 3 CA A 1 206 21 CA CA . K 3 CA A 1 207 25 CA CA . L 3 CA A 1 208 26 CA CA . M 3 CA B 1 201 2 CA CA . N 3 CA B 1 202 3 CA CA . O 3 CA B 1 203 4 CA CA . P 3 CA B 1 204 9 CA CA . Q 3 CA B 1 205 10 CA CA . R 3 CA B 1 206 19 CA CA . S 2 1PE C 1 201 201 1PE 1PE . T 3 CA C 1 202 22 CA CA . U 3 CA D 1 201 23 CA CA . V 3 CA D 1 202 24 CA CA . W 4 HOH A 1 301 108 HOH HOH . W 4 HOH A 2 302 107 HOH HOH . W 4 HOH A 3 303 90 HOH HOH . W 4 HOH A 4 304 99 HOH HOH . W 4 HOH A 5 305 95 HOH HOH . W 4 HOH A 6 306 14 HOH HOH . W 4 HOH A 7 307 8 HOH HOH . W 4 HOH A 8 308 89 HOH HOH . W 4 HOH A 9 309 115 HOH HOH . W 4 HOH A 10 310 96 HOH HOH . W 4 HOH A 11 311 75 HOH HOH . W 4 HOH A 12 312 78 HOH HOH . W 4 HOH A 13 313 78 HOH HOH . W 4 HOH A 14 314 5 HOH HOH . W 4 HOH A 15 315 76 HOH HOH . W 4 HOH A 16 316 59 HOH HOH . W 4 HOH A 17 317 92 HOH HOH . W 4 HOH A 18 318 7 HOH HOH . W 4 HOH A 19 319 58 HOH HOH . W 4 HOH A 20 320 56 HOH HOH . W 4 HOH A 21 321 114 HOH HOH . W 4 HOH A 22 322 83 HOH HOH . W 4 HOH A 23 323 109 HOH HOH . W 4 HOH A 24 324 62 HOH HOH . X 4 HOH B 1 301 16 HOH HOH . X 4 HOH B 2 302 106 HOH HOH . X 4 HOH B 3 303 12 HOH HOH . X 4 HOH B 4 304 22 HOH HOH . X 4 HOH B 5 305 24 HOH HOH . X 4 HOH B 6 306 18 HOH HOH . X 4 HOH B 7 307 39 HOH HOH . X 4 HOH B 8 308 88 HOH HOH . X 4 HOH B 9 309 63 HOH HOH . X 4 HOH B 10 310 43 HOH HOH . X 4 HOH B 11 311 77 HOH HOH . X 4 HOH B 12 312 19 HOH HOH . X 4 HOH B 13 313 2 HOH HOH . X 4 HOH B 14 314 16 HOH HOH . X 4 HOH B 15 315 21 HOH HOH . X 4 HOH B 16 316 14 HOH HOH . X 4 HOH B 17 317 23 HOH HOH . X 4 HOH B 18 318 15 HOH HOH . X 4 HOH B 19 319 66 HOH HOH . X 4 HOH B 20 320 65 HOH HOH . X 4 HOH B 21 321 22 HOH HOH . X 4 HOH B 22 322 6 HOH HOH . X 4 HOH B 23 323 110 HOH HOH . Y 4 HOH C 1 301 84 HOH HOH . Y 4 HOH C 2 302 36 HOH HOH . Y 4 HOH C 3 303 46 HOH HOH . Y 4 HOH C 4 304 103 HOH HOH . Y 4 HOH C 5 305 55 HOH HOH . Y 4 HOH C 6 306 100 HOH HOH . Y 4 HOH C 7 307 97 HOH HOH . Y 4 HOH C 8 308 79 HOH HOH . Y 4 HOH C 9 309 82 HOH HOH . Y 4 HOH C 10 310 3 HOH HOH . Y 4 HOH C 11 311 47 HOH HOH . Y 4 HOH C 12 312 21 HOH HOH . Y 4 HOH C 13 313 54 HOH HOH . Y 4 HOH C 14 314 112 HOH HOH . Y 4 HOH C 15 315 58 HOH HOH . Y 4 HOH C 16 316 80 HOH HOH . Y 4 HOH C 17 317 81 HOH HOH . Y 4 HOH C 18 318 38 HOH HOH . Y 4 HOH C 19 319 113 HOH HOH . Z 4 HOH D 1 301 102 HOH HOH . Z 4 HOH D 2 302 17 HOH HOH . Z 4 HOH D 3 303 9 HOH HOH . Z 4 HOH D 4 304 52 HOH HOH . Z 4 HOH D 5 305 55 HOH HOH . Z 4 HOH D 6 306 15 HOH HOH . Z 4 HOH D 7 307 111 HOH HOH . Z 4 HOH D 8 308 105 HOH HOH . Z 4 HOH D 9 309 101 HOH HOH . Z 4 HOH D 10 310 57 HOH HOH . Z 4 HOH D 11 311 13 HOH HOH . Z 4 HOH D 12 312 13 HOH HOH . Z 4 HOH D 13 313 80 HOH HOH . Z 4 HOH D 14 314 61 HOH HOH . Z 4 HOH D 15 315 4 HOH HOH . Z 4 HOH D 16 316 86 HOH HOH . Z 4 HOH D 17 317 1 HOH HOH . Z 4 HOH D 18 318 70 HOH HOH . Z 4 HOH D 19 319 64 HOH HOH . Z 4 HOH D 20 320 104 HOH HOH . Z 4 HOH D 21 321 10 HOH HOH . Z 4 HOH D 22 322 74 HOH HOH . Z 4 HOH D 23 323 53 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.528 _atom_site.Cartn_y -12.805 _atom_site.Cartn_z -11.663 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 122.99 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #