data_6H73
#
_model_server_result.job_id            b0QfzhWABumO8m3zZZwgKA 
_model_server_result.datetime_utc      '2024-11-23 22:05:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h73 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    6H73 
#
_exptl.entry_id    6H73 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6H73 
_cell.length_a            115.19 
_cell.length_b            115.19 
_cell.length_c            233.06 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H73 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 115.19 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 57.595 99.757466 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE1 GLU 189 A GLU 190 1_555 H MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc2 B O PRO 226 A PRO 227 1_555 H MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc3 G O1B ATP . A ATP 302 1_555 H MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc4 G O2A ATP . A ATP 302 1_555 H MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc5 H MG MG . A MG 303 1_555 N O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc6 H MG MG . A MG 303 1_555 N O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6H73 
_atom_sites.fract_transf_matrix[1][1]    0.008681 
_atom_sites.fract_transf_matrix[1][2]    0.005012 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010024 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP B 1 301 301 ATP ATP . 
D 4 PO4 B 1 302 1 PO4 PO4 . 
E 4 PO4 B 1 303 4 PO4 PO4 . 
F 5 FUQ A 1 301 303 FUQ 5M0 . 
G 3 ATP A 1 302 301 ATP ATP . 
H 6 MG A 1 303 302 MG MgO . 
I 7 GUH A 1 304 303 GUH 6M1 . 
J 8 MOO A 1 305 305 MOO M10 . 
K 4 PO4 A 1 306 2 PO4 PO4 . 
L 4 PO4 A 1 307 3 PO4 PO4 . 
M 9 HOH B 1 401 29 HOH HOH . 
M 9 HOH B 2 402 76 HOH HOH . 
M 9 HOH B 3 403 62 HOH HOH . 
M 9 HOH B 4 404 11 HOH HOH . 
M 9 HOH B 5 405 65 HOH HOH . 
M 9 HOH B 6 406 44 HOH HOH . 
M 9 HOH B 7 407 36 HOH HOH . 
M 9 HOH B 8 408 9 HOH HOH . 
M 9 HOH B 9 409 32 HOH HOH . 
M 9 HOH B 10 410 26 HOH HOH . 
M 9 HOH B 11 411 85 HOH HOH . 
M 9 HOH B 12 412 14 HOH HOH . 
M 9 HOH B 13 413 10 HOH HOH . 
M 9 HOH B 14 414 68 HOH HOH . 
M 9 HOH B 15 415 43 HOH HOH . 
M 9 HOH B 16 416 25 HOH HOH . 
M 9 HOH B 17 417 30 HOH HOH . 
M 9 HOH B 18 418 53 HOH HOH . 
M 9 HOH B 19 419 34 HOH HOH . 
M 9 HOH B 20 420 86 HOH HOH . 
M 9 HOH B 21 421 72 HOH HOH . 
M 9 HOH B 22 422 6 HOH HOH . 
M 9 HOH B 23 423 70 HOH HOH . 
M 9 HOH B 24 424 33 HOH HOH . 
M 9 HOH B 25 425 66 HOH HOH . 
M 9 HOH B 26 426 90 HOH HOH . 
M 9 HOH B 27 427 71 HOH HOH . 
M 9 HOH B 28 428 64 HOH HOH . 
M 9 HOH B 29 429 12 HOH HOH . 
M 9 HOH B 30 430 83 HOH HOH . 
M 9 HOH B 31 431 88 HOH HOH . 
M 9 HOH B 32 432 84 HOH HOH . 
M 9 HOH B 33 433 69 HOH HOH . 
M 9 HOH B 34 434 81 HOH HOH . 
M 9 HOH B 35 435 27 HOH HOH . 
M 9 HOH B 36 436 18 HOH HOH . 
M 9 HOH B 37 437 42 HOH HOH . 
M 9 HOH B 38 438 79 HOH HOH . 
M 9 HOH B 39 439 41 HOH HOH . 
M 9 HOH B 40 440 46 HOH HOH . 
M 9 HOH B 41 441 78 HOH HOH . 
N 9 HOH A 1 401 56 HOH HOH . 
N 9 HOH A 2 402 63 HOH HOH . 
N 9 HOH A 3 403 23 HOH HOH . 
N 9 HOH A 4 404 58 HOH HOH . 
N 9 HOH A 5 405 24 HOH HOH . 
N 9 HOH A 6 406 8 HOH HOH . 
N 9 HOH A 7 407 50 HOH HOH . 
N 9 HOH A 8 408 13 HOH HOH . 
N 9 HOH A 9 409 61 HOH HOH . 
N 9 HOH A 10 410 67 HOH HOH . 
N 9 HOH A 11 411 17 HOH HOH . 
N 9 HOH A 12 412 22 HOH HOH . 
N 9 HOH A 13 413 302 HOH MgO . 
N 9 HOH A 14 414 49 HOH HOH . 
N 9 HOH A 15 415 38 HOH HOH . 
N 9 HOH A 16 416 52 HOH HOH . 
N 9 HOH A 17 417 302 HOH MgO . 
N 9 HOH A 18 418 35 HOH HOH . 
N 9 HOH A 19 419 75 HOH HOH . 
N 9 HOH A 20 420 5 HOH HOH . 
N 9 HOH A 21 421 3 HOH HOH . 
N 9 HOH A 22 422 51 HOH HOH . 
N 9 HOH A 23 423 59 HOH HOH . 
N 9 HOH A 24 424 15 HOH HOH . 
N 9 HOH A 25 425 45 HOH HOH . 
N 9 HOH A 26 426 48 HOH HOH . 
N 9 HOH A 27 427 16 HOH HOH . 
N 9 HOH A 28 428 21 HOH HOH . 
N 9 HOH A 29 429 47 HOH HOH . 
N 9 HOH A 30 430 89 HOH HOH . 
N 9 HOH A 31 431 77 HOH HOH . 
N 9 HOH A 32 432 20 HOH HOH . 
N 9 HOH A 33 433 60 HOH HOH . 
N 9 HOH A 34 434 80 HOH HOH . 
N 9 HOH A 35 435 4 HOH HOH . 
N 9 HOH A 36 436 57 HOH HOH . 
N 9 HOH A 37 437 19 HOH HOH . 
N 9 HOH A 38 438 54 HOH HOH . 
N 9 HOH A 39 439 74 HOH HOH . 
N 9 HOH A 40 440 55 HOH HOH . 
N 9 HOH A 41 441 31 HOH HOH . 
N 9 HOH A 42 442 39 HOH HOH . 
N 9 HOH A 43 443 7 HOH HOH . 
N 9 HOH A 44 444 28 HOH HOH . 
N 9 HOH A 45 445 73 HOH HOH . 
N 9 HOH A 46 446 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 54.219 6.601 21.046 0.5 47.76 ? PG ATP 301 B 1 
HETATM 2 O O1G ATP . . . C 3 54.664 7.548 19.961 0.5 43.97 ? O1G ATP 301 B 1 
HETATM 3 O O2G ATP . . . C 3 55.309 5.701 21.576 0.5 52.5 ? O2G ATP 301 B 1 
HETATM 4 O O3G ATP . . . C 3 53.363 7.238 22.115 0.5 45.71 ? O3G ATP 301 B 1 
HETATM 5 P PB ATP . . . C 3 53.661 4.979 18.851 0.5 55.55 ? PB ATP 301 B 1 
HETATM 6 O O1B ATP . . . C 3 53.163 5.908 17.771 0.5 63.38 ? O1B ATP 301 B 1 
HETATM 7 O O2B ATP . . . C 3 55.124 4.612 18.906 0.5 56.86 ? O2B ATP 301 B 1 
HETATM 8 O O3B ATP . . . C 3 53.227 5.595 20.274 0.5 53.83 ? O3B ATP 301 B 1 
HETATM 9 P PA ATP . . . C 3 53.418 2.285 19.424 0.5 75.22 ? PA ATP 301 B 1 
HETATM 10 O O1A ATP . . . C 3 54.298 1.613 18.398 0.5 76.76 ? O1A ATP 301 B 1 
HETATM 11 O O2A ATP . . . C 3 53.998 2.683 20.76 0.5 80.04 ? O2A ATP 301 B 1 
HETATM 12 O O3A ATP . . . C 3 52.807 3.619 18.764 0.5 64.34 ? O3A ATP 301 B 1 
HETATM 13 O O5' ATP . . . C 3 52.138 1.344 19.674 0.5 78.98 ? O5' ATP 301 B 1 
HETATM 14 C C5' ATP . . . C 3 51.535 0.645 18.588 0.5 79.74 ? C5' ATP 301 B 1 
HETATM 15 C C4' ATP . . . C 3 51.792 -0.838 18.826 0.5 79.86 ? C4' ATP 301 B 1 
HETATM 16 O O4' ATP . . . C 3 50.595 -1.558 19.134 0.5 77.17 ? O4' ATP 301 B 1 
HETATM 17 C C3' ATP . . . C 3 52.398 -1.521 17.61 0.5 80.71 ? C3' ATP 301 B 1 
HETATM 18 O O3' ATP . . . C 3 53.817 -1.625 17.751 0.5 80.28 ? O3' ATP 301 B 1 
HETATM 19 C C2' ATP . . . C 3 51.769 -2.899 17.584 0.5 79.94 ? C2' ATP 301 B 1 
HETATM 20 O O2' ATP . . . C 3 52.769 -3.9 17.786 0.5 82.32 ? O2' ATP 301 B 1 
HETATM 21 C C1' ATP . . . C 3 50.779 -2.922 18.741 0.5 74.58 ? C1' ATP 301 B 1 
HETATM 22 N N9 ATP . . . C 3 49.477 -3.57 18.407 0.5 68.73 ? N9 ATP 301 B 1 
HETATM 23 C C8 ATP . . . C 3 48.64 -4.054 19.344 0.5 66.54 ? C8 ATP 301 B 1 
HETATM 24 N N7 ATP . . . C 3 47.535 -4.607 18.79 0.5 65.74 ? N7 ATP 301 B 1 
HETATM 25 C C5 ATP . . . C 3 47.65 -4.488 17.457 0.5 64.33 ? C5 ATP 301 B 1 
HETATM 26 C C6 ATP . . . C 3 46.822 -4.867 16.287 0.5 59.16 ? C6 ATP 301 B 1 
HETATM 27 N N6 ATP . . . C 3 45.631 -5.493 16.446 0.5 55.93 ? N6 ATP 301 B 1 
HETATM 28 N N1 ATP . . . C 3 47.292 -4.57 15.056 0.5 58.52 ? N1 ATP 301 B 1 
HETATM 29 C C2 ATP . . . C 3 48.473 -3.949 14.889 0.5 61.01 ? C2 ATP 301 B 1 
HETATM 30 N N3 ATP . . . C 3 49.271 -3.577 15.905 0.5 63.76 ? N3 ATP 301 B 1 
HETATM 31 C C4 ATP . . . C 3 48.935 -3.814 17.2 0.5 66.31 ? C4 ATP 301 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#